Wolf E E - OmicsDI

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Unknown (2640)
Transcriptomics (161)
Proteomics (125)
Genomics (86)
Metabolomics (20)
Models (11)
Genomic (2)
Clinical (1)

Organisms

Homo sapiens (139)
Aerococcus urinae NBRC 15544 = CCUG 36881 (118)
Andropogon gerardi (118)
Bacteria (118)
Mus musculus (61)
Daphnia pulex (9)
Bos taurus (6)
Arabidopsis thaliana (6)
Actinoplanes sp. SE50/110 (5)
Plasmodium falciparum 3D7 (3)
Sus scrofa (3)
Saccharomyces cerevisiae (2)
Equus caballus (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 (1)
Thalassiosira hyalina (1)
Euglena gracilis (1)
Macaca mulatta (1)
Yersinia pseudotuberculosis (1)
Bacillus anthracis (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Staphylococcus aureus (1)
Pseudomonas aeruginosa UCBPP-PA14 (1)
Solanum tuberosum (1)
Plasmodium falciparum (1)
Canis lupus familiaris (1)
Plasmodium falciparum 7G8 (1)
Candida albicans (1)
Rattus norvegicus (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Organisms

Escherichia coli str. K-12 substr. MG1655 (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (177)
pride (118)
EGA (64)
MetaboLights (20)
BioModels (10)
MassIVE (5)
ENA (4)
dbGaP (2)
geo (2)
FAIRDOMHub (1)
jPOST (1)
PanoramaPublic (1)

Tissue

Cell culture (22)
Blood (8)
Epithelial cell (8)
Heart (8)
Bone marrow (7)
Blood cell (5)
Macrophage (5)
Skeletal muscle (5)
B cell (4)
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Cell suspension culture (3)
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Monocyte (3)
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Colon (2)
Embryo (2)
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Hepatocyte (2)
Leaf (2)
Lung (2)
Pluripotent stem cell (2)
Primary cell (2)
Skin (2)
Tail (2)
1321-N1 cell (1)
HCT-116 cell (1)

Disease

Acute leukemia (9)
Duchenne muscular dystrophy (5)
Acute myeloid leukemia (4)
Lymphoma (3)
Multiple myeloma (3)
Diabetes mellitus (2)
Laron syndrome (2)
Permanent neonatal diabetes mellitus (2)
Severe acute respiratory syndrome (2)
Primary bacterial infectious disease (1)
Hodgkin's lymphoma (1)
Mature T-cell and NK-cell lymphoma (1)
Mantle cell lymphoma (1)
Pancreatic tumor (1)
Glioblastoma (1)
Normal (1)
Cataract (1)
Alzheimer's disease (1)
Bone cancer (1)
Bone osteosarcoma (1)
Cardiovascular system disease (1)
Colon cancer (1)
Diabetes mellitus (1)
Disease free (1)
Human cytomegalovirus infection (1)
Leigh disease (1)
Lung carcinoma (1)
Malignant neoplasm of ovary (1)
Myelodysplastic/myeloproliferative neoplasm (1)
Neuroblastoma (1)

Technology Type

Mass Spectrometry (118)
Shotgun proteomics (67)
Mass spectrometry (19)
Bottom-up proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (16)
Data-dependent acquisition (12)
Gel-based experiment (9)
Data-independent acquisition (7)
SWATH MS (4)
NMR spectroscopy (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
RNA mass spectrometry (2)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0- (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Affymetrix 6.0 (1)
Mass spectrometry assay (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (10)
Liquid Chromatography MS - positive - reverse phase (9)
Illumina NovaSeq 6000 (5)
NextSeq 500 (4)
Illumina HiSeq 2500 (3)
Illumina HiSeq 4000 (3)
TSQ Vantage (Thermo Scientific) (3)
Illumina MiSeq (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
Thermo Scientific LTQ FT Ultra (2)
Nuclear Magnetic Resonance (NMR) - (2)
Agilent TapeStation (1)
Nanodrop 2000c spectrophotometer (1)
Element AVITI (1)
10X Genomics Chromium Controller (1)
TruSeq HT paired end kit (1)
Ultracentrifuge (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Illumina Genome Analyzer IIx (1)
None (1)
- (1)
DNBSEQ-G400 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Orbitrap Fusion Lumos ETD (Thermo Scientific instrument model) (1)
Q Exactive (1)
Q Exactive HF (1)

Publication Date

2022 (31)
2014 (27)
2013 (26)
2024 (23)
2020 (23)
2015 (22)
2010 (22)
2016 (20)
2025 (19)
2023 (18)
2026 (17)
2011 (16)
2008 (14)
2021 (13)
2019 (9)
2017 (9)
2018 (8)
2009 (6)
2012 (5)
2007 (4)
2006 (2)

UNIPROT ID/AC

P42230 (2)
P20963 (2)
P35225 (2)
P78552 (2)
P29597 (2)
P29351 (2)
Q62120 (2)
P07321 (2)
P14753 (2)
P29350 (2)
P24394 (2)
P42229 (2)
P51692 (2)
O60674 (2)
Q62225 (1)
O35718 (1)
Q14627 (1)
P63085 (1)
Q63844 (1)
P31938 (1)
Q63932 (1)
Q99N57 (1)
Q62245 (1)
P42232 (1)
Q9NSE2 (1)
O14543 (1)

CHEBI ID

CHEBI:26271 (6)
CHEBI:27897 (6)
CHEBI:15354 (6)
CHEBI:16811 (5)
CHEBI:32816 (4)
CHEBI:33699 (3)
CHEBI:17794 (3)
CHEBI:15422 (2)
CHEBI:15846 (2)
CHEBI:33697 (1)
CHEBI:17234 (1)
CHEBI:16905 (1)
CHEBI:15343 (1)
CHEBI:16908 (1)
CHEBI:17980 (1)
CHEBI:16761 (1)
CHEBI:16136 (1)
CHEBI:16189 (1)
CHEBI:17709 (1)
CHEBI:16108 (1)
CHEBI:29052 (1)
CHEBI:17561 (1)
CHEBI:15377 (1)
CHEBI:24636 (1)
CHEBI:16236 (1)
CHEBI:15379 (1)
CHEBI:16288 (1)
CHEBI:18361 (1)
CHEBI:15351 (1)
CHEBI:15361 (1)

Metabolite Name

Methionine (3)
Lactate (3)
2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA) (2)
N-(phenylacetyl) aspartic acid (2)
L-leucine (2)
L-isoleucine (2)
Tryptophan (2)
Taurine (2)
Serine (2)
Proline (2)
Malate (2)
Guanosine (2)
Arginine (2)
Histidine (2)
Xanthine (2)
Phenylalanine (2)
Fumarate (2)
Succinate (2)
Pyruvate (2)
Uracil (2)
Spermidine (2)
4-hydroxybenzoic acid (2)
4-Trimethylammoniobutanoate (2)
Apigenin (2)
Choline (2)
LPC 18:1 (2)
LPC 18:0 (2)
LPC 18:2 (2)
LPC 16:0 (2)
L-Tryptophan (2)

First Public Date

2023 (1)
2022 (1)
2020 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (10)

Study status

Recruiting (1)

Lab affiliation

Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (8)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (5)
Laboratory for Functional Genome Analysis (LAFUGA), Gene Center, LMU Munich, 81377 Munich, Germany (5)
Weizmann Institute of Science (5)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (3)
Dept. of Laboratory Medicine, University of California, San Francisco, CA (3)
Cancer Systems Biology Group, Theodor Boveri Institute, University of Würzburg, Am Hubland, 97074 Würzburg, Germany (2)
Department of Chemical and Physical Sciences, University of Toronto Mississauga, Mississauga, Canada (2)
Dept. of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel (2)
Institute of Biochemistry, University of Kiel (2)
Laboratory for Functional Genome Analysis Genzentrum Ludwig-Maximilians-Universität München Feodor-Lynen-Str. 25 D-81377 München Germany (2)
1. CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria 2. Center for Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria (1)
1Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, Ontario M5S 3E1, Canada 2Department of Molecular Genetics, University of Toronto, 1 King's College Circle, Toronto, Ontario M5S 1A8, Canada Departments of Biochemistry and Biology, Boston University, 71 E. Concord St, Boston, MA 02118, USA (1)
Agricultural and Plant Biochemistry and Proteomics Research Group, Dept. of Biochemistry and Molecular Biology, University of Cordoba, Agrifood Campus of International Excellence (ceiA3), 14071 Cordoba, Spain (1)
Agriculture and Agrifood Canada Morden Research and Development Centre (1)
Associate Research Professor, Institut de recherches cliniques de Montréal (IRCM) Professeure agrégée, Département de biochimie et médecine moléculaire, Université de Montréal Associate Professor, Division of Experimental Medicine, McGill University (1)
BioArCh, Department of Archaeology, University of York (1)
Biomolecular Mass Spectrometry and Proteomics Group, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, The Netherlands; Netherlands Proteomics Centre and Cancer Genomics Centre, 3584 CH Utrecht, The Netherlands; Mass Spectrometry/Proteomics Facility, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, The Netherlands. (1)
Buchmann Institute of Molecular Life Sciences and Institute of Biophysical Chemistry, Goethe University, Frankfurt am Main, Germany (1)
Center for Cancer Research, Massachusetts General Hospital, Boston MA, USA;Department of Chemistry and Chemical Biology, Harvard University, Cambridge MA, USA. (1)
Center for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA USA (1)
Center for Plant Molecular Biology (ZMBP) Plant Physiology University of Tübingen Tübingen Germany (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (1)
Chair of Animal Physiology, Veterinary Sciences, LMU Munich, Germany (1)
Charite Ophthalmology / MDC Cellular Neuroscience (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICAS UNIVERSIDADE NOVA DE LISBOA Rua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal E-mail: rune.matthiesen@nms.unl.pt | www.nms.unl.pt (1)
Core Unit Proteomics, Berlin Institute of Health at Charite - Universitaetsmedizin Berlin and Max-Delbrueck-Center for Molecular Medicine, Berlin, Germany (1)
Department of Biochemistry Stanford Cancer Institute Stanford University Stanford, CA 94305, USA (1)
Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (1)
Department of Biosciences, University of Salzburg (1)

Keyword

Neglected Diseases (1)
Orphan Diseases (1)
Rare Disease Research (1)
Registries (1)
Batten Disease (1)
Mucolipidosis IV (1)
Undiagnosed (1)
Uncommon Disease (1)
Hypersomnia (1)
Marinesco-Sjogren Syndrome (1)
4p-/Wolf-Hirschhorn Syndrome (1)
Wiedermann-Steiner Syndrome (1)
Hemophagocytic Lymphohistiocytosis (HLH) (1)
Behcet’s Disease (1)
Jansen metaphyseal chondrodysplasia (1)
Chronic recurrent multifocal osteomyelitis (CRMO) (1)
Hereditary Sensory and Autonomic Neuropathy (1)
Nephropathic infantile cystinosis (1)
Ocular cystinosis (1)
Spinal Bulbar Muscular Atrophy (SBMA) (1)
Mucolipidosis (1)
Mitochondrial aminoacyl-tRNA synthetases (Mt-aaRS Disorders) (1)
Shine Syndrome (1)
Intestinal Bromhidrosis Syndrome (1)
Autosomal recessive extra oral halitosis (1)
CACNA1H mutation (1)
Dimethylglycine dehydrogenase deficiency (1)

IsPrivate

False (10)

Classification

bacteria (1)

Modification

4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (90)
RNA-seq of coding RNA (33)
ChIP-seq (9)
Methylation profiling by array (9)
Methylation profiling by high throughput sequencing (7)
Transcription profiling by tiling array (4)
Comparative genomic hybridization by array (4)
RNA-seq of coding RNA from single cells (4)
RNA-seq of non coding RNA (4)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
Genotyping by array (2)
DNA-seq (2)
Cell line - Single-cell sequencing (1)
Trajectory (1)
ChIP-chip by array (1)
Other (1)
RNA-seq of total RNA (1)
Observational patient registry (1)

Release Date

2022 (316)
2021 (277)
2025 (269)
2023 (268)
2024 (247)
2020 (216)
2018 (162)
2019 (159)
2014 (128)
2017 (126)
2016 (124)
2015 (115)
2013 (87)
2012 (60)
2011 (60)
2010 (56)
2026 (46)
2009 (35)
2008 (28)
2007 (11)
2006 (10)
2004 (5)
2000 (4)
2001 (3)
2003 (2)
2002 (2)
1999 (1)

Location

Australia (1)
United States (1)

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Molecular Identification and Characterization of a Genotype 3 Hepatitis E Virus (HEV) Strain Detected in a Wolf Faecal Sample, Italy.

Not available

S-EPMC8698176 | biostudies-literature

Transcriptional expression level of E. coli at 37 ℃ in LB media

In order to understand the impact of fitness effect on genome evolution, we measured gene expression level by directional RNA-seq of E. coli grown at 37 ℃ in LB media because it is known that gene expression level has correlation with sequence evolution rate (Koonin & Wolf, 2006).

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2017-03-25 | GSE67218 | GEO

Genomic evidence for the Old divergence of Southern European wolf populations.

Not available

S-EPMC7423677 | biostudies-literature

Comparing Genetic <i>N<sub>e</sub></i> Reconstructions Over Time With Long-Time Wolf Monitoring Data in Two Populations.

Not available

S-EPMC11486914 | biostudies-literature

Viral gut metagenomics of sympatric wild and domestic canids, and monitoring of viruses: Insights from an endangered wolf population.

Not available

S-EPMC5478050 | biostudies-literature

Wolf contact in horses at permanent pasture in Germany.