Xie Xie X - OmicsDI

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Unknown (23209)
Proteomics (511)
Transcriptomics (162)
Genomics (78)
Metabolomics (75)
Other (3)

Organisms

Homo sapiens (189)
Mus musculus (109)
Arabidopsis thaliana (8)
Rattus norvegicus (7)
Drosophila melanogaster (6)
Oryza sativa (6)
synthetic construct (5)
Macaca mulatta (3)
Ovis aries (3)
Bemisia tabaci (2)
Zea mays (2)
Bos taurus (2)
Oryza sativa Japonica Group (2)
Sus scrofa (2)
Capra hircus (2)
Iridovirus (1)
Epinephelus coioides (1)
Larimichthys crocea (1)
Pinctada fucata (1)
Plutella xylostella (1)
Volvariella volvacea (1)
Rhodococcus opacus (1)
Oryza rufipogon (1)
Vitis labrusca x Vitis vinifera (1)
Sclerotinia sclerotiorum (1)
Taenia multiceps (1)
Herpesvirus saimiri (strain 11) (1)
Tomato yellow leaf curl China virus (1)
Metarhizium acridum (1)
Youcai mosaic virus (1)

Organisms

Mus musculus (2)
synthetic construct (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Repository

pride (317)
biostudies-arrayexpress (185)
iProX (164)
MetaboLights (72)
EGA (42)
MassIVE (24)
NODE (8)
ENA (7)
geo (3)
GNPS (3)
PanoramaPublic (2)
jPOST (1)
PAXDB (1)

Tissue

Cell culture (75)
Epithelial cell (25)
Brain (18)
Liver (18)
Testis (15)
Permanent cell line cell (12)
Leaf (12)
Kidney (11)
Lung (10)
Hepatocyte (10)
Bone marrow (9)
Blood serum (9)
Cell line (8)
Plant cell (8)
Heart (8)
Root (6)
Cell suspension culture (6)
Spleen (6)
Blood plasma (6)
Whole body (6)
Colon (5)
Smooth muscle cell (4)
HeLa cell (4)
Fibroblast (4)
Skin (4)
Retina (4)
Embryonic stem cell (4)
Neutrophil (3)
Malignant cell (3)
Oocyte (3)

Disease

Disease free (13)
Breast cancer (9)
Hepatocellular carcinoma (5)
Prostate adenocarcinoma (4)
Cervix carcinoma (4)
Brain cancer (4)
Alzheimer's disease (3)
Colon cancer (3)
Primary immunodeficiency disease (2)
Osteoporosis (2)
Liver cancer (2)
Rheumatoid arthritis (2)
Cardiovascular system disease (2)
Cholangiocarcinoma (2)
Type 2 diabetes mellitus (2)
VSV infection (1)
Neuropathic pain (1)
Stage IV colorectal cancer (1)
Esophageal disease (1)
Residual chronic schizophrenia (1)
Dermatofibrosarcoma protuberans (1)
Acute kidney failure (1)
Ischemic stroke (1)
Hemorrhagic stroke (1)
Esophagus adenocarcinoma (1)
Antenatal onset (1)
Hydronephrosis (1)
Uveal melanoma (1)
Carcinoma (1)
Thyroid cancer (1)

Technology Type

Mass Spectrometry (317)
Shotgun proteomics (147)
Mass spectrometry (61)
Bottom-up proteomics (58)
Affinity purification coupled with mass spectrometry proteomics (33)
Gel-based experiment (25)
Data-dependent acquisition (22)
Top-down proteomics (18)
Data-independent acquisition (16)
Mass spectrometry assay (11)
SRM/MRM (6)
SWATH MS (6)
All-ion fragmentation (4)
Proteogenomics (3)
MSE (3)
Affinity proteomics (2)
Mass spectrometry imaging (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Olink affinity proteomics (1)
DiaPASEF (1)
Immunopeptidomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (31)
Liquid Chromatography MS - positive - reverse phase (30)
Orbitrap Fusion Lumos (7)
Liquid Chromatography MS - negative - hilic (6)
Illumina HiSeq 2500 (5)
Q Exactive (5)
Illumina NovaSeq 6000 (3)
LTQ Orbitrap Velos (3)
Illumina HiSeq 2000 (2)
Orbitrap Exploris 480 (2)
Q Exactive Plus (2)
BD FACSAria™ III (1)
10X genomics Chromium X (1)
BD FACSAriaII cell sorter (1)
Agilent 2100 bioanalyzer (1)
NanoDrop ND-1000 (1)
Affymetrix Genechip Command Console software (1)
Trizol Reagent (1)
HiSeq X Ten (1)
NextSeq 500 (1)
GC/MS Agilent MSD5977B (1)
Q-Exactive HF-X (1)
Orbitrap Ascend (1)
ZenoTOF 7600 (1)
TripleTOF 5600 (1)
TimsTOF (1)
Q Exactive HF-X (1)
Q Exactive HF (1)
TimsTOF SCP (1)
Orbitrap Exploris 240 (1)

Publication Date

2025 (107)
2024 (103)
2022 (93)
2023 (67)
2026 (56)
2021 (56)
2020 (38)
2014 (36)
2012 (28)
2019 (27)
2016 (25)
2013 (21)
2015 (20)
2017 (19)
2011 (19)
2010 (17)
2009 (17)
2018 (15)
2008 (4)
2007 (1)
2006 (1)

UNIPROT ID/AC

RNK_ECOLI (1)
PHNK_ECOLI (1)
XDHA_ECOLI (1)
FUCK_ECOLI (1)
CDAR_ECOLI (1)
SCPC_ECOLI (1)
YGHG_ECOLI (1)
YDJI_ECOLI (1)
MLTD_ECOLI (1)
YIAV_ECOLI (1)
PHNN_ECOLI (1)
ARPA_ECOLI (1)
FIME_ECOLI (1)
ARFB_ECOLI (1)
YGCE_ECOLI (1)
NARG_ECOLI (1)
NFRB_ECOLI (1)
RUTA_ECOLI (1)
PHNJ_ECOLI (1)
PHYDA_ECOLI (1)
YFJK_ECOLI (1)
YTFE_ECOLI (1)
NIKC_ECOLI (1)
YDHW_ECOLI (1)
HYCE_ECOLI (1)
UACT_ECOLI (1)
YGFT_ECOLI (1)
BGLG_ECOLI (1)
RAYT_ECOLI (1)
ABGB_ECOLI (1)

CHEBI ID

CHEBI:30769 (24)
CHEBI:16704 (24)
CHEBI:17368 (24)
CHEBI:17895 (23)
CHEBI:16750 (23)
CHEBI:17154 (22)
CHEBI:17568 (22)
CHEBI:48131 (21)
CHEBI:17596 (21)
CHEBI:17295 (20)
CHEBI:16015 (20)
CHEBI:16040 (20)
CHEBI:16235 (20)
CHEBI:16708 (20)
CHEBI:15971 (18)
CHEBI:16411 (18)
CHEBI:17509 (18)
CHEBI:17203 (18)
CHEBI:55328 (18)
CHEBI:15756 (18)
CHEBI:30915 (18)
CHEBI:15354 (17)
CHEBI:9300 (17)
CHEBI:18050 (17)
CHEBI:16737 (17)
CHEBI:17562 (17)
CHEBI:16467 (17)
CHEBI:7916 (17)
CHEBI:16919 (17)
CHEBI:18089 (17)

Metabolite Name

Guanosine (18)
Inosine (18)
Hypoxanthine (17)
Uridine (16)
Guanine (16)
Uracil (15)
Taurine (15)
Azelaic acid (14)
L-Phenylalanine (14)
Adenine (13)
L-Tyrosine (13)
Xanthosine (12)
Citric acid (12)
Suberic acid (12)
Cytidine (12)
Creatine (12)
L-Tryptophan (11)
Uric acid (11)
L-Serine (11)
Riboflavin (11)
Porphobilinogen (11)
L-Arginine (11)
Cytosine (11)
Choline (11)
L-Proline (11)
L-Histidine (10)
Thymidine (10)
Palmitic acid (10)
Glycerophosphocholine (10)
L-Glutamine (10)

First Public Date

2020 (3)
2026 (1)
2024 (1)
2014 (1)
2013 (1)

Classification

bacteria (1)

Modification

Not available (2)
15.994915 (1)
6x(2)H labeled dimethylated L-arginine (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (86)
RNA-seq of coding RNA (37)
ChIP-seq (16)
RNA-seq of non coding RNA (12)
Methylation profiling by high throughput sequencing (11)
Unknown experiment type (4)
ChIP-chip by tiling array (4)
MicroRNA profiling by array (3)
Proteomic profiling by array (2)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2025 (3920)
2022 (3303)
2023 (3018)
2024 (2989)
2021 (2427)
2020 (1695)
2019 (1195)
2018 (982)
2017 (881)
2016 (652)
2015 (546)
2026 (539)
2014 (420)
2013 (251)
2012 (175)
2011 (134)
2010 (90)
2009 (79)
2008 (32)
2007 (24)
2006 (16)
2005 (10)
2004 (8)
2001 (4)
2003 (3)
2000 (1)

Lab affiliation

Affiliated Eye Hospital of Shandong University of Traditional Chinese Medicine (5)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
Shandong Normal University (3)
State Key Laboratory for Development and Utilization of Forest Food Resources, Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China (3)
Memorial Sloan Kettering Cancer Center (3)
State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China. (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China ( lab head ) (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
Faculty of Pharmacy, Hubei University of Chinese Medicine (2)
Key Laboratory for Experimental Teratology of the Ministry of Education, Advanced Medical Research Institute, Qilu Hospital, Cheeloo College of Medicine, Shandong University (2)
Xiangya Hospital, Central South University (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang Province, China (2)
Tianjin Medical University General Hospital (2)
School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou, 510006, Guangdong, P.R. China. (2)
South China Agricultural University (2)
Department of Biochemistry and Molecular Biology, Capital Medical University, Beijing, 100069, China (2)
School of Life Sciences, Tsinghua University, China (2)
Southwest University (2)
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill,NC 27599,USA (2)
School of Laboratory Medicine and Biotechnology, Southern Medical University (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Institute of Biophysics, Chinese Academy of Sciences (2)
Huazhong University of Science and Technology (2)
Xiamen University (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
St. Jude Children's Research Hospital (2)
St Jude Children's Research Hospital (2)
westlake.edu.cn (2)
Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)

Tags

xref:PubMed:17913887 (1)
xref:PubMed:22232676 (1)
pathogen (1)
pathogen:bacterium (1)

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Chinese herbal medicine Jia Wei Jing Xie Yin (JWJXY) ameliorates psoriasis via suppressing the Th17 cell response.

Not available

S-EPMC9011239 | biostudies-literature

Four new coelotine species (Araneae, Agelenidae, Coelotinae) from South China, with the first description of the male of Coelotes septus Wang, Yin, Peng & Xie, 1990.

Not available

S-EPMC8050011 | biostudies-literature

A Network Pharmacology Approach to Uncover the Molecular Mechanisms of Herbal Formula Ban-Xia-Xie-Xin-Tang.

Not available

S-EPMC6206573 | biostudies-literature

Cloning and Functional Characterization of Two Germacrene A Oxidases Isolated from Xanthium sibiricum.

Not available

S-EPMC9145264 | biostudies-literature

DNA damage repair gene expression profiles in cervical cancer cells radioresistant to 252Cf neutron and X-rays

[original title] Microarray analysis of DNA damage repair gene expression profiles in cervical cancer cells radioresistant to 252Cf neutron and X-rays. The aim of the study was to obtain stable radioresistant sub-lines from the human cervical cancer cell line HeLa by prolonged exposure to 252Cf neu...

ORGANISM(S): Homo sapiens

2010-05-17 | E-GEOD-19526 | biostudies-arrayexpress

High-κ van der Waals Oxide MoO₃ as Efficient Gate Dielectric for MoS₂ Field-Effect Transistors.

Not available

S-EPMC9457482 | biostudies-literature

Identification of Molecular Subtypes and Prognostic Characteristics of Adrenocortical Carcinoma Based on Unsupervised Clustering.

Not available

S-EPMC10607826 | biostudies-literature

Shu-Xie decoction alleviates oxidative stress and colon injury in acute sleep-deprived mice by suppressing p62/KEAP1/NRF2/HO1/NQO1 signaling.

Not available

S-EPMC9939528 | biostudies-literature

Retracted article: Functional analysis of ceRNA network of lncRNA TSIX/miR-34a-5p/RBP2 in acute myocardial infarction based on GEO database.

Not available

S-EPMC10841007 | biostudies-literature

Regulation of nitrous oxide production in low oxygen waters off the coast of Peru

This SuperSeries is composed of the SubSeries listed below. [SUBMITTER_CITATION]: Frey, C., Bange, H. W., Achterberg, E. P., Jayakumar, A., Löscher, C. R., Arévalo-Martínez, D. L., León-Palmero, E., Sun, M., Sun, X., Xie, R. C., Oleynik, S., and Ward, B. B.: Regulation of nitrous oxide production in...

ORGANISM(S): seawater metagenome synthetic construct Archaea

2020-01-07 | GSE142806 | GEO

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24038 Results

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