Xi Gu G - OmicsDI

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Unknown (81)
Transcriptomics (23)
Genomics (8)
Proteomics (1)
Metabolomics (1)

Organisms

Homo sapiens (21)
Mus musculus (6)
Chlorocebus sabaeus (3)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (31)
MassIVE (1)
MetaboLights (1)

Technology Type

Mass spectrometry (1)

Instrument Platform

NextSeq 500 (3)
Orbitrap Eclipse (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2014 (8)
2022 (5)
2013 (5)
2015 (4)
2010 (4)
2016 (3)
2012 (2)
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2006 (1)

CHEBI ID

CHEBI:10014 (1)
CHEBI:100147 (1)
CHEBI:10016 (1)
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CHEBI:10027 (1)
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CHEBI:10033 (1)
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CHEBI:10214 (1)

Metabolite Name

(+ (1)
(+)-Pinoresinol (1)
(+)-Prosopinine (1)
(-)-Acanthocarpan (1)
(-)-Glyceollin I (1)
(-)-Menthyl O-beta-D-glucoside (1)
(1-Ribosylimidazole)-4-acetate (1)
(10S)-Juvenile hormone III acid diol (1)
(10S)-Juvenile hormone III diol (1)
(15S)-15-Hydroxy-5,8,11-cis-13-trans-eicosatetraenoate (1)
(2'S)-Deoxymyxol 2'-(2,4-di-O-methyl-alpha-L-fucoside) (1)
(2'S)-Deoxymyxol 2'-alpha-L-fucoside (1)
(2S,3S)-2-Hydroxytridecane-1,2,3-tricarboxylate (1)
(3R,2'S)-Myxol 2'-(2,4-di-O-methyl-alpha-L-fucoside) (1)
(3S,2'S)-4-Ketomyxol 2'-alpha-L-fucoside (1)
(3S,4S)-3-Hydroxytetradecane-1,3,4-tricarboxylate (1)
(3Z)-Phycocyanobilin (1)
(3alpha,5beta,11beta,17beta)-9-Fluoro-17-methylandrostane-3,11,17-triol (1)
(5Z,13E)-11alpha-Hydroxy-9,15-dioxoprost-13-enoate (1)
(6R)-10-Formyltetrahydropteroyldiglutamate (1)
(6Z,9Z,12Z)-Octadecatrienoic acid (1)
(9R,10R)-Dihydroxyoctadecanoic acid (1)
(9S,10S)-10-Hydroxy-9-(phosphonooxy)octadecanoate (1)
(9Z)-(13S)-12,13-Epoxyoctadeca-9,11-dienoic acid (1)
(9Z)-(7S,8S)-Dihydroxyoctadecenoic acid (1)
(9Z)-Hexadecenoic acid (1)
(9Z)-Octadecenoic acid (1)
(9Z,11E)-(13S)-13-Hydroperoxyoctadeca-9,11-dienoic acid (1)
(9Z,12Z)-(8R)-Hydroxyoctadeca-9,12-dienoic acid (1)
(Ac)2-L-Lys-D-Ala-D-Ala (1)

Study type

Transcription profiling by array (10)
RNA-seq of coding RNA (8)
ChIP-seq (7)
Ribo-seq (2)
Genotyping by array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

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2015 (10)
2014 (9)
2020 (9)
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2016 (6)
2019 (6)
2013 (5)
2017 (5)
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2012 (3)
2018 (3)
2026 (2)
2011 (2)
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2006 (1)

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Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

A novel missense mutation Asp506Gly in Exon 13 of the F11 gene in an asymptomatic Korean woman with mild factor XI deficiency.

Not available

S-EPMC3190010 | biostudies-literature

Transcription factor binding dynamics during human ES cell differentiation

Pluripotent stem cells provide a powerful system to dissect the underlying molecular dynamics that regulate cell fate changes during mammalian development. Here we report the integrative analysis of genome wide binding data for 38 transcription factors with extensive epigenome and transcriptional da...

ORGANISM(S): Homo sapiens

2015-02-19 | E-GEOD-61475 | biostudies-arrayexpress

Genome-wide mapping of Nr5a2 in mouse embryonic stem cells

Nr5a2 (also known as liver receptor homolog-1, Lrh-1) has been shown to bind both the proximal enhancer and proximal promoter regions of Pou5f1 and regulate Pou5f1 in the epiblast stage of mouse embryonic development (Gu et al., 2005). Nr5a2-null embryos display a loss of Oct4 expression in the epib...

ORGANISM(S): Mus musculus

2010-01-22 | E-GEOD-19019 | biostudies-arrayexpress

Affymetrix SNP 6.0 array data for chordoma samples

Chordomas are rare, low to intermediate grade malignant bone tumors of the axial skeleton, believed to originate from the notochord. Treatment options are limited and mainly restricted to surgical excision, as chordomas have been proven to be largely resistant to conventional ionizing radiation and ...

ORGANISM(S): Homo sapiens

2012-07-11 | E-GEOD-25720 | biostudies-arrayexpress

Carotenoid Biosynthesis in Oriental Melon (Cucumis melo L. var. makuwa).

Not available

S-EPMC6406825 | biostudies-literature

Gene expression profiles of Herceptin-resistant breast cancer cells

Herceptin (trastuzumab) is a humanized monoclonal antibody targeted to the Her2 receptor tyrosine kinase. Despite a robust response rate to Herceptin-based therapies in Her2-positive patients, resistance frequently arises within one year of the initial response. To address the mechanism of Hercept...

ORGANISM(S): Homo sapiens

2009-08-21 | E-GEOD-15043 | biostudies-arrayexpress

Li₃TiCl₆ as ionic conductive and compressible positive electrode active material for all-solid-state lithium-based batteries.

Not available

S-EPMC10011600 | biostudies-literature

Molecular characterization of carotenoid biosynthetic genes and carotenoid accumulation in Scutellaria baicalensis Georgi.

Not available

S-EPMC4556017 | biostudies-literature

Barriers and facilitators to implementing pulmonary rehabilitation guidelines in China: a qualitative study using implementation science frameworks.

Not available

S-EPMC12039050 | biostudies-literature