Xue Chao C - OmicsDI

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Unknown (48)
Proteomics (17)
Metabolomics (6)
Transcriptomics (3)
Genomics (1)

Organisms

Homo sapiens (12)
Mus musculus (2)
Cardamine circaeoides (1)
Macaca fascicularis fascicularis (1)
Pyrus x bretschneideri (1)
Rattus rattus (1)
Andropogon gerardi (1)
Bacteria (1)
Canis lupus familiaris (1)
Chromatiales bacterium OalgGamma1 (1)
Clavibacter nebraskensis NCPPB 2581 (1)
Cnidaria (1)
Ensifer adhaerens (1)
Fasciola (1)
Human alphaherpesvirus 1 strain 17 (1)
Human alphaherpesvirus 1 strain KOS (1)
Human betaherpesvirus 5 (1)
Human herpesvirus 2 strain 186 (1)
Mesocricetus auratus (1)
Miscanthus x giganteus (1)
Mus musculus (1)
Panicum virgatum (1)
Platyhelminthes (1)
Pseudomonas aeruginosa PA103 (1)
Rattus norvegicus (1)
Rattus rattus (1)
Rhodococcus jostii RHA1 (1)
Rhodopseudomonas palustris (1)
Shigella (1)
Sorghastrum nutans (1)

Repository

iProX (14)
MetaboLights (4)
biostudies-arrayexpress (3)
GNPS (2)
MassIVE (2)
EGA (1)
pride (1)

Tissue

Saliva (1)

Technology Type

Mass spectrometry (4)
Bottom-up proteomics (1)
Data-independent acquisition (1)
Mass Spectrometry (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
Q Exactive HF (2)
TripleTOF 6600 (2)

Publication Date

2020 (7)
2023 (4)
2024 (3)
2009 (2)
2025 (2)
2022 (2)
2019 (2)
2021 (2)
2014 (1)
2026 (1)

CHEBI ID

CHEBI:31550 (2)
CHEBI:177855 (2)
CHEBI:79283 (2)
CHEBI:172591 (2)
CHEBI:180640 (2)
CHEBI:180638 (2)
CHEBI:187204 (2)
CHEBI:16496 (2)
CHEBI:141521 (2)
CHEBI:177741 (2)
CHEBI:5556 (2)
CHEBI:88773 (2)
CHEBI:168736 (2)
CHEBI:169041 (2)
CHEBI:174173 (2)
CHEBI:180633 (2)
CHEBI:136629 (2)
CHEBI:168628 (2)
CHEBI:166727 (2)
CHEBI:139131 (2)
CHEBI:172628 (2)
CHEBI:137157 (2)
CHEBI:28800 (2)
CHEBI:44794 (2)
CHEBI:17833 (2)
CHEBI:145278 (2)
CHEBI:72952 (2)
CHEBI:9347 (2)
CHEBI:133077 (2)
CHEBI:16390 (2)

Metabolite Name

3beta-(3-methyl-butanoyloxy)-villanovane-13alpha,17-diol (2)
Lithocholyltaurine (2)
PI(18:2(9Z,12Z)/0:0) (2)
Epothilone B (2)
Dehydroepiandrosterone sulfate (2)
16-Hydroxy hexadecanoic acid (2)
Arachidonic acid (2)
7-Sulfocholic acid (2)
TMC-1D (1)
PKODiA-PC (1)
PC(16:0/5:0(COOH)) (1)
PS(DiMe(11,3)/DiMe(11,5)) (1)
DG(14:0/19:0/0:0) (1)
Americine (1)
PS(22:4(7Z,10Z,13Z,16Z)/0:0) (1)
O-(11-carboxyundecanoyl)carnitine (1)
N-linoleoyl dopamine (1)
2-(2-Methylbutanoyl)-9-(3-methyl-2E-pentenoyl)-2b,9a-dihydroxy-4Z,10(14)-oplopadien-3-one (1)
Oxycarboxin (1)
Isothankunic acid (1)
5-[(E)-2-(4-hydroxyphenyl)ethenyl]-2-[(1E)-3-methylbuta-1,3-dien-1-yl]benzene-1,3-diol (1)
1-dimethylarsinoyl-tricosane (1)
N2-(3-Hydroxysuccinoyl)arginine (1)
N-(p-Hydroxyphenethyl)actinidine (1)
2-[4-(3-Hydroxypropyl)-2-methoxyphenoxy]-1,3-propanediol (1)
(2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate (1)
Mannopine (1)
Methionyl-Arginine (1)
Saphenamycin (1)
PA(14:1(9Z)/0:0) (1)

Study type

Transcription profiling by array (2)
RNA-seq of coding RNA (1)

Release Date

2023 (12)
2025 (11)
2024 (8)
2009 (3)
2017 (3)
2015 (3)
2022 (2)
2021 (2)
2020 (2)
2018 (2)
2014 (1)
2019 (1)
2007 (1)

Lab affiliation

Department of Pharmaceutical Sciences, University at Buffalo, The State University of New York, Buffalo, NY, USA (1)

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A novel strategy for mining and identification of acylcarnitines using data-independent-acquisition (DIA) based retention time prediction modeling and pseudo-characteristic fragmentation ions matching

It is a challenging work to screen, identify, and quantify acylcarnitines in complex biological samples. A method, based on the retention time (RT) prediction and data-independent acquisition strategies, was proposed for the large-scale identification of acylcarnitines using liquid chromatography co...

2021-10-06 | MTBLS1932 | MetaboLights

PTB CLIP-seq

Recent transcriptome analysis indicates that >90% of human genes undergoes alternative splicing, underscoring the contribution of differential RNA processing to diverse proteomes in higher eukaryotic cells. The polypyrimidine tract binding protein PTB is a well-characterized splicing repressor, but ...

ORGANISM(S): Homo sapiens

2009-12-24 | E-GEOD-19323 | biostudies-arrayexpress

Highlights of Tuft Cells in Mouse and Human Salivary Glands

Tuft cells (TCs) are rare chemosensory epithelial cells that regulate mucosal homeostasis in several organs, but their role in salivary glands (SGs) remains unclear. This study investigated TC features in both mouse and human SGs. In mouse samples, transmission electron microscopy (TEM), histologica...

ORGANISM(S): Mus musculus (Mouse)

2026-04-27 | PXD075581 | Pride