Xue M M - OmicsDI

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Unknown (6381)
Proteomics (261)
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Genomics (110)
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Models (1)
Other (1)

Organisms

Homo sapiens (293)
Mus musculus (65)
Oryza sativa (17)
Arabidopsis thaliana (14)
Escherichia coli (13)
Saccharomyces cerevisiae (10)
Rattus norvegicus (10)
Schizosaccharomyces pombe (6)
Drosophila melanogaster (5)
Triticum aestivum (3)
Rattus rattus (3)
Bacillus sp. N16-5 (2)
Staphylococcus aureus subsp. aureus NCTC 8325 (2)
Oryza sativa Japonica Group (2)
Caenorhabditis elegans (2)
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Bubalus bubalis (2)
Mus (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Papilio xuthus (1)
Tomato yellow leaf curl China virus (1)
uncultured bacterium (1)
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Neurospora crassa (1)
Oryza sativa Indica Group (1)
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Cryptococcus neoformans (1)
Canis lupus familiaris (1)
Danio rerio (1)

Organisms

Schizosaccharomyces pombe (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (163)
pride (160)
EGA (86)
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MetaboLights (83)
MassIVE (8)
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geo (1)
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Tissue

Cell culture (39)
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Whole body (2)
Adipocyte (1)
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Astrocyte (1)
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Disease

Breast cancer (4)
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Acute leukemia (2)
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Disease free (2)
Malignant neoplasm of ovary (2)
Non-small cell lung carcinoma (2)
Thyroid cancer (2)
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Not Available (1)
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Diarrhea (1)
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Hidradenitis suppurativa (1)
Kidney cancer (1)
Laryngeal squamous cell carcinoma (1)
Lymphoma (1)
Neuroblastoma (1)
Oligospermia (1)
Osteosarcoma (1)
Peritoneal mesothelioma (1)
Systemic lupus erythematosus (1)
Vascular dementia (1)

Technology Type

Mass Spectrometry (160)
Shotgun proteomics (79)
Mass spectrometry (56)
Bottom-up proteomics (29)
Mass spectrometry assay (26)
Affinity purification coupled with mass spectrometry proteomics (14)
Data-dependent acquisition (13)
Data-independent acquisition (11)
SWATH MS (11)
Illumina 15K (8)
Gel-based experiment (8)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Top-down proteomics (5)
Illumina HiSeq 2000 (3)
Mass spectrometry imaging (2)
SRM/MRM (2)
HumanOmniExpress-12 v1.1 BeadChip-GenCall (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Illumina HiSeq 2000 (ILLUMINA) (1)
Illumina HiSeq 2000, Illumina HumanOmni2-5M-8v1-1_B (1)
Illumina HiSeq 2000, Illumina HumanOmni2-5_8v1_A (1)
ZCall, HumanExome_12v1.1_A -GenCall (1)
NMR spectroscopy (1)
DiaPASEF (1)
HDMSE (1)
MSE (1)
Olink affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (35)
Liquid Chromatography MS - negative - reverse phase (33)
Liquid Chromatography MS - negative - reverse-phase (9)
Liquid Chromatography MS - positive - hilic (9)
Liquid Chromatography MS - positive - reverse-phase (9)
Liquid Chromatography MS - negative - hilic (8)
Illumina HiSeq 2500 (5)
TripleTOF 6600 (5)
Illumina NovaSeq 6000 (4)
Liquid Chromatography MS - alternating - reverse-phase (4)
MaXis II (3)
Liquid Chromatography MS - negative (3)
Liquid Chromatography MS - positive (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Q Exactive HF (2)
6530 Q-TOF LC/MS (Agilent) (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - negative - HILIC (2)
Liquid Chromatography MS - positive - HILIC (2)
Xevo G2 QTOF (Waters) (2)
- (1)
NextSeq 2000 (1)
Instrument (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)

Publication Date

2026 (55)
2021 (50)
2022 (46)
2025 (46)
2024 (44)
2023 (41)
2020 (28)
2014 (25)
2013 (25)
2015 (22)
2012 (21)
2019 (17)
2011 (15)
2010 (15)
2017 (13)
2016 (13)
2018 (13)
2008 (9)
2009 (7)
2004 (4)
2007 (3)
2005 (1)

UNIPROT ID/AC

P06208-2 (4)
Q0250 (2)
P07263-2 (1)
P32874 (1)
P38431-2 (1)
Q0045 (1)
Q0085 (1)
Q0105 (1)
Q01532 (1)

CHEBI ID

CHEBI:10698 (1)
CHEBI:10983 (1)
CHEBI:10986 (1)
CHEBI:109895 (1)
CHEBI:111762 (1)
CHEBI:1148 (1)
CHEBI:1156 (1)
CHEBI:11805 (1)
CHEBI:11851 (1)
CHEBI:1189 (1)
CHEBI:11892 (1)
CHEBI:11951 (1)
CHEBI:12427 (1)
CHEBI:12876 (1)
CHEBI:128769 (1)
CHEBI:12936 (1)
CHEBI:12947 (1)
CHEBI:1296 (1)
CHEBI:12962 (1)
CHEBI:13115 (1)
CHEBI:13534 (1)
CHEBI:13705 (1)
CHEBI:144365 (1)
CHEBI:1463 (1)
CHEBI:14649 (1)
CHEBI:15035 (1)
CHEBI:15075 (1)
CHEBI:15076 (1)
CHEBI:15343 (1)
CHEBI:15347 (1)

Metabolite Name

Adenine (20)
L-Phenylalanine (18)
Uridine (18)
Adenosine (17)
Hypoxanthine (17)
L-Tyrosine (16)
Choline (15)
Cytidine (15)
L-Glutamine (15)
Uracil (15)
Cytosine (14)
Xanthosine (14)
Creatine (13)
Guanine (13)
Indole (13)
Inosine (13)
Riboflavin (13)
Spermidine (13)
Taurine (13)
Thymidine (13)
Trigonelline (13)
Arachidonic acid (12)
Cholic acid (12)
Citric acid (12)
Guanosine (12)
Oleamide (12)
Sucrose (12)
2-Hydroxycinnamic acid (11)
Betaine (11)
Creatinine (11)

First Public Date

2014 (2)
2025 (1)

Modelling Approach

Constraint-based model (1)
Metabolic network (1)

Lab affiliation

Nantong Key Laboratory of Environmental Toxicology, Department of Occupational Medicine and Environmental Toxicology, School of Public Health, Nantong University, Nantong, China (4)
Department of Clinical Laboratory, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (3)
University at buffalo, SUNY (3)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Abbvie Bioresearch Center (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang Province, China (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
UCLA (2)
1. College of Veterinary Medicine, Northwest Agriculture and Forestry University, Yangling 712100, Shaanxi, China; 2. Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling 712100, Shaanxi, China (1)
1. Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2. University of Chinese Academy of Sciences, Beijing 100049, China (1)
1. Nephrology Department of Guilin No. 924 Hospital, Guangxi Key laboratory of Metabolic Diseases Research, Guilin Key laboratory of Kidney Diseases Research, 541002, Guilin, Guangxi, People’s Republic of China. 2. Clinical Medical Research Center, the Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), 518020, Shenzhen, Guangdong, People’s Republic of China. (1)
Aarhus University Department of Biomedicine Høegh-Guldbergsgade 10 DK-8000 Aarhus C (1)
Air Force Medical University (1)
Associate Professor, Department of Biochemistry & Molecular Biology, UTMB Mass Spectrometry Director, University of Texas Medical Branch – Galveston, Texas, USA (1)
BGI-Shenzhen,China (1)
Beijing proteome research center (1)
Biochemistry and Structural Biology Greehey Children's Cancer Research Institute University of Texas Health at San Antonio United States (1)
Bioheat and mass transfer laboratory, Med-X Research Institute, Shanghai Jiao Tong University (1)
Cancer Center of Union Hospital, Tongji Medical College,Huazhong University of Science and Technology (1)
Center of Reproductive Medicine, Nanjing Jinling Hospital, Clinical School of Medical College, Nanjing University, China. (1)
Changchun Veterinary Research Institute (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
Dalian Institute of Chemcial and Physics, China (1)
Dalian Institute of Chemical and Physics, Chinese Academy of Sciences (1)
Department of Allergy, Beijing Shijitan Hospital, Capital Medical University, Beijing, China. (1)
Department of Biochemistry and Molecular Cell Biology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Shanghai Jiao Tong University School of Medicine, Shanghai, China (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA (1)
Department of Biochemistry, Purdue University, West Lafayette, IN USA (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Study type

Transcription profiling by array (78)
RNA-seq of coding RNA (32)
ChIP-seq (17)
RNA-seq of non coding RNA (7)
ChIP-chip by tiling array (4)
Comparative genomic hybridization by array (4)
Other (4)
Methylation profiling by high throughput sequencing (4)
Methylation profiling by array (3)
Unknown experiment type (2)
RNA-seq of coding RNA from single cells (2)
Cell line - Single-cell sequencing (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)

Release Date

2025 (1011)
2022 (892)
2023 (820)
2024 (756)
2021 (667)
2020 (502)
2019 (354)
2018 (260)
2017 (230)
2016 (219)
2015 (152)
2026 (133)
2014 (129)
2013 (97)
2012 (88)
2011 (65)
2010 (61)
2009 (33)
2008 (29)
2007 (20)
2006 (10)
2005 (7)
2004 (2)
2003 (2)
2002 (2)
2001 (1)
2000 (1)

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Multi-omics integration reveals Yu-Xue-Bi tablets attenuate rheumatoid arthritis via metabolic reprogramming-mediated Piezo1 suppression

As a systemic chronic inflammatory disease, Rheumatoid arthritis (RA) is characterized by progressive inflammation, bone and cartilage destruction, leading to significant disability, reduced lifespan, and increased mortality. The clinical use of conventional medications including nonsteroidal ant...

2026-01-24 | MTBLS13760 | MetaboLights

Genome-wide gene expression in response to mating pheromones in S. pombe

Fission yeast cells undergo sexual differentiation in response to nitrogen starvation. In this process haploid M and P cells first mate to form diploid zygotes, which subsequently enter meiosis and sporulate. Prior to mating, M cells secrete M-factor and P-cells secrete P-factor, and these diffusibl...

ORGANISM(S): Schizosaccharomyces pombe

2007-08-21 | E-GEOD-5323 | biostudies-arrayexpress

Genome-wide QTL mapping of yield and agronomic traits in two widely adapted winter wheat cultivars from multiple mega-environments.

Not available

S-EPMC8627123 | biostudies-literature

Salt tolerance evaluation and mini-core collection development in Miscanthus sacchariflorus and M. lutarioriparius.

Not available

S-EPMC10948507 | biostudies-literature

Heterogeneity and glycan masking of cell wall microstructures in the stems of Miscanthus x giganteus, and its parents M. sinensis and M. sacchariflorus.

Not available

S-EPMC3843723 | biostudies-literature

[Pathogenic mechanisms of Leber hereditary optic neuropathy caused by m.3472T>C mutation].

Not available

S-EPMC12750053 | biostudies-literature

Metabolomic insights into the browning of the peel of bagging 'Rui Xue' apple fruit

BACKGROUND: Bagging is one of the most important techniques for the production of high-quality fruits. In the act of cultivation, we found a new kind of browning in peel of the apple fruit that occurs before harvest and worsens during the storage period. There are many studies on...

2021-04-09 | MTBLS2384 | MetaboLights

Five new species of Mydaea from China (Diptera, Muscidae).

Not available

S-EPMC6914718 | biostudies-literature

PTB CLIP-seq

Recent transcriptome analysis indicates that >90% of human genes undergoes alternative splicing, underscoring the contribution of differential RNA processing to diverse proteomes in higher eukaryotic cells. The polypyrimidine tract binding protein PTB is a well-characterized splicing repressor, but ...

ORGANISM(S): Homo sapiens

2009-12-24 | E-GEOD-19323 | biostudies-arrayexpress

Complete plastome sequence of Monoon laui (Merr.) B. Xue and R.M.K. Saunders, 2012: an endemic species in Hainan.

Not available

S-EPMC9467546 | biostudies-literature

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