Xie Xu X - OmicsDI

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Unknown (4886)
Proteomics (146)
Metabolomics (24)
Transcriptomics (23)
Genomics (14)

Organisms

Homo sapiens (96)
Mus musculus (42)
Arabidopsis thaliana (5)
Cavia porcellus (4)
Oryza sativa (3)
Ovis aries (3)
Oryctolagus cuniculus (3)
Capra hircus (2)
Macaca fascicularis fascicularis (2)
Escherichia coli (2)
Rhodococcus opacus (1)
Bemisia tabaci (1)
Clonorchis sinensis (1)
Oryza sativa Indica Group (1)
Setaria italica (1)
Drosophila melanogaster (1)
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
Epinephelus fuscoguttatus x Epinephelus lanceolatus (1)
Paenibacillus polymyxa (1)
Rattus rattus (1)
Schistosoma mansoni (1)
Solanum lycopersicum (1)
Camelina sativa (1)
Camellia nitidissima (1)
Fusobacterium nucleatum CTI-1 (1)
Mycobacterium tuberculosis H37Rv (1)
Ruegeria sp. JZ08IS16 (1)
Saccharomyces cerevisiae (1)
Spinacia oleracea (1)
Triticum aestivum (1)

Organisms

synthetic construct (1)

Repository

pride (79)
iProX (59)
biostudies-arrayexpress (30)
MetaboLights (24)
MassIVE (8)
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Tissue

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HEK-293T cell (1)
HeLa cell (1)

Disease

Hepatocellular carcinoma (4)
Brain cancer (2)
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Disease free (2)
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VSV infection (1)
Alzheimer's disease (1)
Brain glioblastoma multiforme (1)
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Gastric adenocarcinoma (1)
Myeloproliferative neoplasm (1)
Myopia (1)
Neuropathic pain (1)
Severe acute respiratory syndrome (1)
Stage IV colorectal cancer (1)
Thyroid cancer (1)

Technology Type

Mass Spectrometry (79)
Shotgun proteomics (36)
Mass spectrometry (24)
Bottom-up proteomics (18)
Gel-based experiment (8)
Affinity purification coupled with mass spectrometry proteomics (7)
Data-dependent acquisition (5)
Data-independent acquisition (5)
Top-down proteomics (4)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Affinity proteomics (1)
MSE (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (11)
Liquid Chromatography MS - negative - reverse phase (9)
Orbitrap Fusion Lumos (4)
LTQ Orbitrap Velos (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
6540 Q-TOF LC/MS (Agilent) (2)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Q Exactive HF-X (1)
Capillary electrophoresis MS - negative (1)
Capillary electrophoresis MS - positive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating – hilic (1)
Xevo G2 QTOF (Waters) (1)
Xevo QTof MS (Waters) (1)

Publication Date

2025 (35)
2024 (31)
2023 (26)
2022 (26)
2026 (16)
2021 (16)
2015 (10)
2019 (7)
2016 (6)
2012 (6)
2014 (5)
2018 (5)
2017 (3)
2013 (3)
2020 (2)
2010 (1)
2009 (1)
2006 (1)

CHEBI ID

CHEBI:17368 (11)
CHEBI:17568 (11)
CHEBI:17596 (11)
CHEBI:17895 (11)
CHEBI:16040 (10)
CHEBI:16704 (10)
CHEBI:16750 (10)
CHEBI:17154 (10)
CHEBI:55328 (10)
CHEBI:16235 (9)
CHEBI:16708 (9)
CHEBI:17295 (9)
CHEBI:17748 (9)
CHEBI:18132 (9)
CHEBI:28716 (9)
CHEBI:15354 (8)
CHEBI:16027 (8)
CHEBI:16335 (8)
CHEBI:16347 (8)
CHEBI:16610 (8)
CHEBI:16737 (8)
CHEBI:16870 (8)
CHEBI:16914 (8)
CHEBI:16919 (8)
CHEBI:27823 (8)
CHEBI:30769 (8)
CHEBI:48131 (8)
CHEBI:15727 (7)
CHEBI:15756 (7)
CHEBI:15843 (7)

Metabolite Name

Inosine (8)
L-Phenylalanine (8)
L-Tyrosine (8)
Uracil (8)
Creatine (6)
Cytosine (6)
Guanine (6)
Hypoxanthine (6)
Nicotinamide (6)
Spermidine (6)
Valine (6)
Adenosine (5)
Asparagine (5)
Choline (5)
Guanosine (5)
L-Tryptophan (5)
Proline (5)
Riboflavin (5)
1-Methylhistidine (4)
Acetylcholine (4)
Azelaic acid (4)
Chrysin (4)
Coumarin (4)
Creatinine (4)
Indole (4)
Isoleucine (4)
Isoxanthopterin (4)
L-Arginine (4)
L-Citrulline (4)
L-Histidine (4)

First Public Date

2024 (1)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA (9)
ChIP-seq (5)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (822)
2022 (695)
2023 (666)
2024 (655)
2021 (516)
2020 (365)
2019 (236)
2017 (200)
2018 (171)
2016 (142)
2026 (129)
2015 (125)
2014 (75)
2013 (36)
2012 (34)
2011 (18)
2010 (12)
2009 (7)
2006 (5)
2008 (2)
2007 (2)
2005 (2)
2000 (1)

Lab affiliation

Affiliated Eye Hospital of Shandong University of Traditional Chinese Medicine (5)
Key Laboratory for Experimental Teratology of the Ministry of Education, Advanced Medical Research Institute, Qilu Hospital, Cheeloo College of Medicine, Shandong University (2)
School of Life Sciences, Tsinghua University, China (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China ( lab head ) (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China. (2)
westlake.edu.cn (2)
1 Department of Emergency, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
BGI-Shenzhen (1)
Beijing Institute of Genomics, Chinese Academy of Sciences (1)
Carnegie Mass Spectrometry Facility (1)
Center for Regeneration and Aging,BGI-haangzhou (1)
Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing, China. (1)
China State Institute of Pharmaceutical Industry (1)
College of Architecture and Urban Planning, Fujian University of Technology (1)
Department of Cell Biology, and Institute of Gastroenterology of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China (1)
Department of Cellular and Genetic Medicine, School of Basic Medical Sciences, Fudan University, Shanghai (1)
Department of Endocrinology, Endocrinology Research Center, Xiangya Hospital of Central South University (1)
Department of Laboratory Medicine, Shengjing Hospital of China Medical University, Shenyang, China. (1)
Department of Medicine, Columbia University Irving Medical Center (1)
Department of Pathology, Dana-Farber/Harvard Cancer Center, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA. (1)
Department of Pediatric Pulmonology and Immunology, West China Second University Hospital, Sichuan University, Chengdu, China (1)
Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China (1)
Director, Simon F.S. Li Marine Science Laboratory, CUHK, Hong Kong Associate Professor, School of Life Sciences, CUHK, Hong Kong (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Fujian Provincial Key Laboratory of Plant Functional Biology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (1)
Guangxi University,China (1)
Harold C. Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, TX, USA (1)

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The subfamily Xerocomoideae (Boletaceae, Boletales) in China.

Not available

S-EPMC10825750 | biostudies-literature

Four new coelotine species (Araneae, Agelenidae, Coelotinae) from South China, with the first description of the male of Coelotes septus Wang, Yin, Peng & Xie, 1990.

Not available

S-EPMC8050011 | biostudies-literature

A Network Pharmacology Approach to Uncover the Molecular Mechanisms of Herbal Formula Ban-Xia-Xie-Xin-Tang.

Not available

S-EPMC6206573 | biostudies-literature

Effect of insulin resistance on ticagrelor-versus clopidogrel-based dual antiplatelet therapy for secondary prevention of stroke in carriers of <i>CYP2C19</i> loss-of-function mutations.

Not available

S-EPMC12826683 | biostudies-literature

Angiotensin II increases angiogenesis by NF-κB-mediated transcriptional activation of angiogenic factor AGGF1.

Not available

S-EPMC6103173 | biostudies-literature

Heterochromatin remodeling by CDK12 contributes to learning in Drosophila

We describe the epigenetic profiling of the H3K9me2 and HP1a in Drosophila third instar larvae before and after CDK12 depletion by RNA interference (RNAi). Here we show that CDK12 regulates heterochromatin dynamics in Drosophila chromosomes. Depletion of CDK12 induces the increased HP1a and H3K9me2 ...

ORGANISM(S): Drosophila melanogaster

2015-11-02 | E-GEOD-63011 | biostudies-arrayexpress

TELP, a sensitive and versatile library construction method for next-generation sequencing

Next-generation sequencing has been widely used for the genome-wide profiling of histone modifications, transcription factor binding and gene expression through chromatin immunoprecipitated DNA sequencing (ChIP-seq) and cDNA sequencing (RNA-seq). Here, we describe a versatile library construction me...

ORGANISM(S): Mus musculus

2015-12-15 | E-GEOD-75966 | biostudies-arrayexpress

Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

Indoleamine 2,3-Dioxygenase 1 Deletion-Mediated Kynurenine Insufficiency in Vascular Smooth Muscle Cells Exacerbates Arterial Calcification.

Not available

S-EPMC9197997 | biostudies-literature

Gene expression profiles of Liuwei Dihuang Pill treatment postmenopausal osteoporosis with kidney Yin deficiency

Investigate gene expression profiles of Liuwei Dihuang Pill treatment postmenopausal osteoporosis with kidney Yin deficiency in peripheral blood Liuwei Dihuang Pill (LDP), a classic Chinese medicinal formula, has been used to treat PMO with kidney YIN deficiency for three months. Whole human genome ...

ORGANISM(S): Homo sapiens

2014-05-06 | E-GEOD-57273 | biostudies-arrayexpress

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