Wheeler A A - OmicsDI

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Unknown (3385)
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Mass Spectrometry (36)
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Instrument Platform

Illumina HiSeq 2500 (10)
Illumina HiSeq 2000 (9)
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Publication Date

2014 (83)
2011 (71)
2015 (70)
2016 (64)
2012 (62)
2013 (54)
2010 (44)
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2008 (28)
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2020 (23)
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2004 (1)

CHEBI ID

CHEBI:16196 (2)
CHEBI:18186 (2)
CHEBI:30805 (2)
CHEBI:113542 (1)
CHEBI:131427 (1)
CHEBI:131924 (1)
CHEBI:131977 (1)
CHEBI:132032 (1)
CHEBI:132033 (1)
CHEBI:132037 (1)
CHEBI:134113 (1)
CHEBI:134548 (1)
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CHEBI:142699 (1)
CHEBI:142701 (1)
CHEBI:144339 (1)
CHEBI:145970 (1)
CHEBI:15366 (1)
CHEBI:15384 (1)
CHEBI:15428 (1)
CHEBI:15676 (1)

Metabolite Name

1_CUDA iSTD (1)
1_Ceramide d18:1/17:0; iSTD (1)
1_FA 16:0-d3; iSTD (1)
1_LPC 17:0; iSTD (1)
1_MAG 17:0/0:0/0:0; iSTD (1)
2-methoxy-3-(1-methylpropyl) pyrazine (1)
3,7-dimethyluric acid (1)
4-methylheptadecane (1)
Alpha hydroxylauric acid (1)
Aminoadipic acid (1)
Ascorbic acid (1)
Capsaicin (1)
Capsiamide (1)
Ceramide d32:1; (1)
Ceramide d34:0; (1)
Ceramide d34:1; (1)
Ceramide d36:1; (1)
Ceramide d38:1; (1)
Ceramide d40:0; (1)
Ceramide d40:1; (1)
Ceramide d42:0; (1)
Ceramide d42:1; (1)
Ceramide d42:2; A (1)
Ceramide d42:2; B (1)
Ceramide d43:1; (1)
Ceramide d44:1; (1)
Dehydroascorbic acid (1)
Dinorcapsaicin (1)
FA 10:0; (capric acid) (1)
FA 11:0; (undecylic acid) (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

First Public Date

2020 (23)
2022 (14)
2021 (14)
2016 (13)
2023 (12)
2019 (12)
2018 (12)
2026 (10)
2017 (9)
2015 (8)
2025 (7)
2024 (7)
2013 (3)
2014 (2)

Classification

bacteria (6)
viruses (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (297)
RNA-seq of coding RNA (97)
ChIP-seq (77)
RNA-seq of non coding RNA (13)
DNA-seq (10)
Unknown experiment type (9)
Transcription profiling by RT-PCR (7)
Methylation profiling by high throughput sequencing (5)
Comparative genomic hybridization by array (4)
RNA-seq of coding RNA from single cells (4)
Animal - High-throughput sequencing (2)
Hi-C (2)
Other (2)
MicroRNA profiling by array (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
Animal - One-color microarray (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2023 (332)
2022 (320)
2021 (299)
2025 (292)
2024 (284)
2020 (261)
2014 (241)
2016 (227)
2018 (223)
2019 (218)
2015 (213)
2017 (180)
2012 (156)
2011 (148)
2013 (143)
2010 (109)
2009 (84)
2008 (62)
2026 (43)
2007 (25)
2006 (22)
2005 (13)
2002 (9)
2004 (6)
1999 (6)
2003 (4)
2001 (3)
2000 (2)
1998 (2)
1997 (1)

Lab affiliation

Medical Research Council Senior Research Fellow Associate Professor in RNA Biochemistry and Research Group Leader Centre for Synthetic and Systems Biology (SynthSys) University of Edinburgh Max Born Crescent CH Waddington Building, room 3.06 EH9 3BF Edinburgh UK (4)
Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada Institute of Biomedical Engineering, University of Toronto, 164 College Street, Toronto, ON, M5S 3G9, Canada. (2)
University of Edinburgh (2)
BioMolecular Lab, Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Saudi Arabia (1)
Dairy Foods, AgResearch, Ruakura Research Centre (1)
Department of Biology, University of Konstanz, Universitaetsstrasse 10, 78457 Konstanz, Germany (1)
Department of Chemistry, Donnelly Centre for Cellular and Biomolecular Research,Institute of Biomaterials and Biomedical Engineering, University of Toronto (1)
Department of Molecular Genetics, Erasmus University Medical Center, Erasmus MC Cancer Institute; Dr. Molewaterplein 40, 3015GD Rotterdam, The Netherlands (1)
Department of Physiology, University of Toronto, Toronto, Ontario, Canada (1)
Dept. of Physiology, University of Toronto, Toronto, ON, Canada Dept. of Medicine, University of Toronto, Toronto, ON, Canada (1)
European Molecular Biology Laboratory (1)
Gene Regulation & Expression, School of Life Sciences, University of Dundee, UK. (1)
Humboldt University of Berlin (1)
Institute for Biochemistry and Molecular Biology, Medical Faculty, University of Bonn, 53115 Bonn, Germany (1)
Laboratory of Cell Biology, Center for Cancer Research, National Cancer Institute, NIH (1)
Marine Biological Association (1)
Medical Bioanalytics Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen (1)
Muséum national d'Histoire naturelle (1)
NSW Department of Primary Industries, Extensive Livestock Industry Centre, Trevenna Rd, University of New England, Armidale, NSW, 2351, Australia. (1)
NSW Department of Primary Industries, JSF Barker Building, Trevenna road, University of New England, Armidale, NSW 2351 (1)
NSW Department of Primary Industries, JSF Barker Building, Trevenna road, University of New England, Armidale, NSW 2351. jude.bond@dpi.nsw.gov.au (1)
National Institute for Biological Standards and Control (1)
Proteomics center, Erasmus MC (1)
Royal Society University Research Fellow, Group Leader and Research Lecturer at Sir William Dunn School of Pathology (University of Oxford); Fellow by special election at St. Edmund Hall (University of Oxford) (1)
School of Life Sciences, Tsinghua University, China (1)
Stanford University (1)
The Roslin Institute, University of Edinburgh (1)
University Medical Center Goettingen, Department of Clinical Chemistry, Core Facility Proteomics (1)
University of the Balearic Islands (1)
Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald (1)

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RANCM: a new ranking scheme for assigning confidence levels to metabolite assignments in NMR-based metabolomics studies

INTRODUCTION: The Metabolomics Standards Initiative has recommended four categories for metabolite assignments in NMR-based metabolic profiling studies. The putatively annotated compound category is most commonly reported by metabolomics investigators. However, there is significa...

2019-09-27 | MTBLS781 | MetaboLights

Impact of oxidative stress on ascorbate biosynthesis in Chlamydomonas via regulation of the VTC2 gene encoding a GDP-l-galactose phosphorylase

The l-galactose (Smirnoff-Wheeler) pathway represents the major route to l-ascorbic acid (vitamin C) biosynthesis in plants. Arabidopsis thaliana VTC2 and its paralogue VTC5 function as GDP-l-galactose phosphorylases converting GDP-l-galactose to l-galactose-1-P, thus catalyzing the first committed ...

ORGANISM(S): Chlamydomonas reinhardtii

2012-05-02 | E-GEOD-34826 | biostudies-arrayexpress

Identification of pre-diagnostic lipid sets associated with liver cancer risk using untargeted lipidomics and chemical set analysis – a nested case-control study within the ATBC cohort

In pre-disposed individuals, a reprogramming of the hepatic lipid metabolism may support liver cancer initiation. We conducted a high-resolution mass spectrometry based untargeted lipidomics analysis of pre-diagnostic serum samples from a nested case-control study (219 liver cancer cases and 219 ...

2023-09-18 | MTBLS7776 | MetaboLights

WGT: Tools and algorithms for recognizing, visualizing, and generating Wheeler graphs.

Not available

S-EPMC10415921 | biostudies-literature

Authentication and characterisation of a new oesophageal adenocarcinoma cell line: MFD-1

Whole genome sequencing (WGS) from snap-frozen oesophageal tumour tissue and germline nucleic acids isolated from peripheral blood mononuclear cells (PBMC) was performed as part of the International Cancer Genome Consortium project and OCCAMS consortium (1,2). Filtered read sequences were mapped to ...

ORGANISM(S): Homo sapiens

2016-09-09 | E-MTAB-4600 | biostudies-arrayexpress

Fast and accurate short read alignment with Burrows-Wheeler transform.

Not available

S-EPMC2705234 | biostudies-literature

Do two-wheeler riders propel towards autonomous driving? A path-based probabilistic study in Indian context.

Not available

S-EPMC11336834 | biostudies-literature

Critical evaluation of the role of the Toll-like receptor 18-Wheeler in the host defense of Drosophila.

Not available

S-EPMC1084184 | biostudies-literature

Fast and accurate long-read alignment with Burrows-Wheeler transform.