Woo J J - OmicsDI

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Unknown (2207)
Proteomics (90)
Transcriptomics (40)
Metabolomics (11)
Genomics (6)
Other (2)
Models (1)
Genomic (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (43)
Andropogon gerardi (43)
Bacteria (43)
Bartonella quintana JK 31 (43)
Canis lupus familiaris (43)
Cnidaria (43)
Ectopseudomonas oleovorans CECT 5344 (43)
Ensifer adhaerens (43)
Halictus scabiosae (43)
Human immunodeficiency virus 1 (43)
Mesocricetus auratus (43)
Methylohalobius crimeensis 10Ki (43)
Miscanthus x giganteus (43)
Mus musculus (43)
Panicum virgatum (43)
Pseudomonas aeruginosa SJTD-1 (43)
Rabies virus Nishigahara RCEH (43)
Rattus norvegicus (43)
Rattus rattus (43)
Rhodococcus jostii RHA1 (43)
Rhodopseudomonas palustris (43)
Schizosaccharomyces pombe 927 (43)
Sorghastrum nutans (43)
Homo sapiens (29)
Mus musculus (10)
Arabidopsis thaliana (8)
Danio rerio (4)
Lepidium sativum (2)
Severe acute respiratory syndrome coronavirus 2 (1)
Eimeria tenella (1)

Repository

biostudies-arrayexpress (43)
pride (43)
PAXDB (18)
PeptideAtlas (18)
MetaboLights (7)
MassIVE (6)
GNPS (4)
EGA (3)
GPMDB (2)
jPOST (2)
PanoramaPublic (2)
BioModels (1)
dbGaP (1)
iProX (1)

Tissue

Cell culture (10)
Brain (8)
Breast (4)
Permanent cell line cell (4)
Macrophage (3)
Astrocyte (2)
Blood cell (2)
Blood plasma (2)
Epithelial cell (2)
T cell (2)
B cell (1)
Bone marrow (1)
Breast cancer cell line (1)
Brown adipose tissue (1)
Cerebral cortex neuron (1)
Cyst (1)
Diploid cell (1)
Erythrocyte (1)
Granule cell (1)
Hippocampal neuron (1)
Hippocampus (1)
Insulin secreting cell (1)
Purkinje cell (1)
Small intestine (1)
Tear (1)
Urinary bladder (1)

Disease

Alzheimer's disease (7)
Breast cancer (5)
Not Available (2)
Wounds and Injuries (2)
COVID-19 (1)
Acute myeloid leukemia (1)
Alcohol (1)
Bladder transitional cell carcinoma (1)
Breast secretory carcinoma (1)
Cardiovascular system disease (1)
Colon cancer (1)
Disease free (1)
Inflammation (1)
Mental depression (1)
Neuroblastoma (1)
Neurodegenerative disease (1)
Obesity (1)
Pancreatic intraductal papillary-mucinous neoplasm (1)

Technology Type

Mass Spectrometry (43)
Shotgun proteomics (34)
Mass spectrometry (5)
Bottom-up proteomics (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Gel-based experiment (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Data-dependent acquisition (1)
SRM/MRM (1)

Instrument Platform

Agilent Q-ToF (15)
Xevo G2 Q-Tof (5)
LTQ Orbitrap Velos (3)
Instrument (2)
Q Exactive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Unix (1)
Illumina HiSeq 2500 (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
QExactive (1)

Publication Date

2014 (39)
2024 (10)
2012 (10)
2020 (9)
2018 (9)
2013 (8)
2019 (8)
2017 (6)
2015 (6)
2025 (6)
2023 (6)
2022 (6)
2011 (4)
2010 (4)
2008 (3)
2021 (3)
2007 (2)
2016 (1)
2009 (1)
2004 (1)
2026 (1)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
7955.ENSDARP00000102682 (15)
7955.ENSDARP00000102749 (15)
7955.ENSDARP00000102775 (15)
7955.ENSDARP00000103208 (15)
7955.ENSDARP00000103318 (15)
7955.ENSDARP00000103819 (15)
7955.ENSDARP00000104168 (15)
7955.ENSDARP00000104379 (15)
7955.ENSDARP00000104630 (15)

ENSEMBL ID

ENSDARG00000000103 (17)
ENSDARG00000001431 (17)
ENSDARG00000001915 (17)
ENSDARG00000001950 (17)
ENSDARG00000001993 (17)
ENSDARG00000002480 (17)
ENSDARG00000005039 (17)
ENSDARG00000005560 (17)
ENSDARG00000005791 (17)
ENSDARG00000006399 (17)
ENSDARG00000007219 (17)
ENSDARG00000009285 (17)
ENSDARG00000009484 (17)
ENSDARG00000010149 (17)
ENSDARG00000013078 (17)
ENSDARG00000016301 (17)
ENSDARG00000016393 (17)
ENSDARG00000017014 (17)
ENSDARG00000017624 (17)
ENSDARG00000018404 (17)
ENSDARG00000021124 (17)
ENSDARG00000022767 (17)
ENSDARG00000023323 (17)
ENSDARG00000025012 (17)
ENSDARG00000025301 (17)
ENSDARG00000025350 (17)
ENSDARG00000025635 (17)
ENSDARG00000027355 (17)
ENSDARG00000029406 (17)
ENSDARG00000031164 (17)

CHEBI ID

CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:16865 (3)
CHEBI:18019 (3)
CHEBI:16828 (3)
CHEBI:30769 (3)
CHEBI:52023 (2)
CHEBI:17626 (2)
CHEBI:15584 (2)
CHEBI:18101 (2)
CHEBI:9907 (2)
CHEBI:16856 (2)
CHEBI:16525 (2)
CHEBI:16283 (2)
CHEBI:16977 (2)
CHEBI:15699 (2)
CHEBI:17148 (2)
CHEBI:6650 (2)
CHEBI:28044 (2)
CHEBI:17497 (2)
CHEBI:37024 (2)
CHEBI:17196 (2)
CHEBI:17115 (2)
CHEBI:30763 (2)
CHEBI:15940 (2)
CHEBI:16467 (2)
CHEBI:17203 (2)
CHEBI:18183 (2)
CHEBI:28834 (2)
CHEBI:15999 (2)

Metabolite Name

Inosine (2)
Choline (2)
Glycine (2)
Citric acid (2)
L-lysine (2)
L-Tryptophan (2)
Citrate(1-) (1)
Aspartate(1-) (1)
3-3-Hydroxyphenyl-3-hydroxypropanoic acid (1)
2-methyl-Butanoic acid (1)
Keto-D-fructose 6-phosphate (1)
3-sulfopyruvic acid (1)
Palmitoyl-CoA (1)
Keto-phenylpyruvate (1)
Menadione (1)
7H-purine (1)
Isocaproic acid (1)
N(2)-acetyl-L-lysine (1)
Beta-cellobiose (1)
NMN zwitterion (1)
Alpha-D-Glcp-(1->4)-alpha-D-Glcp-(1->4)-D-Glcp (1)
Thiamine(1+) diphosphate (1)
UDP-alpha-D-glucuronic acid (1)
2,3-bisphospho-D-glyceric acid (1)
Molybdate (1)
Alpha-D-galacturonic acid (1)
3-hydroxy-1-benzopyran-2-one (1)
3'-dephospho-CoA (1)
Geranyl diphosphate (1)
Isobutyryl-CoA (1)

IsPrivate

False (1)

Submitter Keywords

COVID-19 (1)

Modelling Approach

Population model (1)

Study type

Transcription profiling by array (25)
Methylation profiling by array (4)
RNA-seq of coding RNA (3)
Unknown experiment type (2)
Transcription profiling by tiling array (2)
Comparative genomic hybridization by array (2)
ChIP-seq (2)
RNA-seq of non coding RNA (2)
DNA-seq (1)

Release Date

2025 (255)
2022 (252)
2023 (230)
2021 (229)
2024 (195)
2020 (179)
2019 (142)
2018 (116)
2016 (115)
2017 (105)
2015 (105)
2014 (75)
2013 (54)
2026 (43)
2012 (41)
2010 (28)
2011 (26)
2008 (17)
2009 (16)
2007 (9)
2006 (7)
2002 (4)
2004 (2)
2005 (2)
2000 (1)
1999 (1)
1996 (1)

Lab affiliation

Department of Chemistry and Chemical Biology, Harvard University (4)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (3)
Center for Translational Biomedical Research, University of North Carolina at Greensboro (2)
Department of Biotechnology, Stem cell and biomaterial engineering Lab, Yonsei University, Republic of Korea. (2)
Departments of Biomedical Sciences, Seoul National University, Seoul, Korea (2)
Proteomics core facility, Seoul National University Hospital (2)
1. Center for Translational Biomedical Research, University of North Carolina at Greensboro 2. Department of Chemistry & Biochemistry, University of North Carolina at Greensboro (1)
Baylor College of Medicine Houston, Texas (1)
Cancer Sciences Faculty of Medicine University of Southampton (1)
Center for Translational Biomedical Research, The University of North Carolina at Greensboro. (1)
Center for Translational Biomedical Research, University of North Carolina at Greensboro, North Carolina Research Campus, Kannapolis, NC 28081 (1)
Center for Translational Biomedical Research, University of North Carolina at Greensboro, North Carolina Research Campus, Kannapolis, North Carolina 27402, United States; Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, North Carolina 28081, United States (1)
Chemistry & Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138 and Department of Microbiology, Harvard Medical School, 4 Blackfan Circle, Boston, MA 02115 (1)
Department of Brain Sciences, Daegu Gyeongbuk Institute of Science & Technology (1)
Department of Center for Translational Biomedical Research at University of North Carolina at Greensboro, Kannapolis, NC, 28087 (1)
Department of Chemistry and Chemical Biology, Harvard University, Cambridge MA, 02138 (1)
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, 02138 (1)
Department of Chemistry and Chemical Biology, Woo Lab, Harvard University, US (1)
Department of Chemistry, Seoul National University, Seoul 08826, Korea (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (1)
Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR USA (1)
Department of Pharmacology and Pharmacy, Li Ka Shing Faculty of Medicine, The University of Hong Kong (1)
Harvard University (1)
Instituto de Acuicultura Torre de la Sal (IATS-CSIC), 12595 Ribera de Cabanes, Castellón, Spain (1)
Johns Hopkins School of Medicine (1)
Johns Hopkins University (1)
Pacific Northwest National Laboratory (1)
Proteomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (1)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital, 101 Daehak-ro, Seoul, Korea (1)
Proteomics core facility, Biomedical research institute, Seoul National University Hospital (1)

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Small molecule interactome mapping by photo-affinity labeling (SIM-PAL)

Non-steroidal anti-inflammatory drugs (NSAIDs) are one of the most common pharmaceutical agents in the world. However, despite well-studied interactions with cyclooxygenase-2, little is known about the broader proteomic interactions and additional mechanisms that the NSAIDs elicit. Here we present a...

ORGANISM(S): Homo sapiens (Human)

2019-01-25 | PXD007094 | Pride

Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

A CREB-mediated increase in miRNA let-7f during prolonged β-agonist exposure: a novel mechanism of β2-adrenergic receptor down-regulation in airway smooth muscle.

Not available

S-EPMC5998966 | biostudies-literature

Differential long-term regulation of TAS2R14 by structurally distinct agonists.

Not available

S-EPMC6902689 | biostudies-literature

Phase II Trial and Correlative Genomic Analysis of Everolimus Plus Bevacizumab in Advanced Non-Clear Cell Renal Cell Carcinoma.

Not available

S-EPMC5791841 | biostudies-literature

Dual role of cofilin in APP trafficking and amyloid-β clearance.

Not available