Xia M M - OmicsDI

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Unknown (8296)
Proteomics (284)
Transcriptomics (223)
Metabolomics (152)
Genomics (49)
Models (3)

Organisms

Homo sapiens (231)
Mus musculus (123)
Bombyx mori (15)
Rattus norvegicus (11)
Arabidopsis thaliana (10)
Escherichia coli (10)
Gallus gallus (8)
Oryza sativa (8)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (6)
Canis lupus familiaris (6)
Drosophila melanogaster (6)
Sus scrofa (5)
Saccharomyces cerevisiae (4)
Manihot esculenta (2)
Brugia malayi (2)
Campylobacter jejuni (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Bos taurus (2)
Alphainfluenzavirus (1)
Pseudomonas phage PaP1 (1)
activated sludge metagenome (1)
Drosophila rhopaloa (1)
Gracilaria tenuistipitata (1)
Bos grunniens (1)
Methanococcus maripaludis (1)
Musa acuminata (1)
Cordyceps militaris (1)
Metarhizium acridum (1)
Cronobacter sakazakii ATCC BAA-894 (1)
Bacteria (1)

Organisms

Peponocephala electra (3)
Erythranthe lewisii (1)

Repository

biostudies-arrayexpress (252)
pride (225)
MetaboLights (152)
iProX (50)
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Tissue

Cell culture (58)
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Saliva (2)
Brain (1)

Disease

Disease free (7)
Alzheimer's disease (3)
Brain glioblastoma multiforme (3)
Colon cancer (3)
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Brain cancer (2)
Breast cancer (2)
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Lung cancer (2)
Malignant neoplasm of ovary (2)
Pancreatic carcinoma (2)
Prostate adenocarcinoma (2)
Wounds and Injuries (2)
Bladder tumour (1)
Acute leukemia (1)
Adult hepatocellular carcinoma (1)
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COVID-19 (1)
Diarrhea (1)
Diffuse gastric cancer (1)
Dilated cardiomyopathy (1)
Duodenal ulcer (1)
Filariasis (1)
Gastric adenocarcinoma (1)
Gastric body carcinoma (1)
Glioblastoma (1)
Head and neck squamous cell carcinoma (1)
Heart failure (1)
Hepatitis B (1)

Technology Type

Mass Spectrometry (225)
Mass spectrometry (121)
Shotgun proteomics (103)
Bottom-up proteomics (38)
Gel-based experiment (25)
Data-dependent acquisition (23)
Affinity purification coupled with mass spectrometry proteomics (20)
NMR spectroscopy (17)
Mass spectrometry assay (13)
Data-independent acquisition (13)
Top-down proteomics (9)
SWATH MS (6)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
SRM/MRM (5)
NMR spectroscopy assay (2)
All-ion fragmentation (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
DiaPASEF (1)
Immunopeptidomics (1)
MSE (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (56)
Liquid Chromatography MS - negative - reverse phase (46)
Nuclear Magnetic Resonance (NMR) - (13)
Liquid Chromatography MS - positive - hilic (9)
Gas Chromatography MS - positive (8)
Liquid Chromatography MS - alternating - hilic (8)
Liquid Chromatography MS - negative - hilic (7)
Direct infusion MS - negative (6)
Liquid Chromatography MS - alternating - reverse phase (6)
Direct infusion MS - positive (5)
Gas Chromatography MS - Positive (GC-MS (Positive)) (5)
Liquid Chromatography MS - negative (5)
Liquid Chromatography MS - positive (5)
Illumina HiSeq 2000 (4)
Bruker (4)
Flow injection analysis MS - negative (4)
Gas Chromatography MS - (4)
Liquid Chromatography MS - positive - reverse-phase (4)
Liquid Chromatography MS - (3)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (3)
Illumina MiSeq (2)
Illumina HiSeq 2500 (2)
LTQ Orbitrap (2)
G2565BA DNA microarray scanner [Agilent] (1)
Ion Torrent PGM (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap Velos (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion ETD (1)
Various (1)

Publication Date

2022 (83)
2023 (62)
2013 (62)
2024 (55)
2021 (54)
2025 (53)
2014 (45)
2026 (45)
2015 (29)
2010 (29)
2012 (28)
2018 (25)
2011 (22)
2019 (18)
2020 (16)
2016 (16)
2009 (15)
2008 (15)
2017 (9)
2007 (4)
2005 (3)
2006 (1)

UNIPROT ID/AC

A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WVZ5 (1)
A0A087WWA5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1S3 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0M8Q6 (1)
A0MZ66 (1)
A0PJX4 (1)
A1L0T0 (1)
A1L390 (1)
A2A3K4 (1)
A2BFH1 (1)
A2NUT2 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:28044 (44)
CHEBI:30769 (43)
CHEBI:15428 (39)
CHEBI:18186 (37)
CHEBI:15354 (36)
CHEBI:16708 (36)
CHEBI:18237 (36)
CHEBI:16704 (35)
CHEBI:17368 (35)
CHEBI:16919 (34)
CHEBI:17596 (33)
CHEBI:18012 (33)
CHEBI:27897 (33)
CHEBI:7916 (33)
CHEBI:16335 (32)
CHEBI:16737 (32)
CHEBI:17822 (32)
CHEBI:17895 (32)
CHEBI:28300 (32)
CHEBI:24898 (31)
CHEBI:32816 (31)
CHEBI:6650 (31)
CHEBI:15741 (30)
CHEBI:18257 (30)
CHEBI:22660 (30)
CHEBI:26271 (30)
CHEBI:27266 (30)
CHEBI:15756 (29)
CHEBI:16811 (29)
CHEBI:17295 (29)

Metabolite Name

Uridine (28)
Choline (27)
Glycine (27)
Adenine (26)
Adenosine (26)
Creatine (26)
Creatinine (26)
Inosine (25)
Xanthine (24)
Hypoxanthine (23)
L-Tyrosine (23)
Taurine (23)
L-Glutamine (22)
L-Proline (22)
Ornithine (22)
Phenylalanine (22)
Citric acid (21)
D-Glucose (21)
L-Leucine (21)
Tyrosine (21)
Uracil (21)
Guanosine (20)
L-Arginine (20)
L-Tryptophan (20)
Proline (20)
Tryptophan (20)
Histidine (19)
L-Phenylalanine (19)
L-Threonine (19)
L-Valine (19)

First Public Date

2025 (4)
2020 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

School of Automation and Intelligent Sensing, Shanghai Jiao Tong University (5)
Central South University (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
The Second Hospital of Dalian Medical University (3)
Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, Zürich, Switzerland Faculty of Science, University of Zürich, Zürich, Switzerland (2)
Department of Radiation and Medical Oncology, Zhongnan Hospital of Wuhan University (2)
Faculty of Natural Sciences, Keele University, UK (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
National Institutes of Health (NIH) National Center for Advancing Translational Sciences (NCATS) (2)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, 5 Dong Dan San Tiao, Dongcheng District, Beijing 100005, China. (2)
Northeast Normal University (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
Seer Inc. (2)
Shenzhen People’s Hospital (2)
State Key Laboratory of Natural and Biomimetic Drugs, Department of Molecular and Cellular Pharmacology, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China. (2)
State Key Laboratory of Oncology in South China (2)
State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400716, China (2)
Tianjin Medical University Cancer Institute and Hospital (2)
Tongji University (2)
Zhejiang University (2)
1 Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2 Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3 Taikang Center for Life and Medical Sciences of Wuhan University (1)
1Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3Taikang Center for Life and Medical Sciences of Wuhan University (1)
1Department of Medicine, University of Minnesota, 420 Delaware Street, SE, Minneapolis, Minnesota 55455, USA (1)
1Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. 2Institute of Health Sciences, Shanghai Institutes for Biological Sciences of Chinese Academy of Sciences and SJTU-SM, Shanghai 200025, China. (1)
1Seer, Inc., Redwood City, CA 94065, USA; 4Center for Nanomedicine and Department of Anesthesiology, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA (1)
Affiliated Hospital of Nanjing University of Chinese Medicine (1)
Affiliated Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
Assistant Professor of Biological Sciences Augusta University C2014 Science Hall 2500 Walton Way, Augusta-GA (1)
Assistant Professor, Department of Chemistry Assistant Professor, Department of Biology (by courtesy) Assistant Professor, Thomas C. Jenkins Department of Biophysics (by courtesy) Preceptor, Chemistry-Biology Interface (CBI) Program (1)
Assistant Professor, Department of Chemistry Assistant Professor, Thomas C. Jenkins Department of Biophysics (by courtesy) (1)

IsPrivate

False (3)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (156)
RNA-seq of coding RNA (39)
Methylation profiling by high throughput sequencing (15)
ChIP-seq (13)
RNA-seq of non coding RNA (10)
Comparative genomic hybridization by array (4)
Unknown experiment type (3)
ChIP-chip by tiling array (3)
Other (2)
Methylation profiling by array (2)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Genotyping by array (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2025 (1206)
2022 (1103)
2023 (981)
2024 (955)
2021 (876)
2020 (640)
2019 (459)
2018 (421)
2016 (332)
2017 (328)
2015 (240)
2014 (223)
2013 (182)
2026 (171)
2012 (103)
2011 (80)
2010 (74)
2009 (59)
2008 (53)
2007 (20)
2006 (13)
2005 (8)
2004 (7)
2003 (3)
2002 (3)
2000 (2)
1999 (2)
1998 (2)
2001 (1)

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Comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum during infection on different insects

We used RNA-Seq to compare transcriptional responses of M. anisopliae and M. acridum to infection of the optically clear hind wings of adult locusts and cockroaches. It was calculated that >82% of predicted M. anisopliae genes and >88% of predicted M. acridum genes were expressed during pre-penetrat...

ORGANISM(S): Metarhizium acridum

2011-01-31 | E-GEOD-24938 | biostudies-arrayexpress

Untargeted metabolomics profiling reveals exercise intensity-dependent alterations in Thoroughbred racehorses’ plasma after routine conditioning sessions

Thoroughbred (TB) racehorses are subjected to rigorous conditioning programs involving exercise sessions of various types, distances and intensities. These programs aim to optimize both their physical and mental capabilities, which are essential to achieve maximal performance. Conventional invest...

2024-01-16 | MTBLS8285 | MetaboLights

The phenotypic spectrum of Xia-Gibbs syndrome.

Not available

S-EPMC6231716 | biostudies-literature

Multi-country metabolic signature discovery for chicken health classification

INTRODUCTION: To decrease antibiotic resistance, their use as growth promoters in the agricultural sector has been largely abandoned. This may lead to decreased health due to infectious disease or microbiome changes leading to gut inflammation.

OBJECTIVES: ...

2023-08-08 | MTBLS5065 | MetaboLights

Discussion on "LEAP: the latent exchangeability prior for borrowing information from historical data" by Ethan M. Alt, Xiuya Chang, Xun Jiang, Qing Liu, May Mo, H. Amy Xia, and Joseph G. Ibrahim.

Not available

S-EPMC11427888 | biostudies-literature

Characterization of the transcriptomes of genetically diverse Listeria monocytogenes exposed to hyperosmotic and low temperature conditions

A screening process was used to determine hyperosmotic as well as cold stress tolerance of a diverse set of Listeria monocytogenes strains and was based on the capacity to grow at sub lethal levels of NaCl and 4M-BM-0C. Analysis of gene expression in cells adapted to cold and hyperosmotic stress rev...

ORGANISM(S): Listeria monocytogenes

2013-05-04 | E-GEOD-46612 | biostudies-arrayexpress

CVm6A: A Visualization and Exploration Database for m⁶As in Cell Lines.

Not available

S-EPMC6406471 | biostudies-literature

E3 Ubiquitin ligases Cbl-b and c-Cbl maintain the homeostasis of macrophages by regulating the M-CSF/M-CSFR signaling axis.

Not available

S-EPMC12504418 | biostudies-literature

TeV/m catapult acceleration of electrons in graphene layers.

Not available

S-EPMC9873800 | biostudies-literature

Characterization of CTX-M-14-producing Escherichia coli from food-producing animals.