Woods J J - OmicsDI

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Unknown (2370)
Transcriptomics (60)
Proteomics (45)
Metabolomics (35)
Genomics (12)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (41)
Andropogon gerardi (41)
Bacteria (41)
Canis lupus familiaris (41)
Cnidaria (41)
Homo sapiens (24)
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Linum usitatissimum (3)
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Acacia koa (1)
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Schizophyllum commune (1)
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Eucalyptus globulus (1)
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Populus tremula x Populus alba (1)
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Phyllostachys edulis (1)

Organisms

Phyllostachys edulis (1)

Repository

biostudies-arrayexpress (67)
pride (41)
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Tissue

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Disease

Disease free (7)
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Technology Type

Mass Spectrometry (41)
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Instrument Platform

TSQ Vantage (Thermo Scientific) (8)
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Liquid Chromatography MS - positive - reverse phase (4)
ArrayWoRx Biochip Reader [Applied Precision] (2)
Illumina HiSeq 2000 (2)
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Orbitrap Fusion (2)
6530 Q-TOF LC/MS (Agilent) (2)
LTQ FT Ultra (Thermo Scientific) (2)
7T LTQ FT Ultra, Thermo Fisher Scientific (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Pacbio Revio (1)
PromethION (1)
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LTQ Orbitrap (1)
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LTQ Orbitrap Classic (Thermo Scientific) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - alternating - hilic (1)
Gas Chromatography MS - (1)

Publication Date

2026 (15)
2023 (13)
2016 (12)
2015 (12)
2009 (12)
2013 (10)
2024 (9)
2022 (9)
2019 (8)
2021 (7)
2014 (5)
2011 (5)
2020 (5)
2012 (4)
2010 (4)
2025 (4)
2018 (4)
2008 (3)
2007 (3)
2017 (3)
2006 (1)

CHEBI ID

CHEBI:28044 (16)
CHEBI:27897 (15)
CHEBI:7916 (14)
CHEBI:16335 (14)
CHEBI:16750 (14)
CHEBI:17596 (14)
CHEBI:26271 (13)
CHEBI:30769 (13)
CHEBI:22660 (12)
CHEBI:25017 (12)
CHEBI:24898 (12)
CHEBI:16865 (12)
CHEBI:30763 (12)
CHEBI:29016 (12)
CHEBI:17509 (12)
CHEBI:16027 (12)
CHEBI:15741 (12)
CHEBI:6650 (12)
CHEBI:17015 (12)
CHEBI:18211 (11)
CHEBI:16610 (11)
CHEBI:17148 (11)
CHEBI:30753 (11)
CHEBI:28300 (11)
CHEBI:16457 (10)
CHEBI:84373 (10)
CHEBI:18107 (10)
CHEBI:16765 (10)
CHEBI:15354 (10)
CHEBI:16811 (10)

Metabolite Name

Guanosine (9)
Phenylalanine (8)
Tryptophan (8)
4-hydroxybenzoic acid (7)
Xanthosine (7)
Xanthine (7)
Proline (7)
Isoleucine (7)
Inosine (7)
Syringic acid (6)
Chitotriose (6)
Pantothenic acid (6)
Malic acid (6)
Glutamic acid (6)
Aspartic acid (6)
Citric acid (6)
Ornithine (6)
Leucine (6)
Guanine (6)
Glutamine (6)
Citrulline (6)
Arginine (6)
Adenosine (6)
Succinic acid (6)
Adenine (6)
2,3-dihydroxypropane-1-sulfonate (5)
Sn-glycerol 3-phosphate (5)
Homoserine (5)
Spermidine (5)
4-aminobenzoic acid (5)

First Public Date

2021 (1)

Modification

Not available (2)
4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (39)
RNA-seq of coding RNA (10)
ChIP-seq (6)
RNA-seq of non coding RNA (4)
Comparative genomic hybridization by array (2)
DNA-seq (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)

Release Date

2022 (268)
2023 (263)
2021 (245)
2025 (230)
2024 (213)
2020 (182)
2019 (146)
2018 (129)
2015 (116)
2017 (115)
2016 (105)
2014 (71)
2013 (60)
2011 (46)
2009 (46)
2012 (42)
2010 (42)
2026 (33)
2008 (22)
2007 (14)
2006 (12)
2005 (9)
2003 (7)
2002 (7)
1999 (4)
2004 (3)
2000 (3)
2001 (2)
1998 (2)

Lab affiliation

Molecular and Cellular Biology, University of Guelph, Canada (2)
1. School of Natural Sciences, Macquarie University, Sydney, NSW 2109, Australia 2. Institute for Glyco-core Research (iGCORE), Nagoya University, Nagoya, Japan (1)
Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Univeristy of Cambridge, UK (1)
Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge, UK (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Lazarettgasse 14, AKH BT 25.3 1090 Vienna, Austria (1)
Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine, Boston, MA 02118, United States of America (1)
Centre for Molecular Medicine Norway (1)
Department of Biochemistry Stanford Cancer Institute Stanford University Stanford, CA 94305, USA (1)
Department of Biological Chemistry, Alexander Silverman Institute of Life Sciences, The Edmond J. Safra Campus, The Hebrew University of Jerusalem, Jerusalem, 9190401, Israel. (lab head) (1)
Department of Biology,Watson Building 207, MS #52, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA (1)
Department of Cell Biology, Harvard Medical School, Boston, MA, USA (1)
Department of Chemistry & Biomolecular Science Clarkson University, Potsdam, NY, 13699, Box 5810 (1)
Department of Genome Sciences, University of Washington, Seattle, WA, United States (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic (1)
Department of Life Sciences and Systems Biology University of Turin Italy (1)
Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy (1)
Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia (1)
Department of Physiology, School of Medicine, Wayne State University (1)
Division of Molecular Hematology, Department of Laboratory Medicine, Lund Univsersity, Sweden (1)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (1)
Eppley Institute for Research in Cancer and Allied Diseases, Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center (1)
Functional Proteomics, ICR (1)
Head of Proteomics at MRC Laboratory of Medical Sciences (1)
IGMM, University of Edinburgh (1)
Institute of Molecular Biology (IMB), Mainz, Germany (1)
King's College London Centre for Inflammation Biology & Cancer Immunology School of Immunology & Microbial Sciences 1st Floor New Hunt's House, Guy's Campus London, UK SE1 1UL (1)
Marine Chemistry Geochemistry, Woods Hole Oceanographic Institution, US (1)
Marine Chemistry and Geochemistry Woods Hole Oceanographic Institute (1)

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Impact of Drying Processes on the Nutritional Composition, Volatile Profile, Phytochemical Content and Bioactivity of Salicornia ramosissima J. Woods.

Not available

S-EPMC8389250 | biostudies-literature

The protein that binds to DNA base J in trypanosomatids has features of a thymidine hydroxylase.

Not available

S-EPMC1874643 | biostudies-literature

Identification of regulators of polyploidization presents therapeutic targetsfor treatment of AMKL

Wen Q, Goldenson B, Silver SJ, Schenone M, Dancik V, Huang Z, Wang LZ, Lewis TA, An WF, Li X, Bray MA, Thiollier C, Diebold L, Gilles L, Vokes MS, Moore CB, Bliss-Moreau M, Verplank L, Tolliday NJ, Mishra R, Vemula S, Shi J, Wei L, Kapur R, Lopez CK, Gerby B, Ballerini P, Pflumio F, Gilliland DG, Go...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2014-01-27 | MSV000078536 | MassIVE

Complete Genome Sequence of Curtobacterium sp. Strain MR_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts.

Not available

S-EPMC4698388 | biostudies-literature

Optogenetic manipulation of BMP signalling to drive chondrogenic differentiation of hPSCs

Optogenetics is a rapidly advancing technology that combines photochemical, optical and synthetic biology techniques to control cellular behaviour and physiology. Combining sensitive light responsive optogenetic intervention tools with human pluripotent stem cell differentiation models has the poten...

ORGANISM(S): Homo sapiens

2023-11-09 | E-MTAB-13377 | biostudies-arrayexpress

Targeted metabolomics data from two freshwater strains of SAR11

In an abundant aquatic groups of microorganisms, SAR11, the transition between salt- and freshwater environments has happened only once: all freshwater SAR11 belong to subclade IIIb/LD12, which has also been found to inhabit coastal environments where salinity varies widely. The first reported isola...

2023-05-09 | MTBLS6991 | MetaboLights

Pacific Ocean metaproteomics, METZYME KM1128

Global metaproteomic analyses of microbial biomass from the upper water column of the Central Pacific Ocean. This dataset was used as a discovery dataset to identify peptide biomarkers for cyanobacterial populations for use in targeted metaproteomic calibrated multiple reaction monitoring (MRM) anal...

ORGANISM(S): environmental samples

2019-02-12 | PXD009712 | Pride

Metaproteomics proteomics oceanography oceanic proteome