William William W

Show results for

Unknown (1081)
Transcriptomics (696)
Genomics (162)
Proteomics (121)
Metabolomics (20)
Genomic (5)
Models (4)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (460)
Mus musculus (229)
Rattus norvegicus (38)
Saccharomyces cerevisiae (18)
Arabidopsis thaliana (15)
Caenorhabditis elegans (12)
Drosophila melanogaster (7)
Escherichia coli (7)
Glycine max (6)
Staphylococcus aureus (6)
Drosophila mojavensis (5)
Pseudomonas aeruginosa (5)
Mus musculus x Mus spretus (4)
Aspergillus fumigatus (4)
Zea mays (4)
Salmo salar (4)
Mycobacterium tuberculosis H37Rv (4)
Emiliania huxleyi (3)
Anopheles gambiae (3)
Sus scrofa (3)
Bradyrhizobium diazoefficiens USDA 110 (2)
Theileria annulata (2)
Caenorhabditis remanei (2)
uncultured bacterium (2)
Neisseria gonorrhoeae (2)
Synechocystis sp. PCC 6803 (2)
Dickeya dadantii 3937 (2)
Toxoplasma gondii (2)
Entamoeba histolytica (2)
Lepidium sativum (2)

Organisms

Rhodococcus jostii RHA1 (2)
Homo sapiens (2)
gut metagenome (1)

Repository

biostudies-arrayexpress (739)
EGA (117)
pride (51)
MassIVE (44)
MetaboLights (14)
PanoramaPublic (10)
ENA (7)
GNPS (6)
iProX (6)
dbGaP (5)
BioModels (4)
jPOST (4)
geo (2)
PeptideAtlas (2)
GPMDB (1)

Tissue

Cell culture (10)
Kidney cell (6)
Liver (3)
Permanent cell line cell (3)
T cell (3)
Blood plasma (2)
Heart (2)
Macrophage (2)
Amniotic fluid (1)
Anal sac (1)
Apocrine gland (1)
Blood (1)
Blood serum (1)
Blood vessel (1)
Bone (1)
Bone marrow (1)
Cell suspension culture (1)
Epimastigote (1)
Intestine (1)
JURKAT cell (1)
Leaf (1)
Melanocyte (1)
Melanoma cell (1)
Mesenchymal cell (1)
Myotube (1)
Plant cell (1)
Respiratory epithelial cell (1)
Rosette (1)
Spleen (1)
Whole body (1)

Disease

Normal (5)
Schistosomiasis (3)
Osteosarcoma (2)
Mild cystic fibrosis, pulmonary disease (1)
Psoriasis vulgaris (1)
Androgen-dependent prostate cancer (1)
B-cell chronic lymphocytic leukemia (1)
Schizophrenia (1)
Acute lymphoblastic leukemia (1)
Squamous cell carcinoma (1)
Small cell lung carcinoma (1)
Megakaryoblastic leukemia (1)
Plasmodium berghei CTRP knockout strain (Dessens et al., 1999) infection (1)
Multiple myeloma (1)
Not Available (1)
Amyotrophic lateral sclerosis (1)
Anal gland adenocarcinoma (1)
Cerebrovascular disease (1)
Disease free (1)
Laboratory infectious disease (1)
Melanoma (1)
Trypanosomiasis (1)

Technology Type

Mass Spectrometry (51)
Shotgun proteomics (20)
Bottom-up proteomics (14)
Mass spectrometry (12)
Illumina HiSeq 2000 (5)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (4)
SWATH MS (4)
Gel-based experiment (3)
Affymetrix 6.0 (2)
Illumina HiSeq 2500, ILLUMINA (2)
Data-independent acquisition (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500, ILLUMINA, Affymetrix GeneChip Scanner 3000 7g (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
Illumina MiSeq (1)
Illumina Omni 2.5, Illiumina Omni 2.5 (1)
Mass spectrometry assay (1)
NMR spectroscopy assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2500 (7)
Illumina HiSeq 2000 (7)
Illumina NovaSeq 6000 (5)
Illumina HiSeq 4000 (5)
NextSeq 500 (5)
AB SOLiD 4 System (3)
ScanArray [PerkinElmer] (3)
GenePix 4000B [Axon Instruments] (3)
Scanning hardware (3)
Illumina BeadArray reader (2)
Usegalaxy.org (2)
418 [Affymetrix] (2)
Axon GenePix 4000B scanning hardware (2)
NextSeq 2000 (2)
Illumina MiSeq (2)
KAPA RNA HyperPrep Kit (1)
NEXTflex Small-RNA Seq kit v3 (Perkin Elmer) & NEXTflex Rapid XP DNA-seq kit v2 (Perkin Elmer) (1)
Direct-zol RNA microprep kit (Zymo Research), LabChip RNA pico sensitivity assay, Perkin Elmer & Nucleospin RNA kit (Macherey Nagel) (1)
PALM type 4 microscope (Zeiss) (1)
Mac (1)
Cell culture reagents and serum (1)
KAPA mRNA HyperPrep kit (1)
Qiagen RNeasy kit (1)
Cell culture reagents and Qiagen RNEasy kit (1)
Illimina TruSeq stranded mRNA kit (1)
Punch biopsy (1)
Computer (1)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)
Bioanalyzer (1)

Publication Date

2015 (108)
2010 (95)
2013 (92)
2014 (79)
2008 (72)
2011 (70)
2012 (62)
2016 (50)
2009 (34)
2007 (27)
2021 (24)
2024 (20)
2020 (20)
2022 (19)
2023 (18)
2019 (17)
2017 (16)
2025 (15)
2026 (10)
2006 (8)
2005 (7)
2018 (5)
2004 (4)

UNIPROT ID/AC

A4QPA9 (1)
O00459 (1)
O15530 (1)
P00533 (1)
P01133 (1)
P04049 (1)
P04626 (1)
P20936 (1)
P21860 (1)
P27986 (1)
P28482 (1)
P28562 (1)
P31749 (1)
P42336 (1)
P42338 (1)
P62993 (1)
P98077 (1)
Q02297 (1)
Q02750 (1)
Q06124 (1)
Q07889 (1)
Q13115 (1)
Q15303 (1)
Q16828 (1)
A0A5E1 (1)
A0ELI5 (1)
A0EQY3 (1)
A0JLQ7 (1)
A0JNY3 (1)
A0JNY7 (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:11814 (1)
CHEBI:15033 (1)
CHEBI:15422 (1)
CHEBI:16618 (1)
CHEBI:18064 (1)
CHEBI:19545 (1)
CHEBI:19692 (1)
CHEBI:1989 (1)
CHEBI:19975 (1)
CHEBI:20124 (1)
CHEBI:20417 (1)
CHEBI:20484 (1)
CHEBI:20544 (1)
CHEBI:20680 (1)
CHEBI:2097 (1)
CHEBI:22413 (1)
CHEBI:2332 (1)
CHEBI:23875 (1)
CHEBI:2458 (1)
CHEBI:24804 (1)
CHEBI:25974 (1)
CHEBI:26007 (1)
CHEBI:27327 (1)
CHEBI:27370 (1)
CHEBI:27421 (1)
CHEBI:27608 (1)
CHEBI:2782 (1)
CHEBI:27959 (1)
CHEBI:27978 (1)
CHEBI:2806 (1)

Metabolite Name

Adenosine (4)
Arginine (4)
Aspartic acid (4)
Glycerol (4)
Phenylalanine (4)
Tryptophan (4)
1-linoleoyl-GPC (18:2) (3)
1-methylhistidine (3)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (3)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (3)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (3)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (3)
1-palmitoyl-GPC (16:0) (3)
1-palmitoyl-GPE (16:0) (3)
1-stearoyl-2-oleoyl-GPC (18:0/18:1) (3)
1-stearoyl-2-oleoyl-GPE (18:0/18:1) (3)
12,13-DiHOME (3)
2-aminoadipate (3)
2-aminoheptanoate (3)
2-hydroxydecanoate (3)
2-hydroxyglutarate (3)
3-aminoisobutyrate (3)
3-hydroxy-3-methylglutarate (3)
3-hydroxydecanoate (3)
3-hydroxyisobutyrate (3)
3-hydroxylaurate (3)
3-hydroxymyristate (3)
3-hydroxyoctanoate (3)
3-methylhistidine (3)
3-phosphoglycerate (3)

First Public Date

2014 (4)
2022 (1)
2019 (1)
2017 (1)

Modelling Approach

Constraint-based model (2)
Ordinary differential equation model (2)

Lab affiliation

Bioplatforms Australia (4)
Principal Investigator Centre for Targeted Protein Degradation, School of Life Sciences (4)
Laboratoire Maladies Rares: Génétique et Métabolisme- INSERM U1211, 33000 Bordeaux, France (3)
Departamento de Ciências Biológicas, Laboratório de Enzimologia e Proteômica, Universidade Federal de Ouro Preto, Brazil (2)
Principal Investigator Centre for Targeted Protein Degradation (2)
Principal Investigator • Centre for Targeted Protein Degradation (2)
1Department of Physiology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA (1)
Assistant Professor, Surgery (1)
Associate Professor, Department of Biochemistry & Molecular Biology, UTMB Mass Spectrometry Director, University of Texas Medical Branch – Galveston, Texas, USA (1)
Departament of Biological Sciences, Laboratory of Enzimology and Proteomics, UFederal University of Ouro Preto, Brazil (1)
Departamento de Ciências Biológicas, Laboratório de Enzimologia e Proteômica, Instituto de Ciencias Ciências Exatas e Biológicas, Universidade Federal de Ouro Preto, Brasil (1)
Departamento de Ciências Biológicas, Laboratório de Enzimologia e Proteômica, Instituto de Ciências Exatas e Biológicas, Universidade Federal de Ouro Preto, Brasil (1)
Department of Biological Sciences, Federal University of Ouro Preto, Minas Gerais, Brazil (1)
Department of Biological Sciences, Federal University of Ouro Preto, Minas Gerais, Brazil. (1)
Department of Biological Sciences, Kent State University, USA (1)
Department of Biological Sciences, Universidade Federal de Ouro Preto, Brazil (1)
Department of Biology, Concordia University, Montreal, Quebec, Canada (1)
Department of Cardiology Boston Children's Hospital (1)
Department of Chemistry, Imperial College London, United Kingdom (1)
Department of Genome Sciences, University of Washington, Seattle, WA, USA (1)
Department of Marine, Earth and Atmospheric Sciences, North Carolina State University, Raleigh, NC 27695 (1)
Department of Microbiology and Immunology University of Oklahoma Health Campus Oklahoma City, Oklahoma, USA (1)
Department of Pharmacology & Therapeutics, McGill University, 3655 Prom. Sir-William-Osler, Montreal, Quebec, H3G 1Y6, Canada. McGill Centre for Microbiome Research, Montreal, Quebec, Canada (1)
Dept of Biology, Concordia University, Montreal, Quebec, Canada (1)
Head of The Steen-Laboratory, Director of Proteomics, Boston Children's Hospital, Harvard Medical School (1)
Lab Head, Department of Biochemistry and Pharmacology, The University of Melbourne (1)
Oxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, Oxford, UK (1)
Oxford University Sir William Dunn School of Pathology, Oxford, OX1 3RE, UK (1)
Oxford University, Sir William Dunn School of Pathology, Oxford (1)
Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York, United States (1)

IsPrivate

False (4)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)
TransQST (1)

Study type

Transcription profiling by array (477)
RNA-seq of coding RNA (87)
ChIP-seq (30)
Comparative genomic hybridization by array (28)
Methylation profiling by array (19)
Other (18)
Unknown experiment type (13)
RNA-seq of non coding RNA (12)
ChIP-chip by tiling array (6)
Transcription profiling by tiling array (4)
Genotyping by array (4)
Transcription profiling by RT-PCR (4)
Proteomic profiling by array (4)
Methylation profiling by high throughput sequencing (4)
Cell line - High-throughput sequencing (3)
RIP-seq (3)
DNA-seq (3)
RNA-seq of coding RNA from single cells (3)
RNA-seq of total RNA (3)
RNAi profiling by array (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
Animal - One-color microarray (1)
One-color microarray (1)
Human - High-throughput sequencing (1)
Trajectory (1)
ChIP-chip by array (1)
ATAC-seq (1)
MicroRNA profiling by array (1)

Release Date

2015 (166)
2014 (124)
2013 (123)
2016 (119)
2022 (116)
2021 (116)
2010 (113)
2011 (98)
2023 (97)
2020 (95)
2025 (88)
2017 (81)
2008 (81)
2012 (78)
2024 (67)
2019 (66)
2018 (64)
2009 (46)
2007 (31)
2026 (16)
2006 (15)
2005 (8)
2004 (4)
2003 (4)
2002 (1)
2001 (1)
1999 (1)
1997 (1)

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Brain metastasis from lung adenocarcinoma patients

Microarray analysis of 28 brain metastasis samples from lung adenocarcinoma patients. 28 brain metastasis samples: 19 from Marc Ladanyi 9 from William L. Gerald

ORGANISM(S): Homo sapiens

2010-06-17 | E-GEOD-14108 | biostudies-arrayexpress

Chen2009 - ErbB Signaling

This is A431 IERMv1.0 model described in the article Input-output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data. William W Chen, Birgit Schoeberl, Paul J Jasper, Mario Niepel, Ulrik B Nielsen, Doug...

2024-09-02 | BIOMD0000000255 | BioModels

The complex genetics of hypoplastic left heart syndrome

Congenital heart disease (CHD) is a prevalent birth defect affecting up to 1% of live births. While a genetic etiology is indicated by increased recurrence risk and association with chromosomal abnormalities, the genetics of CHD is poorly understood and likely complex. Here we show hypoplastic left ...

ORGANISM(S): Mus musculus

2017-04-13 | GSE77799 | GEO

Gene expression characterization of high and low grade clear cell renal cell carcinoma

Patients undergoing either partial or radical nephrectomy at William Beaumont Hospital (Royal Oak, MI) were consented prior to surgery with local IRB oversight. Samples were collected at time of surgery and stored at -80Â°C according to CAP (College of American Pathologist)-accredited standard opera...

ORGANISM(S): Homo sapiens

2016-01-04 | E-GEOD-68417 | biostudies-arrayexpress

Enzymatic activity of PBP1B is required for growth rate-independent ppGpp-mediated resistance to PBP2 inhibitors in <i>E. coli</i>.

Not available

S-EPMC12826052 | biostudies-literature

Adaptation to pH stress by Vibrio fischeri can affect its symbiosis with the Hawaiian bobtail squid (Euprymna scolopes).

Not available

S-EPMC7376262 | biostudies-literature

Distinct Metabolic Signatures Linked to High-Resolution Computed Tomography Radiographic Phenotypes in Stable and Progressive Fibrotic Lung Disease.

Not available

S-EPMC12844244 | biostudies-literature

Gene expression profiling of patient's DCIS-IDC tandem lesions by RNA sequencing analysis

Tandem DCIS/IDC are defined as ductal carcicnoma in situ (DCIS) lesions that have concurrent invasive ductal carcinoma (IDC) within the same breast. These are identified radiologically by an area of clustered microcalcifications adjacent to (contiguous with) an invasive mass. Our radiologist (Dr. Wi...

ORGANISM(S): Homo sapiens

2015-02-26 | E-GEOD-66301 | biostudies-arrayexpress

Antiviral adhesion molecular mechanisms for influenza: W. G. Laver's lifetime obsession.

Not available

S-EPMC4275904 | biostudies-literature

Artesunate-mefloquine versus chloroquine for treatment of uncomplicated Plasmodium knowlesi malaria in Malaysia (ACT KNOW): an open-label, randomised controlled trial.

Not available

S-EPMC4753673 | biostudies-literature

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2093 Results

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