Wu Yang Y - OmicsDI

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Unknown (19931)
Proteomics (364)
Transcriptomics (106)
Metabolomics (43)
Genomics (33)
Multiomics (3)
Other (1)

Organisms

Homo sapiens (168)
Mus musculus (78)
Rattus norvegicus (11)
Oryza sativa (5)
Arabidopsis thaliana (5)
Pseudomonas aeruginosa (5)
Zea mays (5)
Drosophila melanogaster (4)
Bos taurus (3)
Ovis aries (2)
Bos grunniens (2)
Pteropus alecto (1)
Haloferax mediterranei (1)
Taenia multiceps (1)
Brassica oleracea (1)
Shewanella oneidensis MR-1 (1)
Solanum habrochaites (1)
Bemisia tabaci (1)
Dirofilaria immitis (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu (1)
Volvox carteri (1)
Macaca mulatta (1)
Neurospora crassa (1)
Drosophila simulans (1)
Staphylococcus epidermidis (1)
Oryza sativa Indica Group (1)
Clostridium acetobutylicum (1)
Vibrio cholerae (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)

Organisms

Mus musculus (1)
Homo sapiens (1)

Repository

iProX (175)
pride (165)
biostudies-arrayexpress (119)
MetaboLights (43)
EGA (17)
PeptideAtlas (16)
MassIVE (8)
geo (2)
ENA (2)
GPMDB (1)

Tissue

Cell culture (42)
Brain (13)
Plasma Non-glyco (11)
Epithelial cell (11)
Liver (10)
Blood plasma (7)
Hepatocyte (7)
Testis (5)
Blood serum (4)
Heart (4)
Stem cell (4)
Whole body (4)
Others (3)
Cell suspension culture (3)
Colon (3)
Embryo (3)
Kidney (3)
Lung (3)
Macrophage (3)
Oocyte (3)
Permanent cell line cell (3)
Primary cell (3)
Male Reproductive System (2)
Blood (2)
Blood cell (2)
Cell line cell (2)
Keratinocyte (2)
Neutrophil (2)
Pancreas (2)
Saliva (2)

Disease

Disease free (11)
Breast cancer (4)
Cardiovascular system disease (3)
Colon cancer (3)
Hepatocellular carcinoma (3)
Alzheimer's disease (2)
Brain glioblastoma multiforme (2)
Disease (2)
Influenza (2)
Not Available (1)
Acute leukemia (1)
Adult hepatocellular carcinoma (1)
Aortic dissection (1)
Bladder neck obstruction (1)
Cataract (1)
Cholangiocarcinoma (1)
Chronic obstructive pulmonary disease (1)
Endometrial Endometrioid Adenocarcinoma (1)
Gastric adenocarcinoma (1)
Head and neck squamous cell carcinoma (1)
Kidney cancer (1)
Liver cancer (1)
Liver cirrhosis (1)
Liver inflammation (1)
Lupus nephritis (1)
Male infertility (1)
Melanoma (1)
Non-alcoholic steatohepatitis (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (165)
Shotgun proteomics (82)
Mass spectrometry (39)
Data-dependent acquisition (21)
Bottom-up proteomics (20)
Gel-based experiment (15)
Affinity purification coupled with mass spectrometry proteomics (13)
Top-down proteomics (6)
Data-independent acquisition (5)
Proteogenomics (5)
SWATH MS (3)
Illumina HiSeq 2000, ILLUMINA (2)
NMR spectroscopy (2)
Mass spectrometry assay (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Immunopeptidomics (2)
SRM/MRM (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry imaging (1)
Olink affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (20)
Liquid Chromatography MS - negative - reverse phase (18)
LTQ Orbitrap Velos (15)
Liquid Chromatography MS - positive - hilic (6)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - (3)
Liquid Chromatography MS - alternating - hilic (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Illumina HiSeq 2000 (2)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Instrument (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Eclipse (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion ETD (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
GC色Agilent 7890A, Agilent ,LECOChroma TOF PEGASUS HT, LECO (1)
Agilent 7890 (1)
Xevo TQ MS (Waters) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Bruker (1)

Publication Date

2025 (53)
2022 (51)
2024 (41)
2023 (40)
2021 (35)
2015 (34)
2013 (33)
2014 (25)
2020 (22)
2026 (20)
2019 (20)
2017 (12)
2012 (11)
2011 (11)
2018 (9)
2010 (8)
2016 (7)
2009 (4)
2006 (4)
2008 (2)

UNIPROT ID/AC

A0A024RC46 (16)
A5A3E0 (16)
A6NNZ2 (16)
B3KML9 (16)
B4DHB3 (16)
B4DL86 (16)
B4DRV9 (16)
B4DY08 (16)
B4E3A4 (16)
C9JM50 (16)
E7EX29 (16)
G8JLB6 (16)
H0YM50 (16)
H7BZ94 (16)
I3L4N8 (16)
J3KPS3 (16)
J3QRK5 (16)
M0QZ52 (16)
O00299 (16)
O14556 (16)
O14818 (16)
O60812 (16)
O75369 (16)
O75369-8 (16)
O75694 (16)
O76013 (16)
O76015 (16)
O95678 (16)
P00338 (16)
P00338-3 (16)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000147251 (8)
ENSG00000247315 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17368 (23)
CHEBI:16704 (20)
CHEBI:17154 (19)
CHEBI:16335 (19)
CHEBI:15354 (19)
CHEBI:17351 (19)
CHEBI:16708 (18)
CHEBI:16750 (18)
CHEBI:7916 (18)
CHEBI:17750 (18)
CHEBI:16919 (18)
CHEBI:17596 (18)
CHEBI:17509 (17)
CHEBI:15891 (17)
CHEBI:16737 (17)
CHEBI:15428 (16)
CHEBI:30769 (16)
CHEBI:16040 (15)
CHEBI:17562 (15)
CHEBI:17015 (15)
CHEBI:17568 (15)
CHEBI:18183 (15)
CHEBI:17405 (15)
CHEBI:18344 (15)
CHEBI:17748 (14)
CHEBI:28875 (14)
CHEBI:15741 (14)
CHEBI:16196 (14)
CHEBI:16235 (14)
CHEBI:32816 (14)

Metabolite Name

Hypoxanthine (16)
Adenosine (14)
Creatinine (12)
Betaine (11)
Choline (11)
Adenine (11)
Cholic acid (10)
Guanosine (10)
Valine (9)
4-Pyridoxic acid (9)
L-Arginine (9)
Taurine (9)
Linoleic acid (9)
Cytidine (9)
L-Carnitine (9)
Inosine (9)
Leucine (8)
Glycine (8)
Uracil (8)
Cytosine (8)
Riboflavin (8)
Isoleucine (8)
Thymidine (8)
Creatine (8)
Glycerophosphocholine (8)
Kynurenic acid (7)
Phytosphingosine (7)
Methionine (7)
N-Acetylputrescine (7)
Oleic acid (7)

First Public Date

2022 (1)
2014 (1)

Modification

15.994915 (1)
57.021464 (1)
71.037114 (1)

Study type

Transcription profiling by array (47)
RNA-seq of coding RNA (41)
ChIP-seq (10)
RNA-seq of non coding RNA (7)
Other (5)
Methylation profiling by high throughput sequencing (4)
Transcription profiling by RT-PCR (2)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)

Release Date

2025 (3341)
2022 (2827)
2023 (2722)
2024 (2603)
2021 (2103)
2020 (1482)
2019 (1035)
2018 (850)
2017 (668)
2016 (540)
2026 (480)
2015 (461)
2014 (314)
2013 (222)
2012 (127)
2011 (91)
2010 (63)
2009 (43)
2008 (35)
2006 (14)
2007 (12)
2005 (8)
2004 (3)
2003 (2)
2001 (2)
2002 (1)
1994 (1)

Lab affiliation

Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
Department of Clinical Laboratory, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (3)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
wuhan union hospital (3)
Army Medical University (Third Military Medical University) (2)
Department of Cardiology, Jiangbin Hospital of Guangxi Zhuang Autonomous Region, No. 85 Hedi Road, Nanning, Guangxi, 530021, China (2)
Department of Radiation and Medical Oncology, Zhongnan Hospital of Wuhan University (2)
Department of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Institute of Immunology and Department of Orthopaedics of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Nanjing Medical University (2)
Sencond Military Medical University (2)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (2)
Sun Yat-sen University (2)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1. Research Institute of Resource Insects, Chinese Academy of Forestry (1)
Academy of Orthopedics, Guangdong Province, Guangdong Provincial Key Laboratory of Bone and Joint Degeneration Diseases, The Third Affiliated Hospital of Southern Medical University, Guangzhou, Guangdong, China (1)
BGI-Shenzhen,China (1)
BGI-shenzhen (1)
Beijing Friendship Hospital, Capital Medical University (1)
Beijing Proteome Research Center (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Cancer Center of Union Hospital, Tongji Medical College,Huazhong University of Science and Technology (1)
Cancer Stem Cell and Translation Medicine Lab, Innovative Cancer Drug Research and Development Engineering Center of Liaoning Province, Department of Oncology, Shengjing Hospital of China Medical University, Shenyang, 110004, China (1)
Center for Single-Cell Omics, School of Public Health, Shanghai Jiao Tong University School of Medicine (1)
Center for Single-Cell Omics, School of Public Health, Shanghai Jiao Tong University Schoole of Medicine (1)
Children's Hospital of Soochow University, Suzhou (1)
Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, Zhejiang 310052, China (1)
China National GenBank,BGI-Shenzhen,Shenzhen 518120,China (1)
Chinese Academy of Sciences (1)

Tags

xref:PubMed:22561152 (1)

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Bu Yang Huan Wu Decoction controls synovitis via HIF-1/VEGF signaling for osteoarthritis therapy.

Not available

S-EPMC12582717 | biostudies-literature

Gene expression profiles of MCF-7 cells treated with Si-Wu-Tang, estradiol and ferulic acid

Traditional Chinese medicines (TCM), usually composed of a mixture of components, may simultaneously target multiple genes/pathways and thus achieve superior efficacy for complex diseases such as cancer. To identify novel mechanisms of action and potential health benefits for a TCM formula Si-Wu-Tan...

ORGANISM(S): Homo sapiens

2011-05-18 | E-GEOD-23610 | biostudies-arrayexpress

Comparative transcriptomic analysis of normal and abnormal in vitro flowers in Cymbidium nanulum Y. S. Wu et S. C. Chen identifies differentially expressed genes and candidate genes involved in flower formation.

Not available

S-EPMC9638074 | biostudies-literature

Alterations in the gene expression profile in SKOV3 cells exposed to elaiophylin

Elaiophylin was screened and identified as a novel autophagy inhibitor, with significant antitumor efficacy as a single agent. To explore the mechanisms by which elaiophylin kills cancer cells, NimbleGen 12x135K microarrays were used to find the gene expression changes in SKOV3 cells treated with el...

ORGANISM(S): Homo sapiens

2022-06-07 | GSE205529 | GEO

Two new species of the genus Macrothele Ausserer, 1871 (Araneae, Macrothelidae) from China.

Not available

S-EPMC9836591 | biostudies-literature

Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

Subcellular localization of mutated β-catenins with different incidences of cis-peptide bonds at the Xaa246-P247 site in HepG2 cells.

Not available

S-EPMC6497428 | biostudies-literature

Resistance mechanisms of SARS-CoV-2 3CLpro to the non-covalent inhibitor WU-04.

Not available

S-EPMC11003996 | biostudies-literature

Differentially expressed proteins between WT Y. pestis and ΔhmwC

ORGANISM(S): Yersinia Pestis Co92

PXD042928 |

New and noteworthy boletes from subtropical and tropical China.

Not available