Wu W W - OmicsDI

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Unknown (42033)
Transcriptomics (1224)
Proteomics (1021)
Genomics (280)
Metabolomics (88)
Multiomics (5)
Other (3)
Models (2)
Genomic (1)

Organisms

Homo sapiens (859)
Mus musculus (513)
Arabidopsis thaliana (60)
Rattus norvegicus (41)
Saccharomyces cerevisiae (35)
Caenorhabditis elegans (26)
Drosophila melanogaster (24)
Oryza sativa (21)
Danio rerio (20)
Zea mays (15)
Gallus gallus (11)
Oryza sativa Japonica Group (9)
Pseudomonas aeruginosa (7)
Sus scrofa (7)
Campylobacter jejuni (6)
Escherichia coli (6)
Chlamydomonas reinhardtii (5)
Triticum aestivum (5)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Vibrio cholerae (3)
Glycine max (3)
Ovis aries (3)
activated sludge metagenome (2)
Nitrosomonas europaea ATCC 19718 (2)
Acropora millepora (2)
Methanobrevibacter smithii ATCC 35061 (2)
Gossypium hirsutum (2)
Zea mays subsp. mays (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu (2)
Macaca mulatta (2)

Organisms

Bahaba taipingensis (5)
Rattus norvegicus (1)
Mus musculus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (1368)
pride (639)
iProX (261)
EGA (133)
MetaboLights (82)
PeptideAtlas (68)
MassIVE (44)
ENA (8)
GNPS (6)
GPMDB (3)
jPOST (3)
PanoramaPublic (3)
BioModels (2)
geo (2)
dbGaP (1)

Tissue

Cell culture (171)
Epithelial cell (47)
Liver (44)
Liver (32)
Brain (29)
Leaf (28)
Permanent cell line cell (22)
Stem cell (22)
Kidney (21)
Plant cell (19)
Cell suspension culture (17)
Testis (16)
Whole body (16)
Blood plasma (14)
Hepatocyte (13)
Blood cell (11)
Root (11)
B cell (10)
Colon (10)
Heart (10)
Blood serum (9)
HeLa cell (9)
Lung (9)
Macrophage (9)
Embryonic stem cell (8)
Fibroblast (8)
Bone marrow (7)
Others (6)
Male Reproductive System (2)
Plasma Non-glyco (2)

Disease

Disease free (24)
Breast cancer (15)
Colon cancer (14)
Cervix carcinoma (8)
Acute leukemia (6)
Malignant neoplasm of ovary (6)
Prostate adenocarcinoma (6)
Alzheimer's disease (5)
Brain cancer (5)
Wounds and Injuries (5)
Brain glioblastoma multiforme (4)
Glioblastoma (4)
Not Available (3)
Hepatocellular carcinoma (3)
Severe acute respiratory syndrome (3)
Acute myeloid leukemia (2)
Normal (2)
Acute kidney tubular necrosis (2)
COVID-19 (2)
Cardiovascular system disease (2)
Astrocytoma (1)
Metastatic colorectal cancer (1)
Endometrioid carcinoma (1)
Myelogenous leukaemia (1)
None (1)
Schizophrenia (1)
Progressive skeletal muscle myopathy (1)
Bladder cancer (1)
Limited scleroderma (1)
Tumor (1)

Technology Type

Mass Spectrometry (639)
Shotgun proteomics (311)
Bottom-up proteomics (86)
Mass spectrometry (67)
Affinity purification coupled with mass spectrometry proteomics (66)
Data-dependent acquisition (61)
Gel-based experiment (51)
SWATH MS (36)
Data-independent acquisition (33)
Top-down proteomics (24)
Chemical cross-linking coupled with mass spectrometry proteomics (13)
Proteogenomics (12)
SRM/MRM (12)
NMR spectroscopy (9)
Mass spectrometry assay (7)
Affinity proteomics (6)
Immunopeptidomics (6)
Illumina HiSeq 2000 (5)
All-ion fragmentation (5)
Mass spectrometry imaging (4)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, Illumina_2.5M (2)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2000, unknown (1)
Illumina 2.5M, Illumina HiSeq 2000 (1)
Affymetrix_U133v2, Illumina HiSeq 2000 (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HiSeq 2500 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)

Instrument Platform

Illumina HiSeq 2000 (30)
Illumina NovaSeq 6000 (29)
Illumina HiSeq 2500 (15)
Illumina HiSeq 4000 (11)
NextSeq 500 (8)
Illumina Genome Analyzer IIx (4)
Illumina Genome Analyzer (3)
418 [Affymetrix] (3)
GenePix 4000B [Axon Instruments] (3)
N/A (3)
HiSeq X Ten (3)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (2)
10X Chromium Nuclei Isolation Kit (2)
10X Genomics reagent kit (2)
Illumina Genome Analyzer II (2)
NextSeq 2000 (2)
KAPA RNA HyperPrep Kit (1)
10X Chromium On-Chip Multiplex (1)
10x Chromium with a target of 5,000 cells. Chromium Single Cell 3’ Library & Gel Bead Kit v2 (1)
Helicos (1)
NEB Next Ultra RNA Library Prep Kit for Illumina (1)
RNeasy kit (1)
Cell scraper (1)
Illumina Hiseq 2000 (1)
GeneChip Scanner 3000 [Affymetrix] (1)
ScanArray Express HT [PerkinElmer] (1)
Affymetrix Fluidics Station 400 (1)
Illumina NovaSeq X (1)
Ion Torrent PGM (1)
RNeasy Mini Kit (1)

Publication Date

2014 (221)
2013 (213)
2015 (178)
2025 (166)
2024 (160)
2011 (159)
2023 (156)
2012 (156)
2022 (144)
2021 (139)
2010 (129)
2016 (119)
2026 (105)
2020 (87)
2019 (82)
2009 (48)
2008 (48)
2018 (41)
2017 (24)
2007 (21)
2006 (10)
2005 (5)
2004 (4)
2003 (2)
2002 (1)
2001 (1)

UNIPROT ID/AC

P31327 (43)
B4E3A4 (39)
P60709 (39)
P63261 (39)
P25705 (38)
A5A3E0 (37)
P06576 (37)
Q9BYX7 (35)
P04264 (34)
P68032 (34)
P68133 (34)
I3L4N8 (33)
P00367 (33)
P07477 (33)
P62736 (33)
P63267 (33)
P69891 (33)
P69892 (33)
P35908 (32)
P68363 (32)
Q13707 (32)
Q9BQE3 (32)
P02792 (31)
P05787 (31)
P0CG38 (31)
P13645 (31)
P49448 (31)
Q562R1 (31)
Q7Z794 (31)
P0CG39 (30)

ENSEMBL ID

ENSG00000170477 (9)
ENSG00000247315 (5)
ENSG00000147251 (4)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:16919 (31)
CHEBI:16704 (29)
CHEBI:17368 (29)
CHEBI:30769 (29)
CHEBI:16040 (28)
CHEBI:15354 (28)
CHEBI:17895 (28)
CHEBI:16737 (27)
CHEBI:17750 (26)
CHEBI:17295 (26)
CHEBI:17351 (26)
CHEBI:15891 (25)
CHEBI:17596 (25)
CHEBI:16828 (25)
CHEBI:17568 (24)
CHEBI:15741 (24)
CHEBI:7916 (24)
CHEBI:17203 (24)
CHEBI:16015 (24)
CHEBI:30915 (24)
CHEBI:17154 (24)
CHEBI:16335 (24)
CHEBI:16643 (24)
CHEBI:15971 (23)
CHEBI:18050 (23)
CHEBI:16467 (23)
CHEBI:16750 (23)
CHEBI:15428 (23)
CHEBI:16347 (23)
CHEBI:15756 (23)

Metabolite Name

Choline (20)
Hypoxanthine (20)
Cytosine (19)
Adenosine (18)
Creatinine (18)
L-Phenylalanine (18)
Betaine (16)
L-Arginine (16)
Adenine (16)
Creatine (16)
Uridine (15)
L-Tyrosine (15)
Uracil (14)
L-Proline (14)
L-Tryptophan (14)
L-Glutamine (14)
Guanosine (14)
L-Carnitine (14)
L-Histidine (13)
Cytidine (13)
Glycerophosphocholine (13)
L-Leucine (13)
Xanthine (12)
L-Valine (12)
L-Methionine (12)
Inosine (12)
Glycine (11)
Valine (11)
Thymine (11)
Phytosphingosine (11)

First Public Date

2026 (5)
2014 (3)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Bioplatforms Australia (7)
Zhejiang University (5)
Peking University (4)
Rochester Institute of Technology (4)
Shanghai Jiao Tong University (4)
BGI Research (3)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Department of Pharmaceutical Sciences, University of Illinois College of Pharmacy,Chicago,IL,USA Richard and Loan Hill Department of Biomedical Engineering, University of Illinois College of Engineering,Chicago, IL,USA University of Illinois Cancer Center,Chicago, IL,USA (3)
Northwest University (3)
Shenzhen Center for Disease Control and Prevention (3)
St Jude Children's Research Hospital (3)
State Key Laboratory of Genetic Engineering, Department of Biochemistry and Biophysics, School of Life Sciences, Fudan University, Shanghai 200438, China (3)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
Sun Yat-sen University (3)
University of Science and Technology of China (3)
Wenzhou Medical University (3)
wuhan union hospital (3)
1. Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, Immunos, Singapore 138648, Republic of Singapore 2. Department of Pharmacy, National University of Singapore 3. Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, the Netherlands (2)
Beijing Friendship Hospital, Capital Medical University (2)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
College of Agronomy, Jiangxi Agricultural University (2)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 E joern.dengjel@unifr.ch (2)
Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (2)
Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST) (2)
Department of Stomatology, Nanfang Hospital, Southern Medical University, Guangzhou, China, 510515 (2)
Department of Urology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China (2)
Director, Translational Proteomics Research Unit, IRCM Director, Biomarker Pipeline for Precision Medicine Strategic Initiative Full IRCM Research Professor Full Research Professor, Department of Biochemistry and Molecular Medicine (accreditation for the Molecular Biology Programs), Université de Montréal Holder of the Bell-Bombardier Chair of Excellence Person in charge of responsible conduct of research, IRCM (2)
ETH Zurich (2)
Energy Metabolism Laboratory, Institute of Translational Medicine, Department of Health Sciences and Technology, Swiss Federal Institute of Technology (ETH) Zurich, Schwerzenbach, CH-8603, Switzerland (2)
Harbin Medical University (2)

IsPrivate

False (2)

Submitter Keywords

TransQST (1)
COVID-19 (1)

Modification

Not available (3)
15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
71.037114 (1)

Study type

Transcription profiling by array (755)
RNA-seq of coding RNA (243)
ChIP-seq (109)
Comparative genomic hybridization by array (37)
Methylation profiling by array (35)
RNA-seq of non coding RNA (32)
Methylation profiling by high throughput sequencing (29)
Other (23)
RNA-seq of coding RNA from single cells (19)
ChIP-chip by tiling array (16)
Unknown experiment type (9)
Transcription profiling by RT-PCR (6)
Transcription profiling by tiling array (5)
MicroRNA profiling by array (4)
RNA-seq of total RNA (4)
Transcription profiling by SAGE (3)
ChIP-chip by array (3)
RIP-seq (3)
Human - Single-cell sequencing (2)
Animal - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
Genotyping by array (2)
ATAC-seq (2)
Single nucleus RNA sequencing (2)
Proteomic profiling by array (2)
Transcription profiling by high throughput sequencing (1)
Cell line - Single-cell sequencing (1)
RNA-seq of non coding RNA from single cells (1)
Animal - Single-cell sequencing (1)
Human - High-throughput sequencing (1)

Release Date

2025 (6720)
2022 (5824)
2023 (5250)
2024 (5096)
2021 (4398)
2020 (3174)
2019 (2318)
2018 (1914)
2017 (1647)
2016 (1419)
2015 (1284)
2014 (994)
2026 (893)
2013 (719)
2012 (524)
2011 (421)
2010 (299)
2009 (187)
2008 (132)
2007 (73)
2006 (42)
2005 (29)
2004 (13)
2003 (10)
2002 (7)
2001 (4)
2000 (4)
1999 (4)
1998 (1)
1994 (1)

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HERV-W ENV Induces Innate Immune Activation and Neuronal Apoptosis via linc01930/cGAS Axis in Recent-Onset Schizophrenia.

Not available

S-EPMC9917391 | biostudies-literature

HERV-W Envelope Triggers Abnormal Dopaminergic Neuron Process through DRD2/PP2A/AKT1/GSK3 for Schizophrenia Risk.

Not available

S-EPMC8777930 | biostudies-literature

Patterns of dioxin-altered mRNA expression in livers of dioxin-sensitive versus dioxin-resistant rats

The dioxin congener 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) causes a wide range of toxic effects in rodent species, all of which are mediated by a ligand-dependent transcription-factor, the aryl hydrocarbon receptor (AHR). The Han/Wistar (Kuopio) (H/W) strain shows exceptional resistance to many ...

ORGANISM(S): Rattus norvegicus

2011-11-14 | E-GEOD-13513 | biostudies-arrayexpress

RNATOPS-W: a web server for RNA structure searches of genomes.

Not available

S-EPMC2720711 | biostudies-literature

Identification of inflammatory subgroups of schizophrenia and bipolar disorder patients with HERV-W ENV antigenemia by unsupervised cluster analysis.

Not available

S-EPMC8260666 | biostudies-literature

Aurora B promotes the CENP-T-CENP-W interaction to guide accurate chromosome segregation in mitosis.

Not available

S-EPMC11337009 | biostudies-literature

W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data.

Not available

S-EPMC3031039 | biostudies-literature

Asthma II

Bronchial Epithelial Cells were isolated processed as described (Chu et al., 2002 and Zhao et al., 2011). The objective of the study was to identify differentially expressed genes between normal control (NC), mild-moderate asmathic (notSA) and severe asthmatic (SA) patients. For demographics data,...

ORGANISM(S): Homo sapiens

2014-11-14 | E-GEOD-63142 | biostudies-arrayexpress

High Temperature-Resistant Transparent Conductive Films for Photoelectrochemical Devices Based on W/Ag Composite Nanonetworks.

Not available

S-EPMC9960394 | biostudies-literature

Effects of zirconium element on the microstructure and deuterium retention of W-Zr/Sc2O3 composites.

Not available

S-EPMC5011696 | biostudies-literature

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