Xu Jin J - OmicsDI

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Unknown (4050)
Proteomics (126)
Genomics (24)
Metabolomics (18)
Transcriptomics (16)
Multiomics (3)
Other (1)

Organisms

Homo sapiens (73)
Allexis (46)
Arabidopsis thaliana (46)
Entamoeba histolytica HM-1:IMSS-A (46)
Escherichia coli (46)
Homo sapiens (46)
Listeria monocytogenes (46)
Medicago truncatula (46)
Meleagris gallopavo (46)
Mus musculus (18)
Escherichia coli (5)
Drosophila melanogaster (3)
Hordeum vulgare (2)
Anser cygnoides (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Brassica oleracea (1)
Drosophila simulans (1)
Neisseria meningitidis (1)
Oryza sativa Japonica Group (1)
Gallus gallus (1)
Arabidopsis thaliana (1)
Chlorocebus sabaeus (1)
Morchella sextelata (1)
Oryctolagus cuniculus (1)
Polygonatum cyrtonema (1)
Pseudomonas ogarae (1)
Rattus rattus (1)
Saccharina japonica (1)
Staphylococcus aureus (1)

Repository

iProX (71)
pride (46)
EGA (21)
biostudies-arrayexpress (19)
MetaboLights (18)
PeptideAtlas (5)
MassIVE (4)
GPMDB (1)

Tissue

Cell culture (10)
Others (3)
Epithelial cell (3)
Heart (3)
Hepatocyte (3)
Liver (3)
Skin (3)
Male Reproductive System (2)
Blood cell (2)
Brain (2)
Embryo (2)
Pancreas (2)
Permanent cell line cell (2)
Plant cell (2)
Blood (1)
Blood plasma (1)
CNS neuron (sensu Nematoda and Protostomia) (1)
Cerebrospinal fluid (1)
Electrically active cell (1)
Flower (1)
Flower bud (1)
Gastric epithelium (1)
Haploid cell (1)
Keratinocyte (1)
Leaf (1)
Macrophage (1)
Melanocyte (1)
Placenta (1)
Short term hematopoietic stem cell (1)
Sperm (1)

Disease

Disease free (5)
VSV infection (1)
Not Available (1)
Acute pancreatitis (1)
Breast cancer (1)
Cardiovascular system disease (1)
Colon cancer (1)
Gastroesophageal adenocarcinoma (1)
Hepatocellular carcinoma (1)
Liver cancer (1)
Liver disease (1)
Pancreatitis (1)
Severe acute respiratory syndrome (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (46)
Shotgun proteomics (22)
Mass spectrometry (14)
Gel-based experiment (8)
Data-dependent acquisition (6)
Bottom-up proteomics (3)
NMR spectroscopy (2)
Mass spectrometry assay (2)
Affinity proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Top-down proteomics (2)
Affymetrix/Illumina (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Data-independent acquisition (1)
DiaPASEF (1)
Mass spectrometry imaging (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (7)
Orbitrap Fusion Lumos (2)
Gas Chromatography MS - positive (2)
Nuclear Magnetic Resonance (NMR) - (2)
LTQ Orbitrap Elite (2)
LTQ Orbitrap Velos (2)
Instrument (1)
LTQ Orbitrap (1)
Q Exactive (1)
Liquid Chromatography MS - negative – rp (1)
Liquid Chromatography MS - positive – rp (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
API 5500 QTRAP (AB Sciex) (1)
MS Imaging - (1)
Xevo QTof MS (Waters) (1)
Xevo G2 QTOF (Waters) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
QExactive (1)
ThermoFinnigan LCQ Deca XP (1)
ThermoFinnigan LTQ (1)

Publication Date

2022 (23)
2023 (20)
2021 (15)
2025 (14)
2024 (10)
2015 (8)
2026 (8)
2014 (7)
2017 (5)
2018 (4)
2010 (3)
2016 (2)
2013 (2)
2007 (2)
2019 (2)
2011 (1)
2009 (1)
2008 (1)
2020 (1)

UNIPROT ID/AC

A0A024R563 (5)
A0A024R8H9 (5)
A0A024RAN2 (5)
A0A024RC46 (5)
A0A087WVZ5 (5)
A0A087WXI0 (5)
A0A087X1S3 (5)
A0A0A0MS51 (5)
A0A0A0MSA7 (5)
A0A0C4DG89 (5)
A0AV96 (5)
A0AVT1 (5)
A0FGR8 (5)
A0FGR8-2 (5)
A0FGR8-6 (5)
A0MZ66 (5)
A0PJW6 (5)
A1L0T0 (5)
A1X283 (5)
A2BFH1 (5)
A2RRP1 (5)
A2RTX5 (5)
A3KN83 (5)
A4D110 (5)
A4D1P6 (5)
A4D1S5 (5)
A5A3E0 (5)
A5YKK6 (5)
A6NDG6 (5)
A6NDU8 (5)

ENSEMBL ID

ENSG00000170477 (5)
ENSG00000247315 (5)
ENSG00000147251 (4)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:16704 (10)
CHEBI:17568 (8)
CHEBI:30769 (8)
CHEBI:17992 (7)
CHEBI:18101 (6)
CHEBI:30763 (6)
CHEBI:16112 (6)
CHEBI:15891 (6)
CHEBI:24813 (6)
CHEBI:32816 (6)
CHEBI:16027 (6)
CHEBI:16015 (6)
CHEBI:30805 (6)
CHEBI:17596 (6)
CHEBI:16914 (6)
CHEBI:28716 (6)
CHEBI:17351 (6)
CHEBI:17368 (6)
CHEBI:16927 (5)
CHEBI:16031 (5)
CHEBI:17154 (5)
CHEBI:17234 (5)
CHEBI:27266 (5)
CHEBI:35033 (5)
CHEBI:16359 (5)
CHEBI:25017 (5)
CHEBI:50202 (5)
CHEBI:16709 (5)
CHEBI:16335 (5)
CHEBI:16393 (5)

Metabolite Name

Uridine (7)
Triphenyl phosphate (5)
Uracil (5)
Dalpanin (4)
Isoxanthopterin (4)
Leucine (4)
Valine (4)
Kaempferol (4)
Spermine (4)
Piceatannol (4)
Xanthurenic acid (4)
Naringenin (4)
Sebacic acid (4)
Spermidine (4)
Guanine (4)
L-Glutamate (4)
Isoleucine (4)
Sucrose (4)
Creatine (4)
Inosine (4)
Hypoxanthine (4)
Pyridoxine (Vitamin B6) (3)
Mefenacet (3)
Deoxyloganin (3)
Dibutyl adipate (3)
Procyanidin B2 (3)
Peonidin 3-O-glucoside (3)
Kandelin A-1 (3)
Praziquantel (3)
Cyclophosphamide (3)

Study type

Transcription profiling by array (8)
RNA-seq of coding RNA (5)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)

Release Date

2025 (642)
2022 (570)
2024 (531)
2023 (505)
2021 (429)
2020 (314)
2019 (209)
2017 (163)
2018 (161)
2016 (108)
2015 (108)
2026 (100)
2014 (69)
2013 (44)
2012 (34)
2011 (25)
2010 (20)
2009 (11)
2008 (5)
2007 (5)
2005 (5)
2006 (2)
2004 (2)
2001 (2)
2000 (2)
2003 (1)
2002 (1)
1998 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
Department of Hepatobiliary Surgery, Nanfang Hospital, Southern Medical University, Guangzhou, China (2)
Anhui Province Key Laboratory of Medical Physics and Technology, Institute of Health and Medical Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China University of Science and Technology of China, Hefei, Anhui 230026, P. R. China Hefei Cancer Hospital, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China Precision Medicine Research Laboratory of Anhui Province, Hefei, Anhui 230088, P. R. China (1)
Beijing proteome research center, Beijing, China (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School Cancer Biology, Dana-Farber Cancer Institute (1)
Center of Growth Metabolism and Aging, College of Life Sciences, Sichuan University, Chengdu, China. (1)
Chinese Academy of Sciences (1)
College of Animal Science and Veterinary Medicine, Huazhong Agricultural University, Wuhan, China (1)
College of Biomedical Engineering & Instrument Science, Zhejiang University (1)
Department of Cancer Biology, Wake Forest Baptist Hospital (1)
Department of Neurology and Institute of Neurology, Rui Jin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China. (1)
Department of Pathology (1)
Department of Physiology, Medical College of Georgia, Augusta University (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Guangdong Provincial Key Laboratory of Tropical Disease Research, School of Public Health, Southern Medical University, Guangzhou, China (1)
Human Immunological Diseases Section, Laboratory of Clinical Immunology and Microbiology, Division of Intramural Research, NIAID, NIH, Department of Health and Human Services, Unites States Government (1)
Institut Pasteur of Shanghai (1)
Key Laboratory for Metabolic Diseases in Chinese Medicine, Nanjing University of Chinese Medicine (1)
Key Laboratory of Aging and Cancer Biology of Zhejiang Province, School of Basic Medical Sciences, Hangzhou Normal University, Hangzhou, 311121, China (1)
Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), School of Basic Medical Sciences, Shanghai Medical College, Fudan University, Shanghai, China. (1)
Kunming Institute of Botany, CAS (1)
Laboratory of Molecular Oncology, Frontiers Science Center for Disease-related Molecular Network, State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Chengdu 610041, China. (1)
Professor, Department of Cell and Regenerative Biology Professor, Department of Chemistry Director of Mass Spectrometry Human Proteomics Program School of Medicine and Public Health University of Wisconsin-Madison (1)
Research Center for Blood Engineering and Manufacturing, Cyrus Tang Medical Institute, National Clinical Research Center for Hematologic Diseases, Collaborative Innovation Center of Hematology, Jiangsu Institute of Hematology, Institute of Blood and Marrow Transplantation, The First Affiliated Hospital of Soochow University, State Key Laboratory of Radiation Medicine and Protection, Soochow University, Suzhou, China. (1)
School of Pharmaceutical Sciences, Key Laboratory of Biotechnology Pharmaceutical Engineering, Wenzhou Medical University, Wenzhou, Zhejiang, P. R. China (1)
Scientific Research Center, Shanghai Public Health Clinical Center, Fudan University, Jinshan District, Shanghai, China (1)
Southern Medical University, Guangzhou, China (1)
Southern Medical University, No. 1023-1063, Shatai South Road, Baiyun District, Guangzhou (1)
State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China (1)
State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China (1)

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Impatiens tainingensis (Balsaminaceae), a new species from southeastern China.

Not available

S-EPMC12835872 | biostudies-literature

Comprehensive analysis of lncRNA-miRNA-mRNA during proliferative phase of rat liver regeneration.

Not available

S-EPMC6617821 | biostudies-literature

The alteration of 5-hydroxymethylcytosine modification contributes to ischemic brain injury [5hmC-seq]

Epigenetic modifications, such as cytosine methylation and histone modification, have been shown involved in the pathology of ischemic brain injury. Recent works have implicated 5-hydroxymethylcytosine (5hmC), a DNA base derived from 5-methylcytosine (5mC) through the oxidation by Ten-Eleven Translo...

ORGANISM(S): Mus musculus

2015-09-08 | E-GEOD-67188 | biostudies-arrayexpress

Predicting the Impact of Climate Change on the Selection of Reintroduction Sites for the South China Tiger (Panthera tigris amoyensis) in China.

Not available

S-EPMC11394341 | biostudies-literature

County-level colposcopy attendance in China's national cervical cancer screening programme: a cross-sectional ecological study of Fujian province.

Not available

S-EPMC12519705 | biostudies-literature

Genome-Wide Identification of GRAS Gene Family in Cunninghamia lanceolata and Expression Pattern Analysis of ClDELLA Protein Under Abiotic Stresses.

Not available

S-EPMC11594883 | biostudies-literature

A novel strategy for mining and identification of acylcarnitines using data-independent-acquisition (DIA) based retention time prediction modeling and pseudo-characteristic fragmentation ions matching

It is a challenging work to screen, identify, and quantify acylcarnitines in complex biological samples. A method, based on the retention time (RT) prediction and data-independent acquisition strategies, was proposed for the large-scale identification of acylcarnitines using liquid chromatography co...

2021-10-06 | MTBLS1932 | MetaboLights

Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

Network Pharmacology and Experimental Validation to Explore the Mechanism of Qing-Jin-Hua-Tan-Decoction Against Acute Lung Injury.

Not available

S-EPMC9304690 | biostudies-literature

Extracts of Zuo Jin Wan, a traditional Chinese medicine, phenocopies 5-HTR1D antagonist in attenuating Wnt/β-catenin signaling in colorectal cancer cells.

Not available

S-EPMC5706385 | biostudies-literature