Xie J J - OmicsDI

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Unknown (25717)
Proteomics (538)
Transcriptomics (122)
Genomics (70)
Metabolomics (52)
Models (1)
Genomic (1)
Other (1)

Organisms

Homo sapiens (185)
Mus musculus (103)
Rattus norvegicus (10)
Escherichia coli (10)
Arabidopsis thaliana (5)
Drosophila melanogaster (4)
Ovis aries (4)
Oryza sativa (4)
Saccharomyces cerevisiae (4)
Oryctolagus cuniculus (3)
Zea mays (3)
Macaca mulatta (2)
Gallus gallus (2)
Capra hircus (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Iridovirus (1)
Epinephelus coioides (1)
Larimichthys crocea (1)
Rhodococcus opacus (1)
Oryza rufipogon (1)
Sclerotinia sclerotiorum (1)
Taenia multiceps (1)
Mytilus edulis (1)
Dirofilaria immitis (1)
Clonorchis sinensis (1)
Oryza sativa Indica Group (1)
Solanum tuberosum (1)
Setaria italica (1)
Caenorhabditis elegans (1)
Sus scrofa (1)

Organisms

Homo sapiens (2)
Mus musculus (1)

Repository

pride (321)
iProX (181)
biostudies-arrayexpress (144)
MetaboLights (51)
EGA (43)
MassIVE (27)
jPOST (5)
ENA (3)
geo (2)
PeptideAtlas (2)
BioModels (1)
dbGaP (1)
GNPS (1)
GPMDB (1)
LINCS (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (75)
Brain (24)
Epithelial cell (24)
Liver (23)
Testis (14)
Heart (11)
Blood plasma (11)
Leaf (10)
Hepatocyte (10)
Lung (10)
Plant cell (9)
Blood serum (9)
Spleen (8)
Permanent cell line cell (8)
Kidney (8)
Whole body (7)
Bone marrow (6)
Macrophage (5)
Root (5)
Blood (5)
Smooth muscle cell (4)
Retina (4)
Embryonic stem cell (4)
Skin (4)
Cell suspension culture (4)
Stem cell (4)
Fibroblast (4)
Primary cell (4)
Malignant cell (3)
Others (2)

Disease

Disease free (12)
Breast cancer (5)
Hepatocellular carcinoma (4)
Prostate adenocarcinoma (4)
Alzheimer's disease (4)
Colon cancer (4)
Cervix carcinoma (3)
Cardiovascular system disease (3)
Acute myeloid leukemia (3)
Acute leukemia (3)
Brain glioblastoma multiforme (2)
Cholangiocarcinoma (2)
Brain cancer (2)
Osteoporosis (2)
Malignant neoplasm of ovary (2)
Liver cancer (2)
Rheumatoid arthritis (2)
Type 2 diabetes mellitus (2)
Mammary tumor (1)
VSV infection (1)
Not Available (1)
Residual chronic schizophrenia (1)
Dermatofibrosarcoma protuberans (1)
Esophageal disease (1)
Acute kidney failure (1)
Ischemic stroke (1)
Hemorrhagic stroke (1)
Antenatal onset (1)
Hydronephrosis (1)
Esophagus adenocarcinoma (1)

Technology Type

Mass Spectrometry (321)
Shotgun proteomics (150)
Bottom-up proteomics (51)
Mass spectrometry (48)
Data-dependent acquisition (30)
Affinity purification coupled with mass spectrometry proteomics (27)
Gel-based experiment (22)
Data-independent acquisition (18)
Top-down proteomics (17)
SWATH MS (7)
SRM/MRM (5)
All-ion fragmentation (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Mass spectrometry assay (3)
Proteogenomics (3)
Affinity proteomics (3)
Mass spectrometry imaging (2)
MSE (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Fluorescence intensity (1)
Fluorescence imaging (1)
Olink affinity proteomics (1)
RNA mass spectrometry (1)
Immunopeptidomics (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (22)
Liquid Chromatography MS - negative - reverse phase (21)
Illumina HiSeq 2000 (7)
Orbitrap Fusion Lumos (6)
Illumina HiSeq 2500 (5)
Q Exactive (5)
LTQ Orbitrap Velos (5)
Liquid Chromatography MS - (5)
Q Exactive Plus (3)
Orbitrap Exploris 480 (3)
6540 Q-TOF LC/MS (Agilent) (3)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
ZenoTOF 7600 (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
10X Genomics Chromium Single Cell Kit (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
GC/MS Agilent MSD5977B (1)
Instrument (1)
Q-Exactive HF-X (1)
Orbitrap Ascend (1)
TripleTOF 5600 (1)
TimsTOF (1)
TimsTOF SCP (1)
6520B Q-TOF LC/MS (1)
Orbitrap Exploris 240 (1)

Publication Date

2025 (85)
2022 (81)
2024 (76)
2023 (62)
2021 (58)
2026 (37)
2019 (30)
2013 (27)
2014 (26)
2020 (22)
2015 (22)
2012 (20)
2016 (18)
2010 (17)
2018 (17)
2009 (16)
2017 (15)
2011 (13)
2007 (2)
2005 (1)
2008 (1)
2006 (1)

UNIPROT ID/AC

RNK_ECOLI (1)
FUCK_ECOLI (1)
CDAR_ECOLI (1)
YGHG_ECOLI (1)
YDJI_ECOLI (1)
PHNN_ECOLI (1)
NARG_ECOLI (1)
NFRB_ECOLI (1)
RUTA_ECOLI (1)
PHNJ_ECOLI (1)
YTFE_ECOLI (1)
UACT_ECOLI (1)
HTRE_ECOLI (1)
SPRT_ECOLI (1)
YCCT_ECOLI (1)
ARAB_ECOLI (1)
FPG_ECOLI (1)
RUTC_ECOLI (1)
SULA_ECOLI (1)
SSUB_ECOLI (1)
HOFB_ECOLI (1)
PINR_ECOLI (1)
HSCC_ECOLI (1)
HYPC_ECOLI (1)
YDIB_ECOLI (1)
YNBC_ECOLI (1)
YPHE_ECOLI (1)
GRE1_ECOLI (1)
PHND_ECOLI (1)
NIKD_ECOLI (1)

ENSEMBL ID

ENSG00000247315 (2)
ENSG00000147251 (2)
ENSG00000170477 (2)

CHEBI ID

CHEBI:30769 (20)
CHEBI:17895 (19)
CHEBI:17154 (18)
CHEBI:16704 (18)
CHEBI:16750 (18)
CHEBI:17368 (18)
CHEBI:48131 (17)
CHEBI:17568 (17)
CHEBI:16015 (17)
CHEBI:17509 (16)
CHEBI:55328 (16)
CHEBI:16467 (16)
CHEBI:17295 (16)
CHEBI:15756 (16)
CHEBI:9300 (15)
CHEBI:17203 (15)
CHEBI:15971 (15)
CHEBI:17596 (15)
CHEBI:16411 (14)
CHEBI:16235 (14)
CHEBI:16040 (14)
CHEBI:16708 (14)
CHEBI:16857 (14)
CHEBI:18050 (14)
CHEBI:15354 (14)
CHEBI:17351 (14)
CHEBI:30805 (14)
CHEBI:18132 (13)
CHEBI:30915 (13)
CHEBI:15843 (13)

Metabolite Name

Guanosine (14)
Hypoxanthine (13)
Inosine (13)
Uridine (13)
Guanine (12)
Uracil (12)
Azelaic acid (12)
L-Arginine (10)
Taurine (10)
Suberic acid (10)
Citric acid (10)
Choline (9)
Uric acid (9)
Cytidine (9)
Xanthine (9)
L-Proline (8)
Nicotinamide (8)
L-Tyrosine (8)
Adenosine (8)
Proline (8)
Phenylalanine (8)
L-Tryptophan (8)
Creatine (8)
Adenine (8)
Phenylacetaldehyde (8)
Dodecanedioic acid (8)
L-Phenylalanine (8)
Palmitic acid (8)
Thymidine (8)
Valine (7)

First Public Date

2014 (2)
2022 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Third Military Medical University (5)
Affiliated Eye Hospital of Shandong University of Traditional Chinese Medicine (5)
Tsinghua University, China (4)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
Shandong Normal University (3)
Zhejiang University (3)
State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China. (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
Department of Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (2)
Xiangya Hospital, Central South University (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang Province, China (2)
Tianjin Medical University General Hospital (2)
School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou, 510006, Guangdong, P.R. China. (2)
State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, China (2)
South China Agricultural University (2)
Wuhan University School of Basic Medical Sciences (2)
Dept. of Laboratory Medicine University of California, San Francisco, USA (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Westlake University (2)
Institute of Animal Sciences, Chinese Academy of Agricultural Sciences (2)
Institute of Biophysics, Chinese Academy of Sciences (2)
Huazhong University of Science and Technology (2)
School of Pharmacy, University of Wisconsin-Madison (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
St Jude Children's Research Hospital (2)
westlake.edu.cn (2)
St. Jude Children's Research Hospital (2)
Pacific Northwest National Laboratory (2)
Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)

IsPrivate

False (1)

Modification

15.994915 (1)
6x(2)H labeled dimethylated L-arginine (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (58)
RNA-seq of coding RNA (35)
ChIP-seq (15)
Methylation profiling by high throughput sequencing (9)
RNA-seq of non coding RNA (5)
Comparative genomic hybridization by array (4)
MicroRNA profiling by array (4)
Unknown experiment type (3)
Genotyping by array (3)
ChIP-chip by tiling array (2)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (4187)
2022 (3522)
2023 (3347)
2024 (3311)
2021 (2699)
2020 (1985)
2019 (1329)
2018 (1025)
2017 (963)
2016 (750)
2015 (631)
2026 (576)
2014 (487)
2013 (278)
2012 (201)
2011 (158)
2010 (125)
2009 (120)
2008 (54)
2007 (38)
2005 (19)
2006 (16)
2004 (15)
2003 (9)
2002 (4)
2001 (4)
1997 (3)
1999 (2)
2000 (1)
1998 (1)

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The tyrosine phosphatase SHP-2 dephosphorylated by ALV-J via its Env efficiently promotes ALV-J replication.

Not available

S-EPMC8237968 | biostudies-literature

Differential DNA Methylation and Gene Expression Between ALV-J-Positive and ALV-J-Negative Chickens.

Not available

S-EPMC8203102 | biostudies-literature

Distinctive microRNA profiles and target genes of aberrant microRNAs in leukemia chicken infected by subgroup J avian leukosis virus

Subgroup J avian leukemia is a type of oncology infectious disease caused by Subtype J of avian leukosis virus (ALV-J). It mainly encroaches on bone marrow cells, and metastasizes to liver, kidney, splenic ellipsoids and other organs, leading to myeloid leukosis (ML) and other malignancies, resultin...

ORGANISM(S): Gallus gallus

2014-03-10 | E-GEOD-28434 | biostudies-arrayexpress

Semen extracellular vesicles mediate vertical transmission of subgroup J avian leukosis virus.

Not available

S-EPMC9170978 | biostudies-literature

A balanced game: chicken macrophage response to ALV-J infection.

Not available

S-EPMC6404279 | biostudies-literature

Gp37 Regulates the Pathogenesis of Avian Leukosis Virus Subgroup J via Its C Terminus.

Not available

S-EPMC7269434 | biostudies-literature

LncIRF1 promotes chicken resistance to ALV-J infection.