Xie Yang Y - OmicsDI

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Unknown (6949)
Proteomics (158)
Transcriptomics (32)
Metabolomics (25)
Genomics (7)
Models (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (85)
Homo sapiens (61)
Mus musculus (29)
Oryctolagus cuniculus (3)
Ovis aries (2)
Escherichia coli (2)
Macaca fascicularis fascicularis (2)
Syntrophus aciditrophicus SB (2)
Rhodococcus opacus (1)
Oryza rufipogon (1)
Taenia multiceps (1)
Tomato yellow leaf curl China virus (1)
Capra hircus (1)
Bemisia tabaci (1)
Dirofilaria immitis (1)
Macaca mulatta (1)
Oryza sativa Indica Group (1)
Setaria italica (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Aeromonas hydrophila HS01 (1)
Cordyceps militaris CM01 (1)
Cucurbita ficifolia (1)
Epinephelus fuscoguttatus x Epinephelus lanceolatus (1)
Mycolicibacterium smegmatis MC2 51 (1)
Parabacteroides distasonis ATCC 8503 (1)
Saccharomyces cerevisiae (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Solanum lycopersicum (1)
Oryza sativa (1)

Repository

pride (85)
iProX (70)
biostudies-arrayexpress (34)
MetaboLights (25)
EGA (5)
jPOST (3)
BioModels (1)

Tissue

Cell culture (24)
Brain (7)
Epithelial cell (7)
Liver (6)
Hepatocyte (5)
Leaf (5)
Bone marrow (4)
Permanent cell line cell (4)
Blood plasma (3)
Cell suspension culture (3)
Plant cell (3)
Testis (3)
Embryonic stem cell (2)
Gastric adenocarcinoma cell (2)
HeLa cell (2)
Heart (2)
Kidney (2)
Lung (2)
Macrophage (2)
Blood cell (1)
Blood serum (1)
Breast (1)
Breast cancer cell line (1)
Colon (1)
Corolla (1)
Flower (1)
HEK-293T cell (1)
Intestine (1)
JURKAT cell (1)
Megakaryocyte (1)

Disease

Disease free (3)
Alzheimer's disease (2)
Brain cancer (2)
Brain glioblastoma multiforme (2)
Breast cancer (2)
Hepatocellular carcinoma (2)
Liver cancer (2)
Primary immunodeficiency disease (2)
Type 2 diabetes mellitus (2)
Carcinoma (1)
Cardiovascular system disease (1)
Cerebrovascular disease (1)
Dermatofibrosarcoma protuberans (1)
Gastric adenocarcinoma (1)
Head and neck squamous cell carcinoma (1)
Lung cancer (1)
Myeloproliferative neoplasm (1)
Neuropathic pain (1)
Osteoporosis (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (85)
Shotgun proteomics (42)
Mass spectrometry (25)
Bottom-up proteomics (15)
Gel-based experiment (9)
Affinity purification coupled with mass spectrometry proteomics (8)
Data-dependent acquisition (8)
Data-independent acquisition (4)
Top-down proteomics (4)
MSE (3)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Immunopeptidomics (1)
Proteogenomics (1)
RNA mass spectrometry (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (11)
Liquid Chromatography MS - positive - reverse phase (10)
6540 Q-TOF LC/MS (Agilent) (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
Illumina HiSeq 2500 (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Capillary electrophoresis MS - negative (1)
Capillary electrophoresis MS - positive (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
5975C Series GC/MSD (Agilent) (1)
Xevo G2 QTOF (Waters) (1)
Liquid Chromatography MS - (1)
Xevo QTof MS (Waters) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2024 (43)
2022 (29)
2025 (28)
2023 (27)
2021 (16)
2026 (12)
2013 (10)
2019 (10)
2016 (7)
2015 (6)
2012 (5)
2020 (5)
2018 (5)
2017 (4)
2014 (4)
2010 (4)
2005 (1)
2011 (1)
2006 (1)

CHEBI ID

CHEBI:16750 (13)
CHEBI:16704 (11)
CHEBI:17895 (11)
CHEBI:17368 (11)
CHEBI:30769 (11)
CHEBI:48131 (10)
CHEBI:16040 (10)
CHEBI:30915 (10)
CHEBI:17154 (10)
CHEBI:17596 (10)
CHEBI:17351 (10)
CHEBI:17748 (9)
CHEBI:16196 (9)
CHEBI:16865 (9)
CHEBI:17203 (9)
CHEBI:16235 (9)
CHEBI:16027 (9)
CHEBI:16335 (9)
CHEBI:16919 (9)
CHEBI:17295 (9)
CHEBI:17687 (9)
CHEBI:16525 (8)
CHEBI:15676 (8)
CHEBI:16708 (8)
CHEBI:16393 (8)
CHEBI:55328 (8)
CHEBI:16359 (8)
CHEBI:18132 (8)
CHEBI:17509 (8)
CHEBI:15971 (8)

Metabolite Name

Guanosine (7)
Nicotinamide (6)
Ornithine (5)
Adenosine (5)
Guanine (5)
Cytosine (5)
Threonine (5)
Creatine (5)
Hypoxanthine (5)
Leucine (4)
AMP (4)
Uracil (4)
Valine (4)
Corticosterone (4)
Betaine (4)
2-Methylbutyroylcarnitine (4)
Choline (4)
Cholic acid (4)
Pipecolic acid (4)
Asparagine (4)
Serine (4)
Riboflavin (4)
Proline (4)
Glutamine (4)
Azelaic acid (4)
Thymidine (4)
Uridine (4)
Glycerophosphocholine (4)
L-Tyrosine (4)
L-Phenylalanine (4)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (10)
RNA-seq of coding RNA (9)
RNA-seq of non coding RNA (4)
Comparative genomic hybridization by array (3)
Genotyping by array (2)
Transcription profiling by RT-PCR (2)
Unknown experiment type (1)
Other (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (1201)
2024 (978)
2022 (964)
2023 (946)
2021 (702)
2020 (526)
2019 (336)
2018 (259)
2017 (257)
2016 (181)
2026 (168)
2015 (163)
2014 (108)
2013 (85)
2012 (37)
2011 (29)
2010 (20)
2009 (8)
2008 (5)
2005 (3)
2004 (3)
2006 (2)
2007 (1)
2001 (1)

Lab affiliation

Key Laboratory for Experimental Teratology of the Ministry of Education, Advanced Medical Research Institute, Qilu Hospital, Cheeloo College of Medicine, Shandong University (2)
Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)
School of Life Sciences, Tsinghua University, China (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
St Jude Children's Research Hospital (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
westlake.edu.cn (2)
, Dana-Farber Cancer Institute, Harvard Medical School 360 Longwood Avenue Longwood Center, LC4117 Boston, MA 02215 (1)
1 Department of Emergency, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (1)
1 Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2 University of Chinese Academy of Sciences, Beijing 100049, China (1)
1Department of Hematology, Xiangya Hospital, Central South University, Changsha 410080, China 2NHC Key Laboratory of Carcinogenesis, Department of Microbiology, School of Basic Medical Science, Central South University, Changsha 410078, China (1)
BGI-Shenzhen (1)
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China (1)
Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, Zhejiang 310052, China (1)
China Agricultural University (1)
China agricultural university (1)
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill,NC 27599,USA (1)
Department of Cell Biology, and Institute of Gastroenterology of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China (1)
Department of Cellular and Genetic Medicine, School of Basic Medical Sciences, Fudan University, Shanghai (1)
Department of Endocrinology, Endocrinology Research Center, Xiangya Hospital of Central South University, 87# Xiangya Road, Changsha, Hunan 410008, PR China (1)
Department of Medicine, Columbia University Irving Medical Center (1)
Department of Oncological Sciences, Department of Dermatology, The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai (1)
Department of Pediatric Pulmonology and Immunology, West China Second University Hospital, Sichuan University, Chengdu, China (1)
Division of Endocrinology, Department of Internal Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China. (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Medical research center, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China 510120. (1)
Guangzhou Medical University (1)
Henan University of Technology (1)
Institute of Biophysics, Chinese Academy of Sciences (1)
Institute of Environmental Horticulture, Guangdong Academy of Agricultural Sciences (1)

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Chinese herbal medicine Jia Wei Jing Xie Yin (JWJXY) ameliorates psoriasis via suppressing the Th17 cell response.

Not available

S-EPMC9011239 | biostudies-literature

Integrated Strategy of Network Pharmacological Prediction and Experimental Validation Elucidate Possible Mechanism of Bu-Yang Herbs in Treating Postmenopausal Osteoporosis via ESR1.

Not available

S-EPMC8144472 | biostudies-literature

The subfamily Xerocomoideae (Boletaceae, Boletales) in China.

Not available

S-EPMC10825750 | biostudies-literature

Mahajan2008_CardiacActionPotential_Arrhythmias

This a model from the article: A rabbit ventricular action potential model replicating cardiac dynamics at rapid heart rates. Mahajan A, Shiferaw Y, Sato D, Baher A, Olcese R, Xie LH, Yang MJ, Chen PS, Restrepo JG, Karma A, Garfinkel A, Qu Z, Weiss JN. Biophys J...

2005-01-01 | MODEL1006230048 | BioModels

Efficacy of Compound Herbal Medicine Tong-Xie-Yao-Fang for Acute Radiation Enteritis and Its Potential Mechanisms: Evidence from Transcriptome Analysis.

Not available

S-EPMC7725573 | biostudies-literature

Expression of Yin Yang 1 in cervical cancer and its correlation with E-cadherin expression and HPV16 E6.

Not available

S-EPMC5823405 | biostudies-literature

A1CF Binding to the p65 Interaction Site on NKRF Decreased IFN-β Expression and p65 Phosphorylation (Ser536) in Renal Carcinoma Cells.

Not available

S-EPMC11011687 | biostudies-literature

Complete chloroplast genome of Sinosenecio jishouensis D.G. Zhang, Ying Liu & Q. E. Yang (Asteraceae), a narrow endemic species in Wuling Mountain Region, China.

Not available

S-EPMC7995908 | biostudies-literature

Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

Effect of insulin resistance on ticagrelor-versus clopidogrel-based dual antiplatelet therapy for secondary prevention of stroke in carriers of <i>CYP2C19</i> loss-of-function mutations.

Not available

S-EPMC12826683 | biostudies-literature

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7172 Results

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