Williams Kim K - OmicsDI

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Unknown (886)
Transcriptomics (65)
Genomics (16)
Proteomics (5)
Metabolomics (2)

Organisms

Homo sapiens (27)
Mus musculus (13)
Gallus gallus (8)
Bacillus amyloliquefaciens (7)
Triticum aestivum (7)
Drosophila melanogaster (5)
Saccharomyces cerevisiae (3)
Arabidopsis thaliana (3)
Drosophila mojavensis (1)
Escherichia coli str. K-12 substr. W3110 (1)
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (1)
Taeniopygia guttata (1)
Fusarium graminearum (1)
Macaca mulatta (1)
Zea mays (1)
Oryza sativa (1)
Mycobacterium tuberculosis (1)
Salmo salar (1)
Bos taurus (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (71)
EGA (10)
pride (4)
MetaboLights (2)
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Tissue

Blood plasma (2)
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Disease

Melanoma (2)
Infiltrating ductal carcinoma (1)
Acute leukemia (1)
Brain cancer (1)
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Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
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Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Head and neck cancer (1)
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Malignant mesothelioma (1)
Neuroblastoma (1)
Pancreatic cancer (1)
Peripheral primitive neuroectodermal tumor (1)
Prostate adenocarcinoma (1)
Renal Wilms' tumor (1)
Retinal degeneration (1)
Retinoblastoma (1)
Septic shock (1)
Stomach cancer (1)
Synovial sarcoma (1)
Uveal melanoma (1)

Technology Type

Mass Spectrometry (4)
Mass spectrometry (2)
Bottom-up proteomics (2)
Shotgun proteomics (2)

Instrument Platform

Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
Illumina Genome Analyzer IIx (1)
GenePix 4000B [Axon Instruments] (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Q Exactive Plus (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Q Exactive (1)

Publication Date

2012 (13)
2010 (13)
2013 (8)
2005 (8)
2014 (6)
2011 (6)
2015 (5)
2009 (4)
2020 (3)
2022 (2)
2007 (2)
2024 (2)
2025 (2)
2026 (1)
2016 (1)
2008 (1)
2006 (1)

CHEBI ID

CHEBI:18344 (2)
CHEBI:27897 (2)
CHEBI:28044 (2)
CHEBI:28238 (2)
CHEBI:111517 (1)
CHEBI:116314 (1)
CHEBI:11805 (1)
CHEBI:12937 (1)
CHEBI:12962 (1)
CHEBI:131775 (1)
CHEBI:132477 (1)
CHEBI:132479 (1)
CHEBI:132948 (1)
CHEBI:132994 (1)
CHEBI:133005 (1)
CHEBI:133028 (1)
CHEBI:133032 (1)
CHEBI:133057 (1)
CHEBI:133066 (1)
CHEBI:133077 (1)
CHEBI:133092 (1)
CHEBI:133096 (1)
CHEBI:133115 (1)
CHEBI:133119 (1)
CHEBI:133139 (1)
CHEBI:133141 (1)
CHEBI:133144 (1)
CHEBI:133172 (1)
CHEBI:133176 (1)
CHEBI:133185 (1)

Metabolite Name

(R)-3-hydroxybutyrylcarnitine (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-arachidonoyl-GPI (20:4)* (1)
1-lignoceroyl-GPC (24:0) (1)
1-linoleoyl-GPE (18:2)* (1)
1-linoleoyl-GPI (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6)* (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2)* (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)* (1)
1-palmitoyl-2-arachidonoyl-GPI (16:0/20:4)* (1)
1-palmitoyl-2-docosahexaenoyl-GPC (16:0/22:6) (1)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6)* (1)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-2-oleoyl-GPI (16:0/18:1)* (1)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1)* (1)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (1)

Study type

Transcription profiling by array (45)
RNA-seq of coding RNA (10)
ChIP-seq (4)
ChIP-chip by tiling array (2)
ChIP-chip by array (2)
Methylation profiling by array (2)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (94)
2021 (92)
2024 (80)
2023 (80)
2025 (74)
2015 (68)
2020 (64)
2018 (64)
2016 (49)
2014 (46)
2019 (44)
2013 (40)
2012 (33)
2017 (32)
2011 (23)
2009 (19)
2026 (18)
2010 (18)
2005 (8)
2008 (6)
2007 (3)
2006 (1)
1998 (1)

Lab affiliation

Biological Engineering, MIT (1)
Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA; Neuroregeneration and Stem Cell Programs, Institute for Cell Engineering, Johns Hopkins University School of Medicine, Baltimore, MD, USA. (1)
Professor, Virology Director of the Laboratory of Molecular Virology (1)
Weill Cornell Medical College, New York City (1)

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Histone deacetylases positively regulate transcription through the elongation machinery

Global run-on sequencing (GRO-seq) analysis of breast cancer cells upon perturbations of transcription elongation regulators.

ORGANISM(S): Homo sapiens

2015-10-20 | E-MTAB-3626 | biostudies-arrayexpress

Regulation of hepatic autophagy by stress-sensing transcription factor CREBH.

Not available

S-EPMC6593881 | biostudies-literature

IMR90_SeV

Global run-on sequencing analysis of human fetal lung fibroblasts uninfected and infected with Sendai virus for 6 hour was performed to define key transcriptional changes that were induced upon infection at 6 hour time point.

ORGANISM(S): Homo sapiens

2014-10-28 | E-MTAB-2233 | biostudies-arrayexpress

Genome Sequences of Cluster K Mycobacteriophages Deby, LaterM, LilPharaoh, Paola, SgtBeansprout, and Sulley.

Not available

S-EPMC6328665 | biostudies-literature

Myo6 regulate transcriptional pause release

Global run-on sequencing analyses of murine T cells with or without Myosin VI were performed to determine the effect of anti-CD3 stimulation and loss of Myosin VI on the transcription elongation

ORGANISM(S): Mus musculus

2015-01-28 | E-MTAB-2381 | biostudies-arrayexpress

Fly Stampede 2.0: A Next Generation Optomotor Assay for Walking Behavior in Drosophila Melanogaster.

Not available

S-EPMC5214522 | biostudies-literature

Dietary pro-oxidant therapy by a vitamin K precursor targets PI 3-kinase VPS34 function.

Not available

S-EPMC11975464 | biostudies-literature

The Gastrointestinal Pain Pointer: A Valid and Innovative Method to Assess Gastrointestinal Symptoms.

Not available

S-EPMC4902787 | biostudies-literature

Whole genome sequence analysis of low-density lipoprotein cholesterol across 246 K individuals.

Not available

S-EPMC12418676 | biostudies-literature

Bacillus amyloliquefaciens FZB42 K-depleted root exudates

Transcription profiles of Bacillus amyloliquefacs FZB42 (cultured to an optical densit of 1.0 or 3.0) in response to root exudates from nutrient-sufficient maize plants and plants starved of nitrogen, phosphorus, potassium or iron.

ORGANISM(S): Bacillus amyloliquefaciens

2013-03-11 | E-MEXP-3795 | biostudies-arrayexpress

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974 Results

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