Xie H H - OmicsDI

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Unknown (20575)
Proteomics (468)
Transcriptomics (207)
Genomics (77)
Metabolomics (69)
Models (4)
Other (4)
Genomic (1)

Organisms

Homo sapiens (220)
Mus musculus (102)
Arabidopsis thaliana (13)
Rattus norvegicus (10)
Drosophila melanogaster (9)
Oryza sativa Japonica Group (3)
Bos taurus (3)
Oryctolagus cuniculus (2)
Zea mays (2)
Sus scrofa (2)
Iridovirus (1)
Epinephelus coioides (1)
Larimichthys crocea (1)
Pinctada fucata (1)
Shewanella loihica PV-4 (1)
Plutella xylostella (1)
Rhodococcus opacus (1)
Beauveria bassiana (1)
Vitis labrusca x Vitis vinifera (1)
Sclerotinia sclerotiorum (1)
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Herpesvirus saimiri (strain 11) (1)
Tomato yellow leaf curl China virus (1)
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Mytilus edulis (1)
Dirofilaria immitis (1)
Zea mays subsp. mays (1)

Organisms

Mus musculus (2)
Homo sapiens (2)
Arabidopsis (1)
synthetic construct (1)
Arabidopsis thaliana (1)

Repository

pride (299)
biostudies-arrayexpress (233)
iProX (149)
MetaboLights (67)
EGA (40)
MassIVE (13)
ENA (10)
BioModels (4)
geo (4)
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GNPS (2)
PeptideAtlas (2)
dbGaP (1)
GPMDB (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (64)
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Others (2)

Disease

Breast cancer (9)
Disease free (7)
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Cervix carcinoma (4)
Cardiovascular system disease (3)
Prostate adenocarcinoma (3)
Acute leukemia (2)
Alzheimer's disease (2)
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Liver cancer (2)
Liver carcinoma (2)
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Wounds and Injuries (2)
Invasive carcinoma (1)
Mammary tumor (1)
VSV infection (1)
Not Available (1)
Acute kidney failure (1)
Acute myeloid leukemia (1)
Brain glioblastoma multiforme (1)
COVID-19 (1)
Carcinoma (1)
Cerebrovascular disease (1)
Cholangiocarcinoma (1)
Dermatofibrosarcoma protuberans (1)
Esophagus adenocarcinoma (1)
Hemorrhagic stroke (1)
Human immunodeficiency virus infectious disease (1)
Ischemic stroke (1)

Technology Type

Mass Spectrometry (299)
Shotgun proteomics (145)
Mass spectrometry (61)
Bottom-up proteomics (57)
Affinity purification coupled with mass spectrometry proteomics (29)
Data-dependent acquisition (29)
Gel-based experiment (23)
Top-down proteomics (14)
Data-independent acquisition (13)
Mass spectrometry assay (6)
SRM/MRM (4)
Affinity proteomics (3)
All-ion fragmentation (3)
MSE (3)
SWATH MS (3)
DiaPASEF (2)
Proteogenomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)
Olink affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (28)
Liquid Chromatography MS - positive - reverse phase (28)
Orbitrap Fusion Lumos (5)
Liquid Chromatography MS - (5)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Q Exactive (4)
Gas Chromatography MS - positive (4)
Illumina HiSeq 2500 (3)
Illumina HiSeq 2000 (3)
6540 Q-TOF LC/MS (Agilent) (3)
Xevo G2 QTOF (Waters) (3)
Illumina NovaSeq 6000 (2)
Orbitrap Exploris 480 (2)
TOF Pegasus HT (LECO) (2)
Capillary electrophoresis MS - negative (2)
Capillary electrophoresis MS - positive (2)
BD FACSAria™ III (1)
10X genomics Chromium X (1)
BD FACSAriaII cell sorter (1)
Affymetrix Genechip Command Console software (1)
Trizol Reagent (1)
418 [Affymetrix] (1)
HiSeq X Ten (1)
MicrOTOF-Q II (1)
Instrument (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
TripleTOF 5600 (1)
ZenoTOF 7600 (1)

Publication Date

2024 (94)
2022 (91)
2025 (90)
2023 (66)
2021 (51)
2026 (42)
2020 (39)
2014 (33)
2012 (33)
2013 (30)
2010 (29)
2019 (28)
2016 (28)
2015 (28)
2011 (24)
2009 (23)
2017 (20)
2018 (17)
2008 (7)
2005 (2)
2007 (2)
2006 (1)

UNIPROT ID/AC

Q9TW49 (1)
Q9VMS4 (1)
Q59E16 (1)
O61734 (1)
O61735 (1)
P07663 (1)
3MG2_ECOLI (1)
3PASE_ECOLI (1)
5FCL_ECOLI (1)
6PGD_ECOLI (1)
A2MG_ECOLI (1)
AAT_ECOLI (1)
ABGB_ECOLI (1)
ACDH_ECOLI (1)
ACKA_ECOLI (1)
ACNB_ECOLI (1)
ACPS_ECOLI (1)
ACYP_ECOLI (1)
ADIA_ECOLI (1)
AG43_ECOLI (1)
AIDB_ECOLI (1)
AK2H_ECOLI (1)
ALAA_ECOLI (1)
ALDA_ECOLI (1)
ALDB_ECOLI (1)
ALF1_ECOLI (1)
ALF_ECOLI (1)
ALLC_ECOLI (1)
ALR1_ECOLI (1)
ALR2_ECOLI (1)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000170477 (2)
ENSG00000247315 (2)

CHEBI ID

CHEBI:17385 (11)
CHEBI:11726 (1)
CHEBI:28403 (1)
CHEBI:1117 (1)
CHEBI:19598 (1)
CHEBI:1430 (1)
CHEBI:19932 (1)
CHEBI:19600 (1)
CHEBI:1169 (1)
CHEBI:19655 (1)
CHEBI:1687 (1)
CHEBI:42317 (1)
CHEBI:23616 (1)
CHEBI:13960 (1)
CHEBI:23093 (1)
CHEBI:3593 (1)
CHEBI:57884 (1)
CHEBI:23094 (1)
CHEBI:3588 (1)
CHEBI:14734 (1)
CHEBI:25843 (1)
CHEBI:872 (1)
CHEBI:28907 (1)
CHEBI:11417 (1)
CHEBI:19325 (1)
CHEBI:19306 (1)
CHEBI:41885 (1)
CHEBI:19307 (1)
CHEBI:18900 (1)
CHEBI:495 (1)

Metabolite Name

Guanosine (16)
Inosine (16)
Hypoxanthine (15)
Uracil (14)
Guanine (14)
Uridine (14)
Taurine (13)
Azelaic acid (13)
L-Phenylalanine (13)
Adenine (12)
L-Tyrosine (12)
Citric acid (11)
Suberic acid (11)
Riboflavin (11)
Cytidine (11)
Creatine (11)
Pantothenic acid (10)
Adenosine (10)
Cytosine (10)
Porphobilinogen (10)
L-Tryptophan (10)
L-Serine (10)
Phenylacetaldehyde (9)
L-Threonine (9)
Nicotinamide (9)
Choline (9)
Xanthosine (9)
L-Proline (9)
L-Arginine (9)
Spermidine (9)

First Public Date

2026 (3)
2020 (3)
2014 (2)
2024 (1)
2018 (1)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Lab affiliation

Affiliated Eye Hospital of Shandong University of Traditional Chinese Medicine (5)
Third Military Medical University (4)
Tsinghua University, China (4)
Shandong Normal University (3)
State Key Laboratory for Development and Utilization of Forest Food Resources, Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China (3)
Zhejiang University (3)
Department of Biochemistry and Molecular Biology, Capital Medical University, Beijing, 100069, China (2)
Department of Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (2)
Faculty of Pharmacy, Hubei University of Chinese Medicine (2)
Farnusch Kaschani, Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Nanjing Medical University (2)
School of Life Sciences, Tsinghua University, China (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China ( lab head ) (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
South China Agricultural University (2)
Southwest University (2)
St Jude Children's Research Hospital (2)
St. Jude Children's Research Hospital (2)
State Key Laboratory of Oncology in South China (2)
State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
Xiangya Hospital, Central South University (2)
1 Affiliated Hangzhou First People’s Hospital, State Key Laboratory of Medical Proteomics, School of Medicine, School of Future Biomedicine, Westlake University, Hangzhou, Zhejiang Province, China. 2 Westlake Center for Intelligent Proteomics, Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang Province, China. 3 Research Center for Industries of the Future, School of Life Sciences, Westlake University, Hangzhou, Zhejiang Province, China. (1)
1 Department of Clinical Nutrition, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China 2 Clinical Research Center, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China (1)
1 Department of Emergency, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (1)
1.College of Veterinary Medicine, College of Animal Science, Jilin University, Changchun, 130062, China. 2. Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun, 130122, China. (1)
1Department of Hematology, Xiangya Hospital, Central South University, Changsha 410080, China 2NHC Key Laboratory of Carcinogenesis, Department of Microbiology, School of Basic Medical Science, Central South University, Changsha 410078, China (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)

IsPrivate

False (4)

Model Flag

Non Kinetic (1)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
15.994915 (1)
57.021464 (1)
6x(2)H labeled dimethylated L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (123)
RNA-seq of coding RNA (39)
ChIP-seq (17)
ChIP-chip by tiling array (10)
RNA-seq of non coding RNA (9)
Methylation profiling by high throughput sequencing (8)
MicroRNA profiling by array (6)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
Genotyping by array (2)
Transcription profiling by RT-PCR (2)
DNA-seq (2)
Methylation profiling by array (2)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Other (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2025 (3345)
2022 (2791)
2024 (2627)
2023 (2551)
2021 (2152)
2020 (1558)
2019 (1087)
2018 (893)
2017 (772)
2016 (614)
2015 (500)
2026 (467)
2014 (383)
2013 (256)
2012 (202)
2011 (164)
2009 (162)
2010 (132)
2008 (70)
2007 (29)
2006 (15)
2005 (13)
2004 (11)
2003 (5)
2002 (4)
2001 (2)
2000 (2)
1997 (1)

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Late-stage trifluoromethylthiolation of benzylic C-H bonds.

Not available

S-EPMC6814834 | biostudies-literature

Rhodium catalyzed cascade cyclization featuring B-H and C-H activation: one-step construction of carborane-fused N-polyheterocycles.

Not available

S-EPMC6115682 | biostudies-literature

Classification of three temporal kinetic transcripts of SGIV

Singapore grouper iridovirus (SGIV) is the major agent that causes severe iridovirus diseases in grouper maricluture. Based on the genomic information, a DNA microarray, containing probes corresponding to 162 putative SGIV open reading frames (ORFs) was constucted. The viral microarrays wereused to ...

ORGANISM(S): Epinephelus coioides

2010-06-29 | E-GEOD-7154 | biostudies-arrayexpress

Whole-genome transcriptional profiles of SGIV both in vitro and in vivo

Singapore grouper iridovirus (SGIV) is the major agent that causes severe iridovirus diseases in grouper maricluture. Based on the genomic information, a DNA microarray, containing probes corresponding to 162 putative SGIV open reading frames (ORFs), was constructed to map the viral gene transcripti...

ORGANISM(S): Iridovirus

2010-06-26 | E-GEOD-7151 | biostudies-arrayexpress

Highly selective single and multiple deuteration of unactivated C(sp³)-H bonds.

Not available

S-EPMC9307835 | biostudies-literature

Interprotomer Communication and Functional Asymmetry in H/ACA snoRNPs.

Not available

S-EPMC12157440 | biostudies-literature

Human rhinovirus infection causes different DNA methylation changes in nasal epithelial cells from healthy and asthmatic subjects

Background: Mechanisms underlying the development of virus-induced asthma exacerbations remain unclear. Objective: To investigate if epigenetic mechanisms could be involved in virus-induced asthma exacerbations, we undertook DNA methylation profiling in asthmatic and healthy nasal epithelial cells (...

ORGANISM(S): Homo sapiens

2014-07-28 | E-GEOD-52074 | biostudies-arrayexpress

Enantioselective Intermolecular Radical C-H Amination.

Not available

S-EPMC7726091 | biostudies-literature

Gene expression profiling of rice embryogenic calli after Agrobacterium infection

Agrobacterium tumefaciens-mediated genetic transformation has been routinely used in rice for more than a decade. However, the transformation efficiency of the indica rice variety is still unsatisfactory and much lower than that of japonica cultivars. Further improvement on the transformation effici...

ORGANISM(S): Oryza sativa Japonica Group

2012-01-01 | E-GEOD-32426 | biostudies-arrayexpress

Mechanistic study of N-H- and H-N-codoping of a TiO₂ photocatalyst for efficient degradation of benzene under visible light.

Not available

S-EPMC9048430 | biostudies-literature

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21405 Results

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