Xia D D - OmicsDI

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Unknown (6738)
Transcriptomics (256)
Proteomics (170)
Metabolomics (129)
Genomics (37)
Models (5)
Other (1)

Organisms

Homo sapiens (116)
Mus musculus (105)
Arabidopsis thaliana (9)
Gallus gallus (8)
Rattus norvegicus (8)
Bombyx mori (8)
Canis lupus familiaris (6)
Drosophila melanogaster (5)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Oryza sativa (4)
Escherichia coli (4)
Sus scrofa (3)
Carassius auratus (3)
Saccharomyces cerevisiae (3)
Manihot esculenta (2)
Brugia malayi (2)
Bos taurus (2)
Escherichia coli str. K-12 substr. MG1655 (2)
activated sludge metagenome (1)
Drosophila rhopaloa (1)
Gracilaria tenuistipitata (1)
Bos grunniens (1)
Hevea brasiliensis (1)
Musa acuminata (1)
Cordyceps militaris (1)
Metarhizium acridum (1)
Locusta migratoria manilensis (1)
Citrus reticulata (1)
Streptococcus mutans UA159 (1)
Cucumis sativus (1)

Organisms

Peponocephala electra (3)
Carassius auratus (1)

Repository

biostudies-arrayexpress (278)
MetaboLights (129)
pride (111)
iProX (46)
EGA (9)
MassIVE (7)
BioModels (5)
ENA (5)
jPOST (2)
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geo (1)
GPMDB (1)
PAXDB (1)
PeptideAtlas (1)

Tissue

Cell culture (22)
Blood plasma (6)
Epithelial cell (6)
Brain (5)
Whole body (5)
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Blood serum (3)
Heart (3)
Testis (3)
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Kidney (3)
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Colonic mucosa (2)
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Seed (2)
Hepatocyte (2)
Brain (1)
Trophoblast cell line (1)
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Somatic cell (1)
Somatic embryo (1)
Excretory gland (1)
Trophoblast cell (1)
Dentin (1)
Secretion (1)
Excretion (1)
Bone (1)
Glioblast (1)

Disease

Malignant neoplasm of ovary (3)
Brain glioblastoma multiforme (2)
Colon cancer (2)
Endometrioid carcinoma (1)
Early-life seizures (1)
Bladder tumour (1)
Not Available (1)
Gastric body carcinoma (1)
Onchocerciasis (1)
Bacterial vaginosis (1)
Residual chronic schizophrenia (1)
Adult hepatocellular carcinoma (1)
Duodenal ulcer (1)
Porcine reproductive and respiratory syndrome (1)
Lung squamous cell carcinoma (1)
Lung non-squamous non-small cell carcinoma (1)
Inflammatory bowel disease 1 (1)
Filariasis (1)
Dilated cardiomyopathy (1)
Gastric adenocarcinoma (1)
Lymphoma (1)
Cervix carcinoma (1)
Melanoma (1)
Cardiovascular system disease (1)
Alzheimer's disease (1)
Renal cell carcinoma (1)
Myocardial ischemia (1)
COVID-19 (1)
Breast cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (111)
Mass spectrometry (105)
Shotgun proteomics (67)
NMR spectroscopy (15)
Data-dependent acquisition (14)
Bottom-up proteomics (12)
Gel-based experiment (11)
Mass spectrometry assay (9)
Affinity purification coupled with mass spectrometry proteomics (8)
SWATH MS (6)
Data-independent acquisition (4)
Top-down proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
DiaPASEF (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (46)
Liquid Chromatography MS - negative - reverse phase (37)
Nuclear Magnetic Resonance (NMR) - (11)
Gas Chromatography MS - positive (8)
Liquid Chromatography MS - alternating - hilic (8)
Liquid Chromatography MS - positive - hilic (8)
Liquid Chromatography MS - alternating - reverse phase (7)
Liquid Chromatography MS - negative - hilic (6)
Illumina HiSeq 2500 (5)
Flow injection analysis MS - negative (4)
Direct infusion MS - negative (4)
Gas Chromatography MS - (4)
Bruker (4)
Liquid Chromatography MS - negative (4)
Liquid Chromatography MS - positive (4)
Illumina HiSeq 2000 (3)
Q Exactive (3)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (3)
Gas Chromatography MS - Positive (GC-MS (Positive)) (3)
Direct infusion MS - positive (3)
Liquid Chromatography MS - (3)
Illumina MiSeq (2)
Illumina NovaSeq 6000 (2)
LTQ Orbitrap Velos (2)
LTQ Orbitrap (2)
Ion Torrent PGM (1)
Instrument (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion ETD (1)
Orbitrap Eclipse (1)

Publication Date

2013 (65)
2022 (62)
2014 (43)
2023 (36)
2021 (34)
2024 (31)
2015 (31)
2012 (31)
2016 (27)
2025 (26)
2010 (26)
2011 (22)
2018 (18)
2008 (18)
2026 (18)
2009 (15)
2019 (13)
2017 (12)
2020 (11)
2007 (9)
2006 (3)
2005 (2)

UNIPROT ID/AC

H9J4V7_BOMMO (1)
H9JI11_BOMMO (1)
B0FPE7_BOMMO (1)
H9J4G2_BOMMO (1)
H9J502_BOMMO (1)
H9B457_BOMMO (1)
H9J6U8_BOMMO (1)
H9JU96_BOMMO (1)
EF2_BOMMO (1)
H9JB50_BOMMO (1)
H9JC27_BOMMO (1)
H9JX51_BOMMO (1)
H9J1A5_BOMMO (1)
H9IS38_BOMMO (1)
H9JDV4_BOMMO (1)
Q2F605_BOMMO (1)
H9JXQ6_BOMMO (1)
H9JHU3_BOMMO (1)
H9JYJ8_BOMMO (1)
H9JMY8_BOMMO (1)
H9JMQ8_BOMMO (1)
H9J5D8_BOMMO (1)
H9JDG1_BOMMO (1)
H9JAZ9_BOMMO (1)
H9JTY2_BOMMO (1)
H9JXB3_BOMMO (1)
H9J885_BOMMO (1)
H9JCD8_BOMMO (1)
H9JHU4_BOMMO (1)
Q3LB95_BOMMO (1)

ENSEMBL ID

ENSG00000229353 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:30769 (41)
CHEBI:28044 (39)
CHEBI:15428 (38)
CHEBI:15354 (35)
CHEBI:17368 (34)
CHEBI:18237 (33)
CHEBI:18186 (33)
CHEBI:16708 (33)
CHEBI:16919 (33)
CHEBI:16704 (32)
CHEBI:16737 (32)
CHEBI:27897 (31)
CHEBI:17822 (30)
CHEBI:28300 (30)
CHEBI:6650 (30)
CHEBI:16335 (30)
CHEBI:17596 (30)
CHEBI:27266 (29)
CHEBI:7916 (29)
CHEBI:18012 (29)
CHEBI:32816 (29)
CHEBI:18257 (28)
CHEBI:24898 (28)
CHEBI:25017 (28)
CHEBI:17895 (28)
CHEBI:26271 (27)
CHEBI:25094 (27)
CHEBI:22660 (27)
CHEBI:15741 (27)
CHEBI:50183 (1)

Metabolite Name

Creatinine (27)
Glycine (26)
Uridine (26)
Choline (24)
Taurine (24)
Xanthine (24)
Creatine (24)
Inosine (23)
Citric acid (22)
Adenosine (22)
Adenine (22)
L-Tyrosine (22)
Hypoxanthine (21)
D-Glucose (20)
L-Proline (20)
Ornithine (20)
L-Glutamine (20)
Guanosine (20)
Leucine (19)
Phenylalanine (19)
Tryptophan (19)
L-Leucine (19)
L-Phenylalanine (19)
Uracil (18)
Valine (18)
L-Arginine (18)
Tyrosine (18)
Proline (18)
Cytidine (18)
L-Valine (18)

First Public Date

2025 (3)
2022 (1)
2014 (1)

Modelling Approach

Computational model (4)

Lab affiliation

School of Automation and Intelligent Sensing, Shanghai Jiao Tong University (5)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
Seer Inc. (2)
Infection Biology (2)
Department of Radiation and Medical Oncology, Zhongnan Hospital of Wuhan University (2)
Central South University (2)
Shenzhen People’s Hospital (2)
Institute of Integrative Biology, University of Liverpool (2)
National Institutes of Health (NIH) National Center for Advancing Translational Sciences (NCATS) (2)
State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400716, China (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
Faculty of Natural Sciences, Keele University, UK (2)
Associate Director of Analytical Services, Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA (1)
Biotech Research and Innovation Centre (BRIC), University of Copenhagen (UCPH), DK-2200 Copenhagen, Denmark (1)
Faculty of Natural Sciences, Keele University. (1)
Institute of Integrative Medicine,Xiangya Hospital,Central South University,Changsha,China (1)
Cardiovascular Center of Excellence, Louisiana State University Health Sciences Center, New Orleans, Louisiana, 70112, USA (1)
Donnelly Centre, University of Toronto Lunenfeld-Tanenbaum Research Institute, Sinai Health System (1)
Charles Perkins Centre, University of Sydney (1)
Department of Infection Biology Institute of Infection and Global Health University of Liverpool (1)
Department of Infection Biology Institute of Infection & Global Health University of Liverpool Liverpool Science Park IC2 146 Brownlow Hill Liverpool L3 5RF UK (1)
xuzhu medical university (1)
1Seer, Inc., Redwood City, CA 94065, USA; 4Center for Nanomedicine and Department of Anesthesiology, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA (1)
State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, PR China. (1)
Department of Cellular and Molecular Pharmacology Quantitative Biosciences Institute University of California San Francisco San Francisco, CA 94158, USA (1)
Department of Wound Infection and Drug, State Key Laboratory of Trauma, Burn and Combined Injury, Daping Hospital, Army Medical University (Third Military Medical University), Chongqing 400042, P. R. China (1)
College of Agriculture and Biotechnology, Zhejiang University (1)
Hubei Key Laboratory of Cell Homeostasis, College of Life Sciences, TaiKang Center for Life and Medical Sciences, Wuhan University, Wuhan 430072, China. (1)
McGill University - Rosalind & Morris Goodman Cancer Institute (1)
Laboratory of Pharmaceutical Biotechnology. Department of Pharmaceutics, Ghent University, Belgium (1)

IsPrivate

False (5)

Submitter Keywords

Ersilia (4)
Machine Learning Model (4)

Study type

Transcription profiling by array (183)
RNA-seq of coding RNA (49)
ChIP-seq (13)
Methylation profiling by high throughput sequencing (9)
RNA-seq of non coding RNA (7)
Comparative genomic hybridization by array (3)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
MicroRNA profiling by high throughput sequencing (2)
RIP-seq (2)
ChIP-chip by array (1)
Genotyping by array (1)
Other (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2025 (956)
2022 (942)
2023 (794)
2024 (756)
2021 (752)
2020 (552)
2019 (379)
2018 (304)
2017 (270)
2016 (264)
2015 (203)
2014 (193)
2013 (143)
2026 (130)
2012 (103)
2010 (75)
2011 (64)
2008 (44)
2009 (43)
2007 (15)
2006 (15)
2004 (4)
2005 (3)
2003 (3)
2002 (2)
2000 (2)
1999 (2)
1998 (2)
2001 (1)

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CAGE-Seq of gonads and carcasses from D. melanogaster and D. pseudoobscura

We performed CAGE-Seq on dissected ovaries and testes as well as female and male carcasses of two species of Drosophila (D. melanogaster and D. pseudoobscura). These data are used to map transcription start sites. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 ...

ORGANISM(S): Drosophila melanogaster

2015-02-26 | E-GEOD-66284 | biostudies-arrayexpress

Quantitative proteomics reveals the crucial roles of Cathepsin D in bacterial infections

Bacterial resistance has become more and more widespread which seriously threatens human life and health. Therefore, using the natural immune system of host to kill bacteria is particularly fascinating. Here, using mass spectrometry analyses, we depicted the dynamic expression landscape of mitochond...

ORGANISM(S): Mus Musculus

PXD016938 |

Metabolomics reveals an involvement of pantothenate for male production responding to the short-day stimulus in the water flea, Daphnia pulex

Under favorable conditions, the micro-crustacean Daphnia pulex produces female offspring by parthenogenesis, whereas in response to various unfavorable external cues, they produce male offspring to induce sexual reproduction (environmental sex determination: ESD). We recently established a suitable ...

2017-04-03 | MTBLS259 | MetaboLights

Factor XIa Inhibitors as a Novel Anticoagulation Target: Recent Clinical Research Advances.

Not available

S-EPMC10300994 | biostudies-literature

D- and Unnatural Amino Acid Substituted Antimicrobial Peptides With Improved Proteolytic Resistance and Their Proteolytic Degradation Characteristics.

Not available

S-EPMC7688903 | biostudies-literature

Targeting UDP-α-D-glucose 6-dehydrogenase inhibits glioblastoma growth and migration.

Not available

S-EPMC5957772 | biostudies-literature

Long-Term Social Isolation-Induced Autophagy Inhibition and Cell Senescence Aggravate Cognitive Impairment in D(+)Galactose-Treated Male Mice.

Not available