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TranscriptomicsscRNA-seq from Trex1 KO in tumor
Single-cell RNA-seq data for Trex1 WT and KO mice from the tumor. Used for manuscript in submission at Science Advances.
ORGANISM(S): Mus musculus 
2026-03-25 | E-MTAB-16526 | biostudies-arrayexpress
TranscriptomicsscRNA-seq from Trex1 KO in heart
Single-cell RNA-seq data for Trex1 WT and KO mice from the heart. Used for manuscript in submission at Science Advances.
ORGANISM(S): Mus musculus 
2026-03-25 | E-MTAB-16525 | biostudies-arrayexpress
TranscriptomicsGene profile analysis of sorted Sca1+/cKit- BMCs obtained from young and aged mice bearing tumor or not
Sca1+/cKit– hematopoietic BMCs of hosts bearing primary tumors promote the growth of distant tumors that form with a myofibroblast-rich, desmoplastic stroma. BMCs from old mice bearing primary tumors lack this ability Sca1+/cKit- BMCs were isolated from young and old mice bearing Matrigel control ...
ORGANISM(S): Mus musculus 
2016-07-21 | E-GEOD-74120 | biostudies-arrayexpress
TranscriptomicsmicroRNAs involved in regulating embolic stroke recovery following spontaneous reperfusion [miRNA]
To date, miRNA expression studies on cerebral ischemia in both human and animal models have focused mainly on acute phase of ischemic stroke. In this study, we present the roles played by microRNAs in the spontaneous recovery phases in cerebral ischemia using rodent stroke models. In this study pres...
ORGANISM(S): Rattus norvegicus 
2013-12-09 | E-GEOD-46266 | biostudies-arrayexpress
TranscriptomicsmiRNAs involved in regulating embolic stroke recovery following spontaneous reperfusion
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Rattus norvegicus 
2013-12-09 | E-GEOD-46269 | biostudies-arrayexpress
GenomicsGlobal Transcriptome Analysis and Enhancer Landscape of Human Primary T Follicular Helper and T Effector Lymphocytes (ChIP-Seq)
T follicular helper (Tfh) cells are a subset of CD4+ T helper (Th) cells that migrate into germinal centers and promote B cell maturation into memory B and plasma cells. Tfh cells are necessary for promotion of protective humoral immunity following pathogen challenge, but when aberrantly regulated, ...
ORGANISM(S): Homo sapiens 
2014-10-27 | E-GEOD-58595 | biostudies-arrayexpress
TranscriptomicsNFAT-dependent IL-2 and IL-23 produced by DC are key regulators of pathogenic (TH17-mediated lung inflammation)
Calcineurin/NFAT/IL-2 signaling pathway is activated in dendritic cells (DC) upon encounter of β glucan, the main component of the fungal cell wall, raising the question about the role of NFAT-regulated genes in DC biology in vivo. To directly assess the function of IL-2 secreted by DC, we analyzed...
ORGANISM(S): Mus musculus 
2015-12-21 | E-GEOD-58590 | biostudies-arrayexpress
ProteomicsGo_BioID_humancellmap_HEK293_prediction_2019
This dataset consists of 94 raw MS files and associated peak lists and result files, acquired on Velos Orbitrap Elite mass spectrometer operated in Data Dependent Acquisition mode. All samples are BioID experiments, performed in HEK293 Flp-In T-REx cells for confirmation of localization predictions...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000084369 | MassIVE
ProteomicsGo_BioID_humancellmap_HEK293_highSDS_2019
This dataset consists of 404 raw MS files and associated peak lists and result files, acquired on Velos Orbitrap Elite mass spectrometer operated in Data Dependent Acquisition mode. All samples are BioID experiments, performed in HEK293 Flp-In T-REx cells from organellar and other subcellular marke...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000084360 | MassIVE
ProteomicsGo_BioID_humancellmap_HEK293_lowSDS_2019
This dataset consists of 68 raw MS files and associated peak lists and result files, acquired on Velos Orbitrap Elite mass spectrometer operated in Data Dependent Acquisition mode. All samples are BioID experiments, performed in HEK293 Flp-In T-REx cells from organellar and other subcellular marker...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000084359 | MassIVE
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