Xia Li L - OmicsDI

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Unknown (5153)
Proteomics (131)
Transcriptomics (93)
Metabolomics (75)
Genomics (19)
Models (1)

Organisms

Homo sapiens (79)
Mus musculus (43)
Bombyx mori (4)
Sus scrofa (4)
Arabidopsis thaliana (4)
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activated sludge metagenome (1)
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108887 (1)
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Aerodramus hirundinaceus (1)

Repository

biostudies-arrayexpress (105)
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pride (71)
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Cell culture (16)
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Heart (2)
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Disease

Disease free (3)
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Stomach cancer (1)
Vascular dementia (1)

Technology Type

Mass Spectrometry (71)
Mass spectrometry (64)
Shotgun proteomics (25)
Bottom-up proteomics (14)
Gel-based experiment (12)
NMR spectroscopy (9)
Data-dependent acquisition (8)
Affinity purification coupled with mass spectrometry proteomics (5)
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Data-independent acquisition (3)
Proteogenomics (3)
Top-down proteomics (3)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
Mass spectrometry assay (1)
Immunopeptidomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (28)
Liquid Chromatography MS - negative - reverse phase (26)
Gas Chromatography MS - positive (6)
Nuclear Magnetic Resonance (NMR) - (5)
Gas Chromatography MS - Positive (GC-MS (Positive)) (4)
Bruker (4)
Liquid Chromatography MS - negative (4)
Liquid Chromatography MS - positive (4)
Liquid Chromatography MS - alternating - reverse phase (4)
Liquid Chromatography MS - positive - hilic (4)
Gas Chromatography MS - (3)
Liquid Chromatography MS - alternating - hilic (3)
Liquid Chromatography MS - negative - hilic (3)
Direct infusion MS - negative (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - negative - HILIC (2)
Liquid Chromatography MS - positive - HILIC (2)
Ion Torrent PGM (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
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6550 Q-TOF LC-MS Agilent (1)
6520 Q-TOF LC/MS (Agilent) (1)
SYNAPT G2-XS QTOF (Waters, UK) (1)
Tandem Gas Chromatography MS - positive (1)
Direct infusion MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Nuclear Magnetic Resonance (NMR) (1)
Direct infusion MS - positive (1)

Publication Date

2022 (40)
2023 (30)
2021 (28)
2024 (26)
2014 (23)
2025 (22)
2015 (18)
2026 (15)
2013 (14)
2012 (14)
2020 (13)
2019 (12)
2018 (12)
2010 (11)
2016 (10)
2011 (9)
2007 (6)
2017 (4)
2005 (2)
2008 (2)
2009 (1)

UNIPROT ID/AC

A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WVZ5 (1)
A0A087WWA5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1S3 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0M8Q6 (1)
A0MZ66 (1)
A0PJX4 (1)
A1L0T0 (1)
A1L390 (1)
A2A3K4 (1)
A2BFH1 (1)
A2NUT2 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:18186 (21)
CHEBI:28044 (21)
CHEBI:16708 (19)
CHEBI:24898 (19)
CHEBI:18237 (19)
CHEBI:27897 (19)
CHEBI:17822 (18)
CHEBI:22660 (18)
CHEBI:28300 (18)
CHEBI:6650 (18)
CHEBI:15428 (18)
CHEBI:17368 (18)
CHEBI:30769 (18)
CHEBI:25017 (17)
CHEBI:16704 (17)
CHEBI:15741 (17)
CHEBI:32816 (17)
CHEBI:18012 (17)
CHEBI:16449 (17)
CHEBI:17596 (17)
CHEBI:16811 (16)
CHEBI:27266 (16)
CHEBI:17568 (16)
CHEBI:16919 (16)
CHEBI:15354 (16)
CHEBI:26271 (15)
CHEBI:7916 (15)
CHEBI:26986 (14)
CHEBI:15891 (14)
CHEBI:25094 (14)

Metabolite Name

Uridine (13)
Citric acid (12)
Isoleucine (12)
Adenine (12)
Xanthine (12)
Tryptophan (12)
Inosine (12)
Glycine (11)
Uracil (11)
Choline (11)
Tyrosine (11)
Adenosine (11)
Threonine (11)
Phenylalanine (11)
Creatine (11)
Hypoxanthine (11)
Histidine (10)
Leucine (10)
Pyruvic acid (10)
Proline (10)
Glutamine (10)
Guanosine (10)
Valine (9)
Methionine (9)
Malic acid (9)
Asparagine (9)
D-Glucose (9)
Alanine (9)
Ornithine (8)
Taurine (8)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (52)
RNA-seq of coding RNA (28)
Methylation profiling by high throughput sequencing (6)
ChIP-seq (5)
RNA-seq of non coding RNA (5)
Comparative genomic hybridization by array (3)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Other (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2025 (778)
2022 (722)
2023 (652)
2024 (625)
2021 (569)
2020 (437)
2019 (288)
2018 (239)
2017 (194)
2016 (183)
2015 (148)
2026 (116)
2014 (106)
2013 (62)
2012 (47)
2011 (28)
2010 (22)
2009 (15)
2008 (12)
2007 (8)
2005 (3)
2006 (3)
2004 (1)

Lab affiliation

Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
Central South University (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China. (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
State Key Laboratory of Oncology in South China (2)
Tianjin Medical University Cancer Institute and Hospital (2)
Zhejiang University (2)
1Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. 2Institute of Health Sciences, Shanghai Institutes for Biological Sciences of Chinese Academy of Sciences and SJTU-SM, Shanghai 200025, China. (1)
Basic Medicine, Guangxi University of Chinese Medicine, Nanning, China (1)
Bio-tech Research Center, Shandong Academy of Agricultural Sciences, Jinan, China. (1)
Bio-tech Research Center, Shandong Academy of Agricultural Sciences, Jinan,China. (1)
Bio-tech Research center, Shandong Academy of Agricultural Science, Jinan, China. (1)
Biological Science Research Center, Southwest University, Chongqing, 400715, China. (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)
Changhai Hospital, Naval Medical University, Shanghai, 200433, China. (1)
China Agricultural University (1)
China Medical University School of Forensic Medicine (1)
Clinical Medical Research Center, Southwest Hospital, Third Military Medical University (Army Medical University) (1)
College of Marine Life Sciences, Ocean University of China, Qingdao, China (1)
College of Pharmacy, Jinan University, Guangzhou, China (1)
Department of Anesthesiology, Nanjing Drum Tower Hospital,Affiliated Hospital of Medical School,Nanjing University (1)
Department of Biomedical Sciences, City University of Hong Kong, Hong Kong, China (1)
Department of Burn Surgery, the First Affiliated Hospital of Naval Medical University, Shanghai, People’s Republic of China; Research Unit of key techniques for treatment of burns and combined burns and trauma injury, Chinese Academy of Medical Sciences, Shanghai, China. (1)
Department of Gastroenterology, The First Affiliated Hospital of Naval Medical University, Shanghai, 200433, China (1)
Department of Molecular and Cellular Oncology, MD Anderson Cancer Center, Houston, TX USA (1)
Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Rui-Jin Hospital, and State Key Laboratory of Oncogenes and Related Genes and Chinese Academy of Medical Sciences Research Unit (NO.2019RU043), Shanghai Cancer Institute, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China. (1)
Department of Redox Molecular Medicine, Tohoku University Graduate School of Medicine (1)
Department of Surgery, University of Michigan Medical School, Ann Arbor, MI, USA (1)

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Two Chinese Xia-Gibbs syndrome patients with partial growth hormone deficiency.

Not available

S-EPMC6465669 | biostudies-literature

A Genome-Wide Characterization of New and Drought Stress Responsive MicroRNAs in Populus euphratica

We present an efficient method to genome-wide discover new and drought stress responsive miRNAs in P. euphratica. High throughput sequencing of P. euphratica leaves found 197 conserved miRNAs between P. euphratica and Populus trichocarpa. Meanwhile, 189 new miRNAs which belonged to 120 families were...

ORGANISM(S): Populus euphratica

2011-04-25 | E-GEOD-25747 | biostudies-arrayexpress

Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

Phenotypic and protein localization heterogeneity associated with AHDC1 pathogenic protein-truncating alleles in Xia-Gibbs syndrome.

Not available

S-EPMC8115934 | biostudies-literature

Two-way crosstalk between BER and c-NHEJ repair pathway is mediated by Pol-β and Ku70.

Not available

S-EPMC6902736 | biostudies-literature

Phosphoproteomics study on protein kinase C delta induced cell death

The proteolytic activation of protein kinase C delta generates a catalytic fragment called PKC delta-CF, which induces cell death. However, the mechanisms underlying PKC delta-CF-mediated cell death are largely unknown. On the basis of an engineering leukemic cell line with inducible expression of P...

ORGANISM(S): Homo sapiens (Human)

2013-07-26 | PXD000225 | Pride

Pkcdelta phosphoproteomics apoptosis