Xu Ye Y - OmicsDI

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Unknown (3890)
Proteomics (104)
Transcriptomics (27)
Genomics (17)
Metabolomics (12)

Organisms

Homo sapiens (68)
Andropogon gerardi (41)
Bacteria (41)
Bartonella quintana JK 31 (41)
Canis lupus familiaris (41)
Clavibacter nebraskensis NCPPB 2581 (41)
Cnidaria (41)
Ensifer adhaerens (41)
Human alphaherpesvirus 1 strain 17 (41)
Human alphaherpesvirus 1 strain KOS (41)
Human betaherpesvirus 5 (41)
Human herpesvirus 2 strain 186 (41)
Mesocricetus auratus (41)
Miscanthus x giganteus (41)
Mus musculus (41)
Panicum virgatum (41)
Mus musculus (24)
Streptococcus suis (2)
Ovis aries (2)
Mycolicibacterium smegmatis MC2 51 (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Oryza sativa Indica Group (1)
Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)
Cancer (1)
Candida albicans (1)
Oryctolagus cuniculus (1)
Rattus norvegicus (1)
Takifugu obscurus (1)
Zea mays (1)

Repository

iProX (61)
pride (41)
biostudies-arrayexpress (33)
MetaboLights (12)
EGA (11)
MassIVE (1)
PAXDB (1)

Tissue

Cell culture (13)
Epithelial cell (4)
B cell (2)
Blood plasma (2)
Cell suspension culture (2)
Heart (2)
Kidney (2)
Leaf (2)
Blood (1)
Brain (1)
Early embryonic cell (1)
Embryo (1)
Erythrocyte (1)
Hepatocyte (1)
Lens (1)
Liver (1)
Lung (1)
Monocyte (1)
Nasopharyngeal carcinoma cell (1)
Plant cell (1)
Plasma cell (1)
Regional part of brain (1)
Shoot (1)
Stomach (1)
Stomach lumen (1)
T cell (1)
Whole body (1)

Disease

Breast cancer (3)
Acute leukemia (2)
COVID-19 (2)
Bacterial infectious disease (1)
Cardiovascular system disease (1)
Cataract (1)
Disease free (1)
Neuroblastoma (1)
Polycystic Kidney (1)
Stomach carcinoma (1)

Technology Type

Mass Spectrometry (41)
Shotgun proteomics (17)
Mass spectrometry (11)
Data-dependent acquisition (7)
Bottom-up proteomics (5)
Gel-based experiment (5)
Top-down proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
SWATH MS (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
All-ion fragmentation (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (7)
Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
Q Exactive HF (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2023 (23)
2025 (19)
2024 (17)
2022 (16)
2021 (14)
2026 (12)
2010 (7)
2014 (6)
2020 (6)
2016 (5)
2013 (5)
2019 (5)
2015 (4)
2007 (3)
2018 (3)
2012 (2)
2008 (1)
2017 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

CHEBI ID

CHEBI:15354 (6)
CHEBI:17368 (6)
CHEBI:18292 (5)
CHEBI:18186 (5)
CHEBI:16704 (5)
CHEBI:15843 (5)
CHEBI:32816 (5)
CHEBI:27897 (5)
CHEBI:17895 (5)
CHEBI:17596 (5)
CHEBI:16390 (4)
CHEBI:28918 (4)
CHEBI:67252 (4)
CHEBI:28937 (4)
CHEBI:16811 (4)
CHEBI:28044 (4)
CHEBI:16393 (4)
CHEBI:27823 (4)
CHEBI:17650 (4)
CHEBI:55328 (4)
CHEBI:28834 (4)
CHEBI:36274 (4)
CHEBI:16359 (4)
CHEBI:16411 (4)
CHEBI:24813 (4)
CHEBI:43355 (4)
CHEBI:17405 (4)
CHEBI:36005 (4)
CHEBI:17533 (4)
CHEBI:15891 (4)

Metabolite Name

Hypoxanthine (6)
Choline (5)
Uracil (4)
Arachidonic acid (4)
Valine (3)
Betaine (3)
Sphingosine (3)
3,4,5-Trimethoxycinnamic acid (3)
Palmitoleic acid (3)
Cotinine (3)
Methionine (3)
Taurine (3)
Taurocholic acid (3)
Docosahexaenoic acid (3)
L-Arginine (3)
Adenosine (3)
Cytosine (3)
Salicylic acid (3)
Proline (3)
Glutamine (3)
Creatine (3)
Sulfisoxazole (2)
Citreovirenone (2)
(9R,10S,12Z)-9,10-Dihydroxy-8-oxo-12-octadecenoic acid (2)
DL-Tyrosine (2)
3beta-(3-methyl-butanoyloxy)-villanovane-13alpha,17-diol (2)
4-formyl Indole (2)
21-Deoxycortisol (2)
Indole-3-ethanol (2)
3,4-Dihydro-2H-1-benzopyran-2-one (2)

Study type

ChIP-chip by tiling array (9)
Transcription profiling by array (8)
RNA-seq of coding RNA (5)
Methylation profiling by high throughput sequencing (4)
Comparative genomic hybridization by array (2)
ChIP-seq (2)
RNA-seq of non coding RNA (2)
Other (1)

Release Date

2025 (687)
2022 (572)
2024 (515)
2023 (510)
2021 (426)
2020 (289)
2019 (164)
2018 (135)
2017 (117)
2016 (114)
2015 (104)
2026 (90)
2014 (77)
2013 (34)
2012 (26)
2010 (20)
2011 (19)
2009 (9)
2007 (5)
2008 (3)
2005 (2)
2003 (2)
2006 (1)
2002 (1)
2000 (1)

Lab affiliation

Zhejiang University (3)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
Shenzhen Hospital of Southern Medical University (2)
College of Pharmacy, Jinan University, Guangzhou 510632, P. R. China (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China (1)
Department of Cardiovascular Surgery, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) (1)
Department of Gastrointestinal Surgery, Zhongshan Hospital of Xiamen University, School of Medicine, Xiamen (1)
Department of Physiology and Pathophysiology, Tianjin Medical University, Tianjin,, China (1)
Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China (1)
Department of System Biology, School of Life Sciences, Guangdong Provincial Key Laboratory of Cell Microenvironment and Disease Research, Shenzhen Key Laboratory of Cell Microenvironment, Southern University of Science and Technology, Shenzhen, 518055, China. (1)
Department of Urology,Zhongnan Hospital of Wuhan University,Wuhan 430071,China. Frontier Science Center for Immunology and Metabolism,Medical Research Institute,Wuhan University,Wuhan 430071,China. (1)
Eye Hospital of Wenzhou Medical University at Hangzhou, 618 East Fengqi Road, Hangzhou (1)
Fisheries College, Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Jimei University, Xiamen, Fujian, PR China. (1)
Harold C. Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, TX, USA (1)
Hu Bei province,enshi Acandemy of Agricutural sciences (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China (lab head) (1)
Institute of Blood Transfusion, Chinese Academy of Medical Sciences & Peking Union Medical College, Chengdu, China, 610052 (1)
Institute of Molecular Medicine (IMM), Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200240, China. (1)
Institutes of Biology and Medical Sciences, Soochow University, Suzhou, People's Republic of China (1)
JNU-HKUST Joint Laboratory for Neuroscience and Innovative Drug Research, College of Pharmacy, Jinan University, Guangzhou 510632, Guangdong, China (1)
JNU-HKUST Joint Laboratory for Neuroscience and Innovative Drug Research, College of Pharmacy, Jinan University, Guangzhou 510632, Guangdong, China. (1)
Laboratory of Molecular Oncology, Frontiers Science Center for Disease-related Molecular Network, State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Chengdu 610041, China. (1)
MOE Key Laboratory of Tumor Molecular Biology and State Key Laboratory of Bioactive Molecules and Druggability Assessment, Institute of Life and Health Engineering, Jinan University, Guangzhou, China (1)
National Center for Advancing Translational Sciences, National Institutes of Health (1)
Northwest University (1)
Professor, Department of Cellular and Molecular Pharmacology (1)
Shanghai Jiao Tong University (1)

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The complete chloroplast genome of the brown alga Saccharina sp. ye-B (Laminariaceae: Phaeophyceae) from Sakhalin, Russia.

Not available

S-EPMC7899685 | biostudies-literature

Blueberry Anthocyanins from Commercial Products: Structure Identification and Potential for Diabetic Retinopathy Amelioration.

Not available

S-EPMC9655577 | biostudies-literature

ena-DATASET-DTU-20-02-2017-20:47:48:841-649 - samples

Variants on the Y chromosome for 62 danish males in VCF format from the GenomeDenmark Phase 2 cohort. Variants were called using reference based approaches such as the haplotype-caller module from GATK and using alignment of denovo assemblies to the reference using ASMvar.

EGAD00001003186 | EGA

Palliation of malignant esophageal stent esophagorespiratory fistula with rigid bronchoscope and Y silicone trachea stent: experience with seven patients.

Not available

S-EPMC10944729 | biostudies-literature

Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations

OBJECTIVE: This study aimed to investigate the plasma metabolic profile of patients with extracranial arteriovenous malformations (AVM).

METHOD: Plasma samples were collected from 32 AVM patients and 30 healthy controls (HC). Ultra-high performance liquid c...

2023-10-30 | MTBLS7753 | MetaboLights

County-level colposcopy attendance in China's national cervical cancer screening programme: a cross-sectional ecological study of Fujian province.

Not available

S-EPMC12519705 | biostudies-literature

RAD51AP2 is required for efficient meiotic recombination between X and Y chromosomes.

Not available

S-EPMC8754306 | biostudies-literature

Association Between Fasting Blood Glucose and All-Cause Mortality in a Rural Chinese Population: 15-Year Follow-Up Cohort Study.

Not available

S-EPMC7547918 | biostudies-literature

Direct reprogramming of mouse fibroblasts into cardiomyocytes with chemical cocktails

The direct conversion, or trans-differentiation, of non-cardiac cells into cardiomyocytes by forced expression of transcription factors and microRNAs provide promising ways of cardiac regeneration. However, genetic manipulations are still not desirable in real clinical applications. we report the ge...

ORGANISM(S): Mus musculus

2015-08-23 | E-GEOD-69924 | biostudies-arrayexpress

Mutation Mapping of 31 Streptococcus suis strains

Identification of Genes and Genomic Islands Correlated with High Pathogenicity through Tilling Microarray-Based Comparative Genomics in S. suis. Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. S. suis isolates have been categorized ...

ORGANISM(S): Streptococcus suis

2012-08-08 | E-GEOD-26052 | biostudies-arrayexpress

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4050 Results

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