Wilson David I DI

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Unknown (58)
Transcriptomics (44)
Genomics (16)
Metabolomics (5)

Organisms

Homo sapiens (27)
Caenorhabditis elegans (23)
Ovis aries (3)
Mus musculus (3)
Bos taurus (1)
Candida albicans (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (45)
EGA (15)
MetaboLights (5)

Technology Type

Mass spectrometry (5)
Illumina HiSeq 2000 (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - positive - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
GenePix 4000A [Axon Instruments] (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Exactive (Thermo Scientific) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2010 (26)
2011 (4)
2023 (3)
2012 (3)
2016 (2)
2015 (2)
2008 (2)
2007 (2)
2018 (1)
2013 (1)
2006 (1)
2022 (1)
2021 (1)
2019 (1)

CHEBI ID

CHEBI:16449 (5)
CHEBI:17822 (4)
CHEBI:18186 (4)
CHEBI:16811 (4)
CHEBI:28300 (4)
CHEBI:26271 (3)
CHEBI:26986 (3)
CHEBI:28044 (3)
CHEBI:7916 (3)
CHEBI:27897 (3)
CHEBI:24266 (2)
CHEBI:73040 (2)
CHEBI:25094 (2)
CHEBI:18237 (2)
CHEBI:16040 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:27570 (2)
CHEBI:18257 (2)
CHEBI:9300 (2)
CHEBI:17724 (2)
CHEBI:73685 (2)
CHEBI:25017 (2)
CHEBI:16000 (2)
CHEBI:18243 (2)
CHEBI:28683 (2)
CHEBI:37024 (2)
CHEBI:16865 (2)
CHEBI:16335 (2)
CHEBI:27266 (2)

Metabolite Name

Methionine (2)
Tyrosine (2)
Serine (2)
Alanine (2)
Proline (2)
Phenylalanine (2)
5'-Adenylic acid, pentakis(trimethylsilyl) deriv. (1)
3-Methoxy-N,N,O-tris(trimethylsilyl)tyramine (1)
Metoprolol di-TMS derivative (1)
Propanolol TMS derivative (1)
Ricinoleic acid, trimethylsiloxy, trimethylsilyl ester (1)
N,O-Bis-(trimethylsilyl)-2-pyrrolidone carboxylic acid (1)
2-Piperidinecarboxylic acid, 1-(trimethylsilyl)-, trimethylsilyl ester (1)
Eicosane, 2-methyl- (1)
D-Glucuronic acid, 2,3,4,5-tetrakis-O-(trimethylsilyl)-, trimethylsilyl ester (1)
4-Propoxy-2-butanone (1)
L-Leucine, N-(trimethylsilyl)-, trimethylsilyl ester (1)
Alpha-D-Mannopyranose, 1,2,3,4,6-pentakis-O-(trimethylsilyl)- (1)
L-Valine, N-(trimethylsilyl)-, trimethylsilyl ester (1)
1-Cyclohexene-1-carboxylic acid, 3,4,5-tris[(trimethylsilyl)oxy]-, trimethylsilyl ester, [3R-(3 alpha,4 alpha,5 beta)]- (1)
L-Norleucine, N-(trimethylsilyl)-, trimethylsilyl ester (1)
Alpha-Naphthyl myristate (1)
Silanamine, N-[2-[3,4-bis[(trimethylsilyl)oxy]phenyl]ethyl]-1,1,1-trimethyl-N-(trimethylsilyl)- (1)
Sulfurous acid, dipropyl ester (1)
Phosphoric acid, 2-(trimethylsiloxy)-1-[(trimethylsiloxy)methyl]ethyl bis(trimethylsilyl) ester (1)
L-Aspartic acid, N-(trimethylsilyl)-, bis(trimethylsilyl) ester (1)
Heptadecane, 2,6-dimethyl- (1)
Butanoic acid, 2,4-bis[(trimethylsilyl)oxy]-, trimethylsilyl ester (1)
Succinic acid d4 (1)
1-Octanamine, n-octyl- (1)

Study type

Transcription profiling by tiling array (23)
Transcription profiling by array (13)
RNA-seq of coding RNA (4)
Unknown experiment type (3)
MicroRNA profiling by high throughput sequencing (1)
ChIP-seq (1)

Release Date

2010 (27)
2022 (13)
2021 (11)
2025 (7)
2024 (7)
2023 (6)
2015 (5)
2012 (4)
2011 (4)
2013 (3)
2016 (2)
2008 (2)
2007 (2)
2020 (2)
2019 (2)
2017 (2)
2014 (2)
2018 (1)
2006 (1)

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Transcriptome Analysis of Human Diabetic Kidney Disease (Control Glomeruli vs. Control Tubuli)

We identified 1,700 differentially expressed probesets in DKD glomeruli and 1,831 in diabetic tubuli; 330 probesets were commonly differentially expressed in both compartments. The canonical complement signaling pathway was determined to be statistically differentially regulated in both DKD glomerul...

ORGANISM(S): Homo sapiens

2011-08-02 | E-GEOD-30566 | biostudies-arrayexpress

Analysis of postnatal gene expression in a transgenic rat kidney

We have generated a transgenic rat model with postnatal pathology. In order to investigate the potential contribution of changes in kidney gene expression to the pathology, we have conducted microarray-based gene expression profiling of postnatal kidney. Rat kidneys were sampled at mid-day of post...

ORGANISM(S): Rattus norvegicus

2012-10-02 | E-GEOD-38595 | biostudies-arrayexpress

Transcriptome Analysis of Human Diabetic Kidney Disease

This SuperSeries is composed of the following subset Series: GSE30528: Transcriptome Analysis of Human Diabetic Kidney Disease (DKD Glomeruli vs. Control Glomeruli) GSE30529: Transcriptome Analysis of Human Diabetic Kidney Disease (DKD Tubuli vs. Control Tubuli) GSE30566: Transcriptome Analysis of H...

ORGANISM(S): Homo sapiens

2011-08-02 | E-GEOD-30122 | biostudies-arrayexpress

Metabolomics analysis reveals the participation of efflux pumps and ornithine in the response of Pseudomonas putida DOT-T1E cells to challenge with propranolol

Efflux pumps are critically important membrane components that play a crucial role in strain tolerance in Pseudomonas putida to antibiotics and aromatic hydrocarbons that result in these toxicants being expelled from the bacteria. Here, the effect of propranolol on P. putida was examined by sudden a...

2016-08-23 | MTBLS320 | MetaboLights

Transcriptome Analysis of Human Diabetic Kidney Disease (DKD Tubuli vs. Control Tubuli)

ORGANISM(S): Homo sapiens

2011-08-02 | E-GEOD-30529 | biostudies-arrayexpress

Transcriptome Analysis of Human Diabetic Kidney Disease (DKD Glomeruli vs. Control Glomeruli)

ORGANISM(S): Homo sapiens

2011-08-02 | E-GEOD-30528 | biostudies-arrayexpress

Transcription profiling of individual bovine nuclear transfer blastocysts

Individual zona free in vitro grown bovine day 7 blastocysts were compared to stage and quality matched nuclear transfer derived blastocysts (fibroblast donor cells).

ORGANISM(S): Bos taurus

2006-02-14 | E-MEXP-556 | biostudies-arrayexpress

The genomic complexity of early T-cell progenitor acute lymphoblastic leukemia

CREST

The accurate identification of structural variations using whole-genome DNA sequencing data generated by next-generation sequencing technology is extremely difficult. To address this challenge, we have developed CREST, an algorithm that uses sequencing reads with partial align...

phs000340.v2.p1 | EGA

Untargeted Metabolomics Reveals Molecular Effects of Ketogenic Diet on Healthy and Tumor Xenograft Mouse Models

The application of ketogenic diet (KD) (high fat/low carbohydrate/adequate protein) as an auxiliary cancer therapy is a field of growing attention. KD provides sufficient energy supply for healthy cells, while possibly impairing energy production in highly glycolytic tumor cells. Moreover, KD regula...

2019-10-08 | MTBLS1066 | MetaboLights

Transcription profiling of mouse mesangial cell line MES-13 to examine the global effects of high glucose (HG) and glucosamine (GlcN) on the transcriptome.

The renal mesangial cells play an important role in the development of diabetic glomerulosclerosis and renal failure. We have previously demonstrated some of the effects of high glucose are mediated via the hexosamine biosynthesis pathway (HBP) in which fructose-6-phosphate is converted to glucosami...

ORGANISM(S): Mus musculus

2007-12-01 | E-GEOD-2557 | biostudies-arrayexpress

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123 Results

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