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TranscriptomicsThe rsa1-1 mutation affects global gene expression in Arabidopsis thaliana with or without salt stress
Salt stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified a novel calcium-binding protein and used the Affymetrix whole-genome arrays to define downstream targets of this important protein. We used the microarrays to reveal the...
ORGANISM(S): Arabidopsis thaliana 
2013-07-07 | E-GEOD-39236 | biostudies-arrayexpress
TranscriptomicsThe rcf1-1 mutation affects global gene expression in Arabidopsis thaliana with or without cold stress.
Cold stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified an essential regulator of cold-responsive genes and used the Affymetrix whole-genome arrays to define downstream targets of this important protein. We used the microarra...
ORGANISM(S): Arabidopsis thaliana 
2013-02-25 | E-GEOD-39090 | biostudies-arrayexpress
TranscriptomicsGenome-wide identification of mis-spliced/intron-retained transcripts in Arabidopsis thaliana rcf1-1 mutant plants under normal growth conditions as determined by tiling array analysis.
Cold stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified a DEAD box RNA helicase, RCF1 (Regulator of CBF gene expression 1) that controls pre-mRNA splicing of cold-stress-responsive genes including positive and negative regula...
ORGANISM(S): Arabidopsis thaliana 
2013-02-25 | E-GEOD-41377 | biostudies-arrayexpress
TranscriptomicsGenome-wide identification of mis-spliced/intron-retained transcripts in Arabidopsis thaliana rcf1-1 mutant plants under cold stress as determined by tiling array analysis.
Cold stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified a DEAD box RNA helicase, RCF1 (Regulator of CBF gene expression 1) that controls pre-mRNA splicing of cold-stress-responsive genes including positive and negative regula...
ORGANISM(S): Arabidopsis thaliana 
2013-02-25 | E-GEOD-41378 | biostudies-arrayexpress
MetabolomicsComparative analysis of proteomic and metabolomic profiles of different species of Paris

An extract prepared from species of Paris is the most widely consumed herbal product in China. The genus Paris includes a variety of genotypes with different medicinal component contents but only two are defined as official sources. Closely related species have different medicinal properties beca...

2020-01-13 | MTBLS779 | MetaboLights
UnknownThe Class III Peroxidase (POD) Gene Family in Cassava: Identification, Phylogeny, Duplication, and Expression.
Not available
S-EPMC6600411 | biostudies-literature
ProteomicsMetabolic Reprogramming in the Enterocytes of Neonatal Piglets Infected with Porcine Epidemic Diarrhea Virus: Integrated Omics and Multi-Batch Analysis Highlight Alterations in Lipid Metabolism and Potential Therapeutic Targets
Our research team recently investigated the role of PEDV on piglet intestinal metabolism. We conducted several independent animal experiments and collected the samples for transcriptomics and proteomics. Our purpose is to identify and validate prospective targets for both diagnostic and therapeutic ...
ORGANISM(S): Sus Scrofa Sus Scrofa Domesticus 
2026-02-27 | PXD075013 |
ProteomicsProteome sequencing of uterus at different eggshell strenghten and thickness of hens
In this study, we employed proteomics to investigate the differences between the uteruses of laying hens with high- or low-breaking-strength shells.
ORGANISM(S): Gallus Gallus 
2020-09-14 | PXD021449 |
UnknownGenome-Wide Analyses of Calcium Sensors Reveal Their Involvement in Drought Stress Response and Storage Roots Deterioration after Harvest in Cassava.
Not available
S-EPMC5924563 | biostudies-literature
ProteomicsNUT1-Exo70A1 Regulates Xylem Vessel Development and Influences Water Use Efficiency in Maize
The total proteins from transgenic plants overexpressing Exo70A1 coding sequence in a translational fusion of a GFP-tag were extracted from root stele tissues using a lysis buffer composed of 20 mM Tris-HCl pH 7.5, 150 mM NaCl, 0.5 mM EDTA pH 8.0, 0.5% NP-40, and freshly added 1 mM PMSF, 1 mM DTT, 1...
ORGANISM(S): Zea Mays 
2026-01-20 | PXD073273 |
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