Worth A A - OmicsDI

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Unknown (6086)
Genomics (245)
Transcriptomics (88)
Proteomics (60)
Clinical (8)
Models (5)
Metabolomics (4)
Other (3)
Genomic (1)
Methylation profiling (1)

Organisms

Homo sapiens (152)
Mus musculus (33)
Rattus norvegicus (11)
Gallus gallus (5)
Apis mellifera (4)
Canis lupus familiaris (4)
Bos taurus (4)
Drosophila melanogaster (4)
Arabidopsis thaliana (4)
Saccharomyces cerevisiae (2)
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Acyrthosiphon pisum (1)
Fusobacterium nucleatum (1)
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Bagarius yarrelli (1)
Drosophila ananassae (1)
Drosophila mojavensis (1)
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Glyptothorax macromaculatus (1)
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Oreoglanis setiger (1)
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Sus scrofa (1)
synthetic construct (1)

Organisms

Homo sapiens (38)
Mus musculus (17)
Canis lupus familiaris (4)
Arabidopsis thaliana (4)
Ovis aries (2)
gut metagenome (2)
Gallus gallus (2)
Pseudomonas aeruginosa (2)
Rattus norvegicus (2)
Exiguobacterium aestuarii (1)
Rhodiola crenulata (1)
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Echinochloa crus-galli (1)
Halomonas halophila (1)
Acanthogobius flavimanus (1)
Staphylococcus aureus RF122 (1)
Spinibarbus caldwelli (1)
Solenopsis invicta (1)
Gasterosteus aculeatus (1)
Bacillus cereus (1)
biofilm metagenome (1)
Streptococcus thermophilus (1)
uncultured marine microorganism (1)
unidentified (1)
human metagenome (1)
annelid metagenome (1)
biofilter metagenome (1)
hot springs metagenome (1)
rhizosphere metagenome (1)
Sus scrofa (1)

Repository

ENA (159)
EGA (73)
pride (55)
biostudies-arrayexpress (53)
geo (52)
BioModels (5)
MetaboLights (4)
MassIVE (3)
iProX (2)
dbGaP (1)

Tissue

Retina (5)
Cell culture (4)
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T cell (3)
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Disease

Lymphoma (3)
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Disease free (3)
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Leukemia (1)
Prostate cancer (1)
Myeloid neoplasm (1)
Dukes D primary colon cancer (1)
Colon cancer metastasis (1)
Benign adenoma (1)
Adenoma (1)
Colonic Neoplasms (1)
Colorectal cancer (1)
Malignant neoplasm of colon (1)
Neoplasms (1)
Abnormal breast morphology (1)
Atherosclerosis (1)
Brain cancer (1)
Colon cancer (1)
Intermediate uveitis (1)
Melanoma (1)
Pancreatic cancer (1)
Parkinson's disease (1)
Primary bacterial infectious disease (1)
Renal clear cell carcinoma (1)
Uveal melanoma (1)

Technology Type

Mass Spectrometry (55)
Shotgun proteomics (32)
Bottom-up proteomics (14)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (6)
Mass spectrometry (3)
Gel-based experiment (3)
SWATH MS (3)
Data-independent acquisition (2)
SRM/MRM (2)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
Mass spectrometry assay (1)

Instrument Platform

HiSeq X Ten (2)
Q Exactive (2)
Algaemist airlift-loop photobioreactors, volume=0.38L (1)
IScan Illumina (1)
HiSeq X Five (1)
Nanodrop (1)
Illumina HiSeq X (1)
DNBSEQ-G400 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)

Publication Date

2021 (22)
2026 (17)
2022 (15)
2025 (14)
2023 (14)
2024 (12)
2015 (11)
2011 (10)
2016 (8)
2014 (7)
2005 (7)
2019 (6)
2020 (5)
2018 (4)
2013 (4)
2012 (4)
2010 (4)
2017 (4)
2008 (2)
2004 (2)
2007 (1)

CHEBI ID

CHEBI:16240 (1)
CHEBI:16474 (1)
CHEBI:16504 (1)
CHEBI:16856 (1)
CHEBI:17242 (1)
CHEBI:18009 (1)
CHEBI:22651 (1)
CHEBI:29356 (1)
CHEBI:63248 (1)
CHEBI:133028 (1)
CHEBI:133065 (1)
CHEBI:133139 (1)
CHEBI:133141 (1)
CHEBI:133144 (1)
CHEBI:133515 (1)
CHEBI:133622 (1)
CHEBI:133649 (1)
CHEBI:133672 (1)
CHEBI:135063 (1)
CHEBI:13711 (1)
CHEBI:14321 (1)
CHEBI:143243 (1)
CHEBI:15354 (1)
CHEBI:15356 (1)
CHEBI:15422 (1)
CHEBI:15428 (1)
CHEBI:15698 (1)
CHEBI:15727 (1)
CHEBI:15846 (1)
CHEBI:16010 (1)

Metabolite Name

AMP (2)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparagine (1)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparaginyl-D-asparagine (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5,7-dihydroxyoctadeca-8,10,12-trienoic acid (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienoic acid (1)
(R)-3-hydroxybutyrylcarnitine (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPI (20:4) (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1) (1)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (1)
1-palmitoyl-GPE (16:0) (1)
1-stearoyl-2-docosahexaenoyl-GPE (18:0/22:6) (1)
1-stearoyl-2-oleoyl-GPE (18:0/18:1) (1)
2'-deoxycytidine (1)
2'-deoxyuridine (1)
2,2',2''-((2R,5R,8S,11R)-11-((2R,4S,5E,7E,9E)-2,4-dihydroxypentadeca-5,7,9-trien-1-yl)-3,6,9,13,17-pentaoxo-1,4,7,10,14-pentaazacycloheptadecane-2,5,8-triyl)triacetamide (1)
2-aminooctanoate (1)
2-hydroxyglutarate (1)
2-palmitoleoyl-GPC (16:1) (1)
2-stearoyl-GPE (18:0) (1)
3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoic acid (1)
3-phosphoglycerate (1)

First Public Date

2024 (25)
2023 (22)
2026 (19)
2021 (14)
2025 (13)
2022 (13)
2014 (13)
2020 (12)
2016 (6)
2015 (6)
2017 (5)
2018 (4)
2013 (4)
2019 (3)

Modelling Approach

Ordinary differential equation model (3)
Constraint-based model (1)
Other (1)

Study status

Not provided (3)
Not yet recruiting (2)
Recruiting (2)
Completed (1)

Lab affiliation

Department of Pharmacology & Neuroscience UNT Health Science Center Fort Worth, TX, USA (2)
Oregon Hearing Research Center Oregon Health & Science University Portland OR 97239 (2)
School of Pharmacy, University of Wisconsin-Madison (2)
1 Department of Biological Sciences, College of Arts and Sciences, University of North Texas, Denton, TX 2 Advanced Environmental Research Institute (AERI), University of North Texas, Denton, TX (1)
AG Joachim Kopka Max-Planck-Institut für Molekulare Pflanzenphysiologie Wissenschaftspark Golm Am Mühlenberg 1 14476 Potsdam, Germany (1)
Associate Professor, Department of Biochemistry, Faculty of Medicine & Dentistry, University of Alberta (1)
Bioeconomy Science Institute, AgResearch Ltd., Lincoln 7674, New Zealand. (1)
Byers Eye Institute, Stanford University (1)
Cardiovascular and Metabolic Sciences, Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), 13125 Berlin, Germany (1)
Centre for medicines discovery, University of Oxford (1)
Chemical Biology and Proteomics group, Research department at Biogen (1)
Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen, Egyetem Ter 1, 4032 Hungary (1)
Department of Chemical Physiology and Biochemistry Oregon Health and Science University Portland, OR 97239 USA (1)
Department of Microbiology, The University of Texas Southwestern Medical School, Dallas, Texas, USA. (1)
Department of Molecular Biophysics & Biochemistry, Yale School of Medicine, PO Box 208114, New Haven, CT, 06520 (1)
Department of Molecular Microbiology, B. Rappaport Faculty of Medicine, Technion – I.I.T. and the Rappaport Institute for Research in the Medical Sciences, Haifa 31096, Israel (1)
Department of Molecular Oncology and Immunology, Netherlands Cancer Institute, Amsterdam, The Netherlands Department of Medical Oncology, Netherlands Cancer Institute, Amsterdam, The Netherlands Department of Medical Oncology, Leiden University Medical Center, Leiden, The Netherlands (1)
Department of Ophthalmology, Byers Eye Institute, Stanford University, Palo Alto, CA (1)
Department of Pharmaceutical Sciences, Eugene Applebaum College of Pharmacy and Health Sciences, Wayne State University, 259 Mack Avenue, Detroit, MI 48201, USA (1)
Department of Pharmacology and Neuroscience (1)
Department of Pharmacology and Neuroscience, The University of North Texas Health Science Center, 3500 Camp Bowie Boulevard, Fort Worth, TX 76107, USA (1)
Department of Pharmacology and Neuroscience, University of North Texas Health Science Center, Fort Worth, TX 76107, USA (1)
Department of Veterinary Medicine, University of Milan (1)
Dept of Microbiology University of Alabama at Birmingham (1)
East China Normal University (1)
Environmental Toxicology Graduate Program and Department of Chemistry, University of California, Riverside, California 92521, United States (1)
Huazhong agricultural university (1)
InterPrET Center, Department of Biomedicine, Aarhus University, Aarhus DK-8000, Denmark (1)
Lab Head of Systems Oncology lab at CRUK Manchester Institute (1)
Lab head Systems Oncology group at CRUK Manchester Institute (1)

Keyword

Fluorouracil (2)
Irinotecan (2)
Leucovorin (2)
Bevacizumab (1)
Immune Checkpoint Inhibitors (1)
Levoleucovorin (1)
Oxaliplatin (1)
Pembrolizumab (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

Classification

bacteria (5)
protozoa (1)

Modification

Not available (1)

Study type

Transcription profiling by array (31)
RNA-seq of coding RNA (9)
Interventional (6)
DNA-seq (4)
Other (2)
Observational (2)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (901)
2023 (805)
2021 (697)
2024 (632)
2020 (547)
2025 (541)
2019 (396)
2018 (295)
2017 (247)
2016 (203)
2015 (200)
2014 (145)
2013 (112)
2012 (83)
2011 (81)
2026 (62)
2010 (58)
2009 (35)
2007 (24)
2008 (23)
2005 (17)
2006 (14)
2003 (9)
2004 (4)
2001 (4)
1998 (2)
2002 (1)
2000 (1)

Location

China (4)
Germany (1)
United Kingdom (1)

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Mapping the biosynthetic pathway of a hybrid polyketide-nonribosomal peptide in a metazoan

Polyketide synthase (PKS) and nonribosomal peptide synthetase (NRPS) hybrid systems typically use complex protein-protein interactions to facilitate direct transfer of intermediates between these multimodular megaenzymes. In the canal-associated neurons (CANs) of Caenorhabditis elegans, PKS-1 and NR...

2021-06-22 | MTBLS2313 | MetaboLights

Examining the effects of cigarette smoke on mouse lens through a multi OMIC approach

Here, we report a multi OMIC (transcriptome, proteome, and metabolome) approach to investigate molecular changes in lens fiber cells (FC) of mice exposed to cigarette smoke (CS). Pregnant mice were placed in a whole-body smoke chamber and a few days later pups were born, which were exposed to CS for...

2024-03-24 | MTBLS207 | MetaboLights

A metabolome atlas of mouse brain on the global metabolic signature dynamics following short-term fasting

Calorie restriction (CR) or a fasting regimen is considered one of the most potent non-pharmacological interventions to prevent chronic metabolic disorders, ameliorate autoimmune diseases, and attenuate aging. Despite efforts, the mechanisms by which CR improves health, particularly brain health, ar...

2025-07-31 | MTBLS8006 | MetaboLights

Confirmatory non-invasive and non-destructive differentiation between hemp and cannabis using a hand-held Raman spectrometer.

Not available

S-EPMC9048763 | biostudies-literature

Maternal exposure to SSRIs or SNRIs and the risk of congenital abnormalities in offspring: A systematic review and meta-analysis.

Not available

S-EPMC10686472 | biostudies-literature

Multi-Purpose Data Worth Assessment of a Surface Water-Groundwater and Nitrogen Transport Model.

Not available

S-EPMC12271998 | biostudies-literature

"I'm in the Bluesky Tonight": Insights from a year worth of social data.

Not available