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TranscriptomicsTranscriptome Phase Distribution Analysis Reveals Diurnal Regulated Biological Processes and Key Pathways in Rice Flag Leaves and Seedling Leaves
Plant diurnal oscillation is a 24-hour period based variation. The correlation between diurnal genes and biological pathways was widely revealed by microarray analysis in different species. Rice (Oryza sativa) is the major food staple for about half of the world's population. The rice flag leaf is e...
ORGANISM(S): Oryza sativa 
2011-03-24 | E-GEOD-28124 | biostudies-arrayexpress
TranscriptomicsDifferential transcript accumulation in seedling and mature shoots identifies components contributing to corn earworm resistance
As maize seedlings germinate into the soil, they encounter an environment teeming with insects seeking rich sources of nutrition. Maize presumably has developed a number of molecular mechanisms to ensure survival at the beginning of its life cycle. Bioassays indicated maize seedlings were more to...
ORGANISM(S): Zea mays 
2011-11-03 | E-GEOD-27709 | biostudies-arrayexpress
ProteomicsPlant SILAC: Stable-Isotope Labelling with Amino Acids of Arabidopsis Seedlings for Quantitative Proteomics.
Stable Isotope Labelling by Amino acids in Cell culture (SILAC) is a powerful technique for comparative quantitative proteomics, which has recently been applied to a number of different eukaryotic organisms. Inefficient incorporation of labelled amino acids in cell cultures of Arabidopsis thaliana h...
ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702) 
2016-08-15 | MSV000080043 | MassIVE
Transcriptomicsarabidopsis accession columbia 78h old whole seedling expression
four biological replicates of arabidopsis accession columbia 78h old whole seedling expression data Keywords: exon/intergenic comparison
ORGANISM(S): Arabidopsis thaliana 
2006-12-19 | GSE6562 | GEO
TranscriptomicsBarley Germination and Seedling Growth Time Course
Analysis of barley grains/seedlings representing six well characterized and distinct germination stages over the course of seed germination and seedling growth. Three biological replications, six developmental stages.
ORGANISM(S): Hordeum vulgare 
2011-04-01 | E-GEOD-23595 | biostudies-arrayexpress
GenomicsDNase I hypersensitive sites in two tissues of rice
Gene expression is controlled by the complex interaction of transcription factors binding to promoters and other regulatory DNA elements. One common characteristic of the genomic regions associated with regulatory proteins is a pronounced sensitivity to DNase I digestion. We generated genome-wide ...
ORGANISM(S): Oryza sativa 
2011-11-09 | E-GEOD-26610 | biostudies-arrayexpress
GenomicsGenome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq.
In order to dissect the gene regulatory network during the functional transition of cotyledons from non-photosynthetic storage tissue to metabolically active photosynthetic tissue, we constructed ChIP-Seq libraries for NAC and YABBY transcription factors using pooled cotyledons from seedling develop...
ORGANISM(S): Glycine max 
2013-08-14 | E-GEOD-42422 | biostudies-arrayexpress
TranscriptomicsInvolvement of microRNA-related regulatory pathways in glucose-mediated control of Arabidopsis early seedling development
In plants, sugars such as glucose act as signaling molecules that promote changes in gene expression programs impacting on growth and development. Recent evidences have revealed the potential participation of mRNA decay control in some aspects of glucose-mediated regulatory responses suggesting a r...
ORGANISM(S): Arabidopsis thaliana 
2013-09-06 | E-GEOD-43546 | biostudies-arrayexpress
TranscriptomicsAtbZIP16 integrates light and hormone signaling pathways to regulate Arabidopsis early seedling development
In response to environmental light signals, transcriptomic adjustment plays an important role in Arabidopsis seed germination and seedling development. G-box cis-element is commonly present in promoters of genes positively or negatively responding to the light signal. For the pursuit of additional t...
ORGANISM(S): Arabidopsis thaliana 
2013-07-22 | E-GEOD-30910 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of barley seedling leaves from serveral different strains challenged with Puccinia hordei
Transcript-Level Variation in Barley Seedling Leaves Challenged with Puccinia hordei and the Molecular Basis of Partial Resistance to Leaf Rust
ORGANISM(S): Hordeum vulgare 
2009-10-01 | E-TABM-645 | biostudies-arrayexpress
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