Xu He H - OmicsDI

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Unknown (6615)
Proteomics (170)
Transcriptomics (44)
Genomics (29)
Metabolomics (29)
Models (4)
Multiomics (3)

Organisms

Allexis (95)
Arabidopsis thaliana (95)
Callinectes sapidus (95)
Cyanophora paradoxa (95)
Ensifer adhaerens (95)
Entamoeba histolytica (95)
Escherichia coli (95)
Histomonas meleagridis (95)
Leishmania major strain Friedlin (95)
Listeria monocytogenes (95)
Homo sapiens (83)
Mus musculus (21)
Rattus norvegicus (9)
Arabidopsis thaliana (6)
Escherichia coli (5)
Oryza sativa (3)
Macaca fascicularis fascicularis (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Rhodococcus opacus (1)
Hevea brasiliensis (1)
Clonorchis sinensis (1)
Zea mays (1)
Schizosaccharomyces pombe (1)
Chlorocebus sabaeus (1)
Homo sapiens x Mus musculus hybrid cell line (1)
Human parechovirus strain T82-0169 (1)
Pseudomonas ogarae (1)
Pyricularia oryzae 70-15 (1)
Toxoplasma gondii RH (1)

Repository

pride (95)
iProX (66)
biostudies-arrayexpress (56)
MetaboLights (27)
EGA (17)
MassIVE (6)
BioModels (4)
PeptideAtlas (3)
GNPS (2)

Tissue

Cell culture (25)
Brain (7)
Epithelial cell (6)
Liver (6)
Testis (5)
Heart (4)
Permanent cell line cell (4)
Others (3)
Blood cell (3)
Blood serum (3)
Macrophage (3)
B cell (2)
Blood plasma (2)
Bone marrow (2)
Colon (2)
Hepatocyte (2)
Kidney (2)
Lung (2)
Neutrophil (2)
Ovary (2)
Plant cell (2)
Primary cell (2)
Whole body (2)
Blood platelet (1)
Cell suspension culture (1)
Cerebrospinal fluid (1)
Cholangiocarcinoma cell line (1)
Cotyledon (1)
HeLa cell (1)
Kupffer cell (1)

Disease

Colon cancer (4)
Disease free (4)
Breast cancer (2)
Hepatocellular carcinoma (2)
Stomach carcinoma (2)
Brain glioblastoma multiforme (1)
Cardiovascular system disease (1)
Cholangiocarcinoma (1)
Infantile hypotonia with psychomotor retardation and characteristic facies-3 (1)
Major depressive disorder (1)
Multiple myeloma (1)
Peripheral primitive neuroectodermal tumor (1)
Severe acute respiratory syndrome (1)
Stomach cancer (1)
Type 2 diabetes mellitus (1)
Vascular dementia (1)

Technology Type

Mass Spectrometry (95)
Shotgun proteomics (62)
Mass spectrometry (23)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (8)
Bottom-up proteomics (6)
Mass spectrometry assay (4)
Top-down proteomics (4)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Data-independent acquisition (2)
SWATH MS (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry imaging (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (17)
Liquid Chromatography MS - positive - reverse phase (16)
Liquid Chromatography MS - positive - hilic (5)
Q Exactive HF (3)
Liquid Chromatography MS - negative - hilic (3)
TripleTOF 6600 (2)
Q Exactive (2)
Liquid Chromatography MS - - reverse phase (2)
LTQ Orbitrap Elite (2)
Hamamatsu Nanozoomer S60 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap Velos Pro (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
QExactive (1)

Publication Date

2023 (31)
2021 (26)
2022 (22)
2025 (22)
2019 (17)
2020 (15)
2024 (14)
2016 (14)
2017 (13)
2018 (11)
2014 (11)
2012 (9)
2015 (8)
2010 (7)
2013 (6)
2026 (6)
2005 (3)
2011 (2)
2008 (2)
2009 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15354 (11)
CHEBI:17295 (10)
CHEBI:55328 (9)
CHEBI:16704 (9)
CHEBI:17596 (9)
CHEBI:46961 (8)
CHEBI:16196 (8)
CHEBI:16393 (8)
CHEBI:17568 (8)
CHEBI:17750 (8)
CHEBI:15971 (8)
CHEBI:16347 (8)
CHEBI:16828 (8)
CHEBI:64563 (8)
CHEBI:17351 (8)
CHEBI:17368 (8)
CHEBI:30769 (8)
CHEBI:18132 (7)
CHEBI:16040 (7)
CHEBI:16708 (7)
CHEBI:28875 (7)
CHEBI:16566 (7)
CHEBI:16335 (7)
CHEBI:16467 (7)
CHEBI:15891 (7)
CHEBI:17405 (7)
CHEBI:30915 (7)
CHEBI:17895 (7)
CHEBI:18344 (7)
CHEBI:64566 (6)

Metabolite Name

Uridine (7)
Uracil (6)
Choline (6)
Taurine (6)
L-Tryptophan (6)
Inosine (6)
Hypoxanthine (6)
LysoPC(15:0) (5)
L-Arginine (5)
Methyl jasmonate (5)
Citric acid (5)
Adenosine (5)
Linoleic acid (5)
Adenine (5)
Myristic acid (5)
L-Tyrosine (5)
Ethyl glucuronide (4)
LysoPE(0:0/18:0) (4)
Betaine (4)
Genistein (4)
Stearidonic acid (4)
Sphingosine (4)
Gingerol (4)
Kynurenic acid (4)
Phytosphingosine (4)
Palmitoleic acid (4)
L-Histidine (4)
Cortisone (4)
4-Hydroxybenzaldehyde (4)
Deoxycholic acid (4)

IsPrivate

False (4)

Submitter Keywords

Immuno-oncology (1)

Modelling Approach

Ordinary differential equation model (4)

Study type

Transcription profiling by array (19)
RNA-seq of coding RNA (16)
ChIP-seq (11)
RNA-seq of non coding RNA (4)
Cell line - One-color microarray (1)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (1116)
2022 (891)
2023 (887)
2024 (886)
2021 (678)
2020 (517)
2019 (305)
2018 (274)
2017 (241)
2016 (184)
2026 (157)
2015 (153)
2014 (121)
2013 (69)
2012 (61)
2010 (42)
2011 (34)
2009 (29)
2008 (10)
2005 (6)
2007 (4)
2002 (3)
2006 (1)
2004 (1)
2003 (1)

Lab affiliation

State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, N0. 1037 Luoyudong Road, Hongshan District, Wuhan 430074 (2)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (2)
State Key Lab of Reproductive Medicine, Nanjing Medical University (2)
Zhejiang University (2)
1)Chongqing Medical University;2) Chongqing Key Laboratory of Translational Research for Cancer Metastasis and Individualized Treatment, Chongqing University Cancer Hospital (1)
Basic Medicine, Guangxi University of Chinese Medicine, Nanning, China (1)
Beijing Key Laboratory for Radiobiology, Beijing Institute of Radiation Medicine, Beijing 100850, P.R. China (1)
Beijing Proteome Research Center, 38 Science Park Road, Changping District, Beijing 102206, China. (1)
Beijing proteome research center, Beijing, China (1)
Bio-X Institutes, Key Laboratory for the Genetics of Development and Neuropsychiatric Disorders (Ministry of Education), Shanghai Key Laboratory of Psychotic Disorders, and Brain Science and Technology Research Center, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China. (1)
Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University, Linan, Hangzhou, 311300, People's Republic of China. (1)
College of Life and Environmental Science, Hangzhou Normal University, Hangzhou 310036, China; Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, Hangzhou Normal University, Hangzhou 310036, China (1)
Department of Analytical Chemistry, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China (1)
Department of Anesthesiology, Xiangya Hospital, Central South University, Changsha, China (1)
Department of Burns and Reconstructive Surgery, Xiangya Hospital, Central South University, Changsha, Hunan, P.R. China. (1)
Department of Cancer Biology, Dana-Farber Cancer Institute Department of Cell Biology, Harvard Medical School (1)
Department of Cardiology, Chengdu Third People’s Hospital/Affiliated Hospital of Southwest Jiaotong University, Chengdu, China. (1)
Department of Chemistry, The University of Hong Kong (1)
Department of Endocrinology and Metabolism, The First Affiliated Hospital of Nanjing Medical University. (1)
Department of Human Anatomy, Histology, and Embryology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education) and State Key Laboratory of Natural and Biomimetic Drugs,Peking University Health Science Center, Beijing 100191, China. (1)
Department of Molecular Integrative Physiology University of Illinois at Urbana/Champaign Urbana, IL 61801 (1)
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, California 92037 United States (1)
Department of Neurology, the First Affiliated Hospital of Chongqing Medical University, Chongqing 400016, China (1)
Department of Pathophysiology, Key Laboratory of Ministry of Education for Neurological Disorders, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (1)
Department of orthopaedics, the First Affiliated Hopital of Soochow University, Suzhou, China 215006 (1)
Dept.Pharmacology & Chemical Biology UPMC Hillman Cancer Center (1)

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One-step triplex reverse-transcription PCR detection of porcine epidemic diarrhea virus, porcine sapelovirus, and porcine sapovirus.

Not available

S-EPMC6900713 | biostudies-literature

Protocol for a parallel assignment prospective, randomised, comparative trial to evaluate the safety and efficacy of intense pulsed light (IPL) combined with 3% diquafosol (DQS) ophthalmic solution in dry eye syndrome.

Not available

S-EPMC10465902 | biostudies-literature

Study on the Development and Formation Specifics of Longissimus Dorsi Muscles in Ziwuling Black Goats.

Not available

S-EPMC12649415 | biostudies-literature

Based on the Metabolomic Approach the Energy Metabolism Responses of Oriental River Prawn Macrobrachium nipponense Hepatopancreas to Acute Hypoxia and Reoxygenation

Hypoxia represents a major physiological challenge for prawns and is a problem in aquaculture. Therefore, an understanding of the metabolic response mechanism of economically important prawn species to hypoxia and re-oxygenation is essential. However, little is known about the intrinsic mechanisms b...

2021-05-17 | MTBLS584 | MetaboLights

Short-term effects of ophthalmic topical 0.01% atropine on the ocular surface, pupil size, and subsequent subjective quality of vision in young myopic Chinese adults.

Not available

S-EPMC11412257 | biostudies-literature

Differences of airborne and mural microorganisms in a 1,500-year-old Xu Xianxiu's Tomb, Taiyuan, China.

Not available

S-EPMC10635417 | biostudies-literature

Transcriptomic and metabolomic analyses reveal the differential accumulation of phenylpropanoids and terpenoids in hemp autotetraploid and its diploid progenitor

Background

Cannabis sativa, a dioecious plant that has been cultivated worldwide for thousands of years, is known for its secondary metabolites, especially cannabinoids, which possess several medicinal effects. In this study, we investigated the autopolyploidization effects on the biosynthes...

2023-09-21 | MTBLS6032 | MetaboLights

A new infrageneric classification of Gastrochilus (Orchidaceae: Epidendroideae) based on molecular and morphological data.

Not available

S-EPMC11390603 | biostudies-literature

Palmitic Acid Inhibits the Growth and Metastasis of Gastric Cancer by Blocking the STAT3 Signaling Pathway.

Not available

S-EPMC9856364 | biostudies-literature

New species and new records of Trigonalyidae (Hymenoptera) from Tibet, China.

Not available

S-EPMC7082393 | biostudies-literature