Wu Dong D - OmicsDI

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Unknown (1927)
Proteomics (68)
Transcriptomics (42)
Metabolomics (11)
Genomics (4)

Organisms

Homo sapiens (41)
Aerococcus urinae NBRC 15544 = CCUG 36881 (37)
Andropogon gerardi (37)
Bacteria (37)
Bartonella quintana JK 31 (37)
Canis lupus familiaris (37)
Cnidaria (37)
Ectopseudomonas oleovorans CECT 5344 (37)
Ensifer adhaerens (37)
Halictus scabiosae (37)
Human immunodeficiency virus 1 (37)
Mesocricetus auratus (37)
Miscanthus x giganteus (37)
Mus musculus (37)
Panicum virgatum (37)
Pseudomonas aeruginosa PA103 (37)
Pseudomonas aeruginosa SJTD-1 (37)
Rabies virus Nishigahara RCEH (37)
Rattus norvegicus (37)
Rattus rattus (37)
Rhodococcus jostii RHA1 (37)
Rhodopseudomonas palustris (37)
Mus musculus (22)
Ovis aries (4)
Brassica oleracea (1)
Brucella melitensis (1)
Brassica napus (1)
Oryza sativa Indica Group (1)
Fusarium graminearum PH-1 (1)
Mus (1)

Repository

biostudies-arrayexpress (45)
pride (37)
iProX (26)
MetaboLights (10)
MassIVE (5)
EGA (1)
GNPS (1)

Tissue

Liver (6)
Cell culture (5)
Lymph node (3)
T cell (3)
Blood (2)
Blood cell (2)
Hepatocyte (2)
Abscission zone (1)
Blood platelet (1)
Brain (1)
Cell suspension culture (1)
Colon (1)
Early embryonic cell (1)
Electrically active cell (1)
Embryo (1)
Epithelial cell (1)
Gastric epithelial cell (1)
Heart (1)
Kidney (1)
Leaf (1)
Lung (1)
Plant cell (1)
Retina (1)
Retinal pigment epithelial cell (1)
Stem cell (1)
Whole body (1)

Disease

Liver cancer (2)
Acute leukemia (1)
Cardiovascular system disease (1)
Colon cancer (1)
Diffuse gastric cancer (1)
Disease free (1)
Malaria (1)
Polycystic kidney disease (1)
Porcine reproductive and respiratory syndrome (1)
Retinal degeneration (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (15)
Mass spectrometry (9)
Affinity purification coupled with mass spectrometry proteomics (4)
Bottom-up proteomics (4)
Gel-based experiment (4)
Data-independent acquisition (3)
SWATH MS (3)
Top-down proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Immunopeptidomics (2)
Mass spectrometry assay (1)
DiaPASEF (1)
MSE (1)

Instrument Platform

N/A (6)
Illumina NovaSeq 6000 (6)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (4)
10X Genomics reagent kit (4)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
10X Chromium Nuclei Isolation Kit (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive - hilic (2)
Chromium Next GEM Single Cell Multiome Reagent Bundle (1)
10X Genomics reagents (1)
10X Chromium On-Chip Multiplex (1)
10x Chromium with a target of 5,000 cells. Chromium Single Cell 3’ Library & Gel Bead Kit v2 (1)
NA (1)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion (1)
Q Exactive (1)
Q Exactive HF (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive (1)

Publication Date

2025 (21)
2024 (16)
2014 (12)
2022 (12)
2026 (9)
2021 (7)
2020 (7)
2023 (7)
2016 (5)
2015 (5)
2010 (5)
2013 (4)
2011 (3)
2012 (2)
2009 (2)
2019 (2)
2018 (2)
2008 (1)
2007 (1)
2017 (1)

CHEBI ID

CHEBI:30769 (8)
CHEBI:17724 (6)
CHEBI:17752 (6)
CHEBI:6650 (6)
CHEBI:16704 (6)
CHEBI:32816 (6)
CHEBI:15584 (5)
CHEBI:16040 (5)
CHEBI:22660 (5)
CHEBI:22652 (5)
CHEBI:15676 (5)
CHEBI:17533 (5)
CHEBI:16742 (5)
CHEBI:17562 (5)
CHEBI:17015 (5)
CHEBI:18211 (5)
CHEBI:15891 (5)
CHEBI:21547 (5)
CHEBI:17405 (5)
CHEBI:15318 (5)
CHEBI:30887 (5)
CHEBI:15354 (5)
CHEBI:15603 (5)
CHEBI:15756 (5)
CHEBI:17368 (5)
CHEBI:90333 (4)
CHEBI:28997 (4)
CHEBI:17768 (4)
CHEBI:17626 (4)
CHEBI:33508 (4)

Metabolite Name

4-Pyridoxic acid (5)
Pyroglutamic acid (4)
Methionine sulfoxide (4)
N-Acetylputrescine (4)
Indoleacrylic acid (4)
Creatinine (4)
Dehydroascorbic acid (3)
Geranyl-PP (3)
DUMP (3)
Pyruvic acid (3)
Sarcosine (3)
Inosine (3)
Citrulline (3)
Tyrosine (3)
Adenosine (3)
Glycine (3)
Putrescine (3)
Ethanolamine (3)
Cellobiose (3)
N6-Acetyl-L-lysine (3)
Indoxyl sulfate (3)
DCMP (3)
Xanthurenic acid (3)
Kynurenic acid (3)
Phenyllactic acid (3)
Indole-3-carboxylic acid (3)
Maleic acid (3)
Pyridoxamine (3)
Ascorbic acid (3)
Citraconic acid (3)

Study type

Transcription profiling by array (17)
RNA-seq of coding RNA (14)
Single nucleus RNA sequencing (4)
ChIP-seq (2)
RNA-seq of coding RNA from single cells (2)
Unknown experiment type (1)
Transcription profiling by RT-PCR (1)
Other (1)
ScATAC-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (335)
2022 (251)
2023 (242)
2024 (239)
2021 (194)
2020 (166)
2019 (115)
2018 (80)
2017 (73)
2015 (61)
2016 (49)
2026 (42)
2014 (37)
2013 (26)
2012 (19)
2011 (16)
2010 (10)
2009 (5)
2008 (4)
2007 (3)
2006 (2)
2002 (2)
2005 (1)

Lab affiliation

Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
1.Center for Translational Vision Research, Gavin Herbert Eye Institute, Department of Ophthalmology, University of California-Irvine, Irvine, CA 92697, USA 2.Department of Ophthalmic Research, Cleveland Clinic, Cleveland, OH 44195, USA 3.Department of Physiology & Biophysics, School of Medicine, University of California-Irvine, Irvine, CA 92697, USA (1)
Beijing Key Laboratory for Radiobiology, Beijing Institute of Radiation Medicine, Beijing 100850, P.R. China (1)
Bengbu medical college (1)
Center for Cell Lineage and Development, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, GIBH-HKU Guangdong-Hong Kong Stem Cell and Regenerative Medicine Research Centre, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China. (1)
College of Horticulture, China Agricultural University, Beijing, China (1)
College of Horticulture, Nanjing Agricultural University, China (1)
College of Life Science, Capital Normal University, Beijing 100048, China (1)
Department of Cardiology and Institute of Vascular Medicine, Peking University Third Hospital; NHC Key Laboratory of Cardiovascular Molecular Biology and Regulatory Peptides; Key Laboratory of Molecular Cardiovascular Science, Ministry of Education; Beijing Key Laboratory of Cardiovascular Receptors Research; Haihe Laboratory of Cell Ecosystem. Beijing 100191, China. (1)
Department of Epidemiology and Biostatistics, School of Public Health, Anhui Medical University, 81 Meishan Road, Hefei, Anhui, 230032, PR China (1)
Department of General Surgery, Pancreatic Disease Center, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, (1)
Department of Liver Surgery and Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University; Key Laboratory of Carcinogenesis and Cancer Invasion of Ministry of Education, Key Laboratory of Medical Epigenetics and Metabolism, Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China (1)
Department of Urology, Qilu Hospital of Shandong University, Jinan, China (1)
Drug Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, Victoria 3052, Australia (1)
Fourth Military Medical University (1)
Guangzhou Institute of Pediatrics, Guangzhou Women and Children’s Medical Center, Guangzhou Medical University, Guangzhou, 510623, China (1)
Institute of Computing Technology, CAS (1)
Institute of Plant Protection, Shandong Academy of Agricultural Sciences, P.R.China (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Medical College of Xiamen University (1)
Member Cell and Molecular Biology Department St. Jude Children's Research Hospital Memphis, TN-38105 (1)
National Institute of Biological Sciences, Beijing, Beijing, China. (1)
School of Life Sciences, University of Dundee, Dundee (1)
School of Life Sciences, University of Dundee, Dundee, UK (1)
School of Life Sciences, University of Dundee, Dundee, UK(lab head) (1)
School of Medicine, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. (1)
Soochow University (1)
State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China (1)
Translational Biomedical Proteomics, Institute of Molecular and Cell Biology (IMCB), Singapore (1)

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Characterization and expression of sweetfish (Pleco glossus altivelis) cathepsin D.

Not available

S-EPMC5031676 | biostudies-literature

Gasdermin D pore structure reveals preferential release of mature interleukin-1.

Not available

S-EPMC8588876 | biostudies-literature

New Terpenoids from Potentilla freyniana Bornm. and Their Cytotoxic Activities.

Not available

S-EPMC9227482 | biostudies-literature

An open hardware 3-D printed device for measuring tensile properties of thermoplastic filament polymers at cryogenic temperatures.

Not available

S-EPMC9910578 | biostudies-literature

Vitamin D deficiency as a risk factor for dementia and Alzheimer's disease: an updated meta-analysis.

Not available

S-EPMC6854782 | biostudies-literature

Two new species of Amphinemura (Plecoptera, Nemouridae) from the southern Qinling Mountains of China, based on male, female and larvae.

Not available

S-EPMC6305769 | biostudies-literature

d-Amino Acid Substitution of α-Conotoxin RgIA Identifies its Critical Residues and Improves the Enzymatic Stability.

Not available

S-EPMC6472032 | biostudies-literature

Duck liver TMT - Proteome and microbiota analysis reveals alterations of liver-gut axis under different stocking density of Peking ducks

The aim of this project is to investigate the effect of stocking density on duck liver proteome.

ORGANISM(S): Anas platyrhynchos

2018-11-04 | PXD010952 | Pride

ROS-dependent S-palmitoylation activates cleaved and intact gasdermin D.

Not available

S-EPMC11283288 | biostudies-literature

Myeloid PFKFB3-mediated glycolysis promotes kidney fibrosis

Excessive renal fibrosis is a common pathology in progressive chronic kidney diseases. Inflammatory injury and aberrant repair processes contribute to the development of kidney fibrosis. Myeloid cells, particularly monocytes/macrophages, play a crucial role in kidney fibrosis by releasing their proi...

2024-03-12 | MTBLS8278 | MetaboLights

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2052 Results

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OmicsDI is part of the ELIXIR infrastructure

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