Wu Qingqing Q - OmicsDI

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Proteomics (11)
Transcriptomics (9)
Metabolomics (2)

Organisms

Homo sapiens (6)
Oryza sativa (3)
Archaea (3)
Bacteria (3)
Betaherpesvirinae (3)
Borrelia (3)
Botrytis cinerea (3)
Candida albicans (3)
Clostridium perfringens (3)
Eukaryota (3)
Fungi (3)
Hepatitis B virus (3)
Herpesvirales (3)
Human betaherpesvirus 5 (3)
Influenza C virus (3)
Japanese encephalitis virus group (3)
Miscanthus x giganteus (3)
Mycobacterium tuberculosis (3)
Orthoflavivirus (3)
Panicum virgatum (3)
Rattus (3)
Saccharomyces cerevisiae (3)
Salmonella enterica subsp. enterica (3)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (2)
Campylobacter jejuni (2)
Oryza sativa Japonica Group (1)
Arabidopsis thaliana (1)
Drosophila melanogaster (1)
Mus musculus (1)
Oryctolagus cuniculus (1)

Repository

biostudies-arrayexpress (9)
iProX (8)
pride (3)
MetaboLights (2)

Tissue

Whole body (2)
Cell culture (1)
Lung (1)

Disease

Lung squamous cell carcinoma (1)

Technology Type

Mass Spectrometry (3)
Shotgun proteomics (3)
Mass spectrometry (2)

Instrument Platform

Liquid Chromatography MS - (2)

Publication Date

2013 (4)
2020 (4)
2024 (3)
2010 (2)
2009 (2)
2025 (2)
2021 (2)
2016 (1)
2023 (1)
2019 (1)

CHEBI ID

CHEBI:15539 (2)
CHEBI:57443 (2)
CHEBI:35584 (2)
CHEBI:49537 (2)
CHEBI:28207 (2)
CHEBI:90324 (2)
CHEBI:24267 (2)
CHEBI:88356 (2)
CHEBI:90355 (2)
CHEBI:44510 (2)
CHEBI:17111 (2)
CHEBI:90364 (2)
CHEBI:15842 (2)
CHEBI:17407 (2)
CHEBI:47878 (2)
CHEBI:19569 (2)
CHEBI:17808 (2)
CHEBI:17211 (2)
CHEBI:16938 (2)
CHEBI:42491 (2)
CHEBI:16666 (2)
CHEBI:28013 (2)
CHEBI:15905 (2)
CHEBI:16284 (2)
CHEBI:17969 (2)
CHEBI:17633 (2)
CHEBI:17672 (2)
CHEBI:89575 (2)
CHEBI:20794 (2)
CHEBI:15641 (2)

Metabolite Name

Cysteine sulfinate (2)
5-phosphoribosyl-1-pyrophosphate (2)
2-ketohaxanoic acid (2)
UDP-xylose (2)
N-acetyl-L-aspartylglutamic acid (2)
HMG-CoA (2)
Retinoic acid (2)
Arginosuccinic acid (2)
Adenylosuccinate (2)
Nicotinamide Riboside (2)
N-acetyl spermidine (2)
N-acetyl spermine (2)
Succinyl-CoA (2)
Malonyl-CoA (2)
Acetoacetyl-CoA (2)
Propionyl-CoA (2)
Diiodothyronine (2)
5-methyl-THF (2)
7,8-dihydrofolate (2)
Folate (2)
S-adenosyl-L-homoCysteine (2)
Xanthosine-5-phosphate (XMP) (2)
S-adenosyl-L-methioninamine (2)
Thiamine-phosphate (TMP) (2)
Aminoimidazole carboxamide ribonucleotide (2)
S-methyl-5-thioadenosine (2)
L-arginino-succinate (2)
Deoxyguanosine (2)
D-glucosamine-1-phosphate (2)
D-glucosamine-6-phosphate (2)

Study type

Transcription profiling by array (5)
RNA-seq of non coding RNA (3)
RNA-seq of coding RNA (1)

Release Date

2013 (4)
2010 (2)
2009 (2)
2016 (1)

Lab affiliation

State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (2)
Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark, 5000 Odense, Denmark (1)

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DNA Methylation Mediated by a MicroRNA Pathway

In plants, the known microRNAs (miRNAs) are produced as ~21 nucleotide (nt) duplexes from their precursors by Dicer like 1 (DCL1). They are incorporated into Argonaute 1 (AGO1) protein to regulate target gene expression primarily through mRNA cleavage. We report here the discovery of a new class of ...

ORGANISM(S): Oryza sativa

2010-03-12 | E-GEOD-20748 | biostudies-arrayexpress

Myeloid PFKFB3-mediated glycolysis promotes kidney fibrosis

Excessive renal fibrosis is a common pathology in progressive chronic kidney diseases. Inflammatory injury and aberrant repair processes contribute to the development of kidney fibrosis. Myeloid cells, particularly monocytes/macrophages, play a crucial role in kidney fibrosis by releasing their proi...

2024-03-12 | MTBLS8278 | MetaboLights

Expression data from shoots of rice seedlings after inoculation by Sinorhizobium meliloti 1021

Comparative transcriptome was profiled of rice seedling shoots in responding to live S. meliloti1021(LS) and dead S. meliloti1021 (DS) inoculation. The shoots with LS and DS were collected at 1, 2, 5 and 8 DAI respectively for microarry analysis. A total of 2413 differentially expressed genes (DEGs)...

ORGANISM(S): Oryza sativa Japonica Group

2016-09-01 | E-GEOD-53535 | biostudies-arrayexpress

Transcriptional profiles of Campylobacter jejuni macrolide resistant strain JL272 to 4mg/L erythromycin treatment

Erythromycin is the drug of choice to treat campylobacteriosis, but resistance to this antibiotic is rising. The adaptive mechanisms employed by Campylobacter jejuni to erythromycin treatment remain unknown. The aim of this study is to determine the molecular basis underlying CampylobacterM-bM-^@M-^...

ORGANISM(S): Campylobacter jejuni

2013-10-10 | E-GEOD-43025 | biostudies-arrayexpress

Transcriptional profiles of Campylobacter jejuni NCTC 11168 to 4mg/L erythromycin treatment

ORGANISM(S): Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

2013-10-10 | E-GEOD-43023 | biostudies-arrayexpress

Transcriptional profiles of Campylobacter jejuni NCTC 11168 to 0.125mg/L erythromycin treatment

ORGANISM(S): Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

2013-10-10 | E-GEOD-43024 | biostudies-arrayexpress

Transcriptional profiles of Campylobacter jejuni NCTC 11168 and JL272 to erythromycin treatment

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Campylobacter jejuni

2013-10-10 | E-GEOD-43026 | biostudies-arrayexpress

PFKFB3-mediated glycolysis boosts fibroblast activation and subsequent kidney fibrosis

Renal fibrosis, a hallmark of chronic kidney diseases, is driven by the activation of renal fibroblasts. Recent studies have highlighted the role of glycolysis in this process. Nevertheless, one critical glycolytic activator, 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 (PFKFB3), remain...

2024-03-12 | MTBLS8281 | MetaboLights

Human,squamous cell lung cancer,LC-MS/MS

We compared the proteome of primary SqCLC tumor tissue between patients with ER (< 10 months) vs. LR (> 30 months) following surgery. iTRAQ-based quantitative 2D LC-MS/MS proteomics were performed on 20 SqCLC tumor samples (10 ER, 10 LR) using a matched pair design in which each ER tumor sample was ...

ORGANISM(S): Homo sapiens (Human)

2021-09-08 | PXD009383 | Pride

Sequencing of rice degradome

miRNAs can regulate target gene expression by mRNA cleavage. Rice degradome sequencing was employed to validate mRNA targets of rice miRNAs. Two rice samples, 3-week-old seedling and young panicles were included in the study.