Xue Xue X - OmicsDI

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Unknown (9900)
Proteomics (380)
Transcriptomics (101)
Metabolomics (70)
Genomics (52)
Multiomics (3)
Other (2)
Clinical (1)

Organisms

Homo sapiens (220)
Mus musculus (58)
Rattus norvegicus (8)
Oryza sativa (7)
Escherichia coli (7)
Drosophila melanogaster (5)
Arabidopsis thaliana (5)
Triticum aestivum (4)
Saccharomyces cerevisiae (4)
Rattus rattus (4)
Schizosaccharomyces pombe (2)
Scutellaria baicalensis (2)
Anser cygnoides (2)
Bubalus bubalis (2)
Babesia microti (2)
Gallus gallus (2)
Bos taurus (2)
Mus (2)
Haemaphysalis longicornis (2)
Larimichthys crocea (1)
Tomato yellow leaf curl China virus (1)
Streptococcus mutans UA159 (1)
uncultured bacterium (1)
Solanum habrochaites (1)
Oryza sativa Indica Group (1)
Populus tremula x Populus alba (1)
Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)
Canis lupus familiaris (1)
Aeromonas veronii (1)

Organisms

Sus scrofa (1)
Rattus norvegicus (1)

Repository

iProX (169)
pride (138)
biostudies-arrayexpress (109)
MetaboLights (66)
PeptideAtlas (63)
EGA (38)
MassIVE (8)
GNPS (4)
NODE (3)
jPOST (2)
ENA (2)
geo (1)
GPMDB (1)
PAXDB (1)

Tissue

Liver (44)
Cell culture (37)
Brain (10)
Lung (9)
Epithelial cell (9)
Liver (7)
Permanent cell line cell (6)
Plant cell (5)
Testis (5)
Leaf (5)
Kidney (5)
Blood (5)
Others (3)
Heart (3)
Plasma Non-glyco (2)
Pancreatic ductal cell (2)
Sperm (2)
Blood serum (2)
Cell suspension culture (2)
Blood plasma (2)
Whole body (2)
Photosynthetic cell (2)
Blood cell (2)
Cholangiocarcinoma cell line (1)
Prostate neuroendocrine cell (1)
Pericyte cell (1)
Adrenal medulla chromaffin cell (1)
Ovary cell line (1)
Pituitary gland (1)
Nephrocyte (1)

Disease

Pancreatic cancer (4)
Breast cancer (4)
Non-small cell lung carcinoma (2)
Chronic lymphocytic leukemia (2)
Malignant neoplasm of ovary (2)
Disease free (2)
Acute leukemia (2)
Gastrointestinal cancer (1)
Not Available (1)
Diarrhea (1)
Prostate neuroendocrine neoplasm (1)
Laryngeal squamous cell carcinoma (1)
Peritoneal mesothelioma (1)
Esophagus squamous cell carcinoma (1)
Thyroid cancer (1)
Oligospermia (1)
Polycystic ovary syndrome (1)
Prostate adenocarcinoma (1)
Systemic lupus erythematosus (1)
Cholangiocarcinoma (1)
Lymphoma (1)
Neuroblastoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (138)
Shotgun proteomics (67)
Mass spectrometry (50)
Bottom-up proteomics (28)
Mass spectrometry assay (14)
Affinity purification coupled with mass spectrometry proteomics (13)
Data-dependent acquisition (11)
SWATH MS (10)
Data-independent acquisition (9)
Illumina 15K (8)
Gel-based experiment (6)
Top-down proteomics (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Illumina HiSeq 2000, ILLUMINA (2)
NMR spectroscopy (2)
ZCall, HumanExome_12v1.1_A -GenCall (1)
HumanOmniExpress-12 v1.1 BeadChip-GenCall (1)
Illumina HiSeq 2000 (1)
Mass spectrometry imaging (1)
MSE (1)
DiaPASEF (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (31)
Liquid Chromatography MS - negative - reverse phase (28)
Illumina HiSeq 2500 (5)
Q Exactive (5)
Liquid Chromatography MS - positive - reverse-phase (4)
Liquid Chromatography MS - negative - reverse-phase (4)
Q Exactive HF (3)
Liquid Chromatography MS - positive - hilic (3)
Illumina HiSeq 4000 (2)
TripleTOF 6600 (2)
6530 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
Bruker (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - alternating - reverse-phase (2)
Liquid Chromatography MS - alternating - hilic (2)
Xevo G2 QTOF (Waters) (2)
Liquid Chromatography MS - negative - hilic (2)
- (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Instrument (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - negative – rp (1)
Liquid Chromatography MS - positive – rp (1)

Publication Date

2021 (45)
2022 (45)
2025 (43)
2023 (43)
2026 (40)
2024 (30)
2020 (29)
2014 (25)
2019 (22)
2015 (18)
2013 (16)
2018 (14)
2017 (13)
2010 (13)
2012 (11)
2016 (7)
2011 (7)
2008 (5)
2004 (4)
2009 (3)
2006 (2)
2007 (1)
2005 (1)
2002 (1)
2001 (1)

UNIPROT ID/AC

4565.Traes_2AL_0735EE314.1 (1)
W5CSI8_WHEAT (1)
4565.Traes_7DL_5414349CB.1 (1)
4565.Traes_7BL_EDD146B23.2 (1)
A0A3B6IRW5_WHEAT (1)
W5FYY9_WHEAT (1)
A0A3B6E9R0_WHEAT (1)
A0A3B6N2S9_WHEAT (1)
A0A3B5Y2E0_WHEAT (1)
4565.Traes_6AS_631C94232.1 (1)
4565.Traes_5BS_C99F88651.1 (1)
A0A3B6KFL9_WHEAT (1)
A0A3B6C7H6_WHEAT (1)
4565.Traes_3AL_66C8A1BCE.1 (1)
4565.Traes_7AL_E981255F4.1 (1)
4565.Traes_3DL_F79CCAE00.2 (1)
4565.Traes_6DL_92A0F4993.1 (1)
4565.Traes_4AL_37B6568C5.1 (1)
4565.Traes_1BL_6FE4EB955.1 (1)
A0A3B6TWG7_WHEAT (1)
A0A3B6TZE5_WHEAT (1)
4565.Traes_3DS_846AC2A89.1 (1)
4565.Traes_4DL_05FC2A668.1 (1)
4565.Traes_7BS_0FE347D4E.1 (1)
4565.Traes_3DS_1589098D3.1 (1)
A0A3B6MI73_WHEAT (1)
A0A3B6JED0_WHEAT (1)
4565.Traes_1BS_C25C6D1AD.1 (1)
A0A341WW92_WHEAT (1)
A0A3B6PUM5_WHEAT (1)

ENSEMBL ID

ENSG00000170477 (4)

CHEBI ID

CHEBI:16704 (21)
CHEBI:17368 (18)
CHEBI:30769 (17)
CHEBI:17596 (16)
CHEBI:17620 (15)
CHEBI:16708 (15)
CHEBI:16750 (15)
CHEBI:15891 (15)
CHEBI:17295 (15)
CHEBI:7916 (14)
CHEBI:15741 (14)
CHEBI:28875 (14)
CHEBI:116314 (13)
CHEBI:16259 (13)
CHEBI:17858 (13)
CHEBI:16235 (13)
CHEBI:16566 (13)
CHEBI:17154 (13)
CHEBI:16335 (13)
CHEBI:55328 (13)
CHEBI:17895 (13)
CHEBI:16828 (13)
CHEBI:28635 (12)
CHEBI:15843 (12)
CHEBI:16040 (12)
CHEBI:17568 (12)
CHEBI:16450 (12)
CHEBI:17992 (12)
CHEBI:15354 (12)
CHEBI:18089 (12)

Metabolite Name

Adenine (15)
Uridine (15)
L-Phenylalanine (14)
Hypoxanthine (13)
Cytosine (11)
Uracil (11)
Taurine (11)
Xanthosine (11)
Adenosine (11)
Guanosine (11)
Inosine (11)
Sphinganine (10)
Guanine (10)
Glycerophosphocholine (10)
L-Tyrosine (10)
Riboflavin (10)
Citric acid (10)
Sucrose (10)
Spermidine (9)
Indole (9)
L-Isoleucine (9)
L-Glutamine (9)
Cytidine (9)
Trigonelline (8)
Benzaldehyde (8)
L-Proline (8)
Citrulline (8)
Choline (8)
Cholic acid (8)
Arachidonic acid (8)

First Public Date

2022 (1)
2014 (1)

Study status

Terminated (1)

Study type

Transcription profiling by array (47)
RNA-seq of coding RNA (26)
ChIP-seq (8)
RNA-seq of non coding RNA (6)
Unknown experiment type (4)
Other (4)
Methylation profiling by high throughput sequencing (3)
ChIP-chip by tiling array (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
Transcription profiling by MPSS (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Interventional (1)

Release Date

2025 (1737)
2022 (1392)
2023 (1358)
2024 (1244)
2021 (1068)
2020 (729)
2019 (505)
2018 (408)
2017 (318)
2016 (281)
2015 (214)
2026 (200)
2014 (181)
2013 (86)
2012 (80)
2011 (53)
2010 (51)
2008 (35)
2009 (30)
2007 (18)
2006 (11)
2005 (3)
2002 (3)
2004 (1)
2003 (1)
2001 (1)
2000 (1)

Lab affiliation

University at buffalo, SUNY (3)
Nantong Key Laboratory of Environmental Toxicology, Department of Occupational Medicine and Environmental Toxicology, School of Public Health, Nantong University, Nantong, China (3)
Department of Clinical Laboratory, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (3)
Shanghai Institute of Thoracic Tumors, Shanghai Chest Hospital, Shanghai, 200030, China. (lab head) (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang Province, China (2)
Abbvie Bioresearch Center (2)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Sichuan University (2)
The First Affiliated Hospital of Guangxi Medical University (1)
Guangdong Provincial Key Laboratory of Regional Immunity and Diseases, Shenzhen Key Laboratory of Translational Medicine of Tumor, International Cancer Center, Department of Cell Biology and Genetics, School of Medicine, Shenzhen University, Shenzhen, 518055, China. (1)
Run Run Shaw Hospital, Zhejiang University School of Medicine (1)
Changchun Veterinary Research Institute (1)
Henan Institute of Medical and Pharmaceutical Sciences, Zhengzhou University (1)
1. Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2. University of Chinese Academy of Sciences, Beijing 100049, China (1)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing, Jiangsu 210029, China. (1)
Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, China 510120. (1)
Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences (1)
Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, College of Life Sciences,Shaanxi Normal University,Xi'an,Shaanxi,China (1)
Queen's University Belfast, UK (1)
1. College of Veterinary Medicine, Northwest Agriculture and Forestry University, Yangling 712100, Shaanxi, China; 2. Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling 712100, Shaanxi, China (1)
department of Bacteriology Capital Institute of Pediatrics (1)
aCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan Province, PR China (1)
WWU Münster Institute for Plant Biology and Biotechnology Schlossplatz 8 48143 Münster (1)
Lu Qingtao, Ph.D. Photosynthesis Research Center, Room 230 Institute of Botany, CAS Haidian Xiangshan Nanxincun 20# Beijing. 100093 Phone, +86-10-62836254 Email, lu_qingtao@ibcas.ac.cn (1)
School of Medicine, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. (1)
University/Hospital: the Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital) Street Name & Number: No. 1017, North of Dongmen Road, Shenzhen City, Guangdong Province 518020, China (1)
Department of Plastic Surgery, Affiliated Friendship Plastic Surgery Hospital of Nanjing Medical University, Nanjing Medical University, Nanjing, China (1)

Location

Australia (1)

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Metabolomic insights into the browning of the peel of bagging 'Rui Xue' apple fruit

BACKGROUND: Bagging is one of the most important techniques for the production of high-quality fruits. In the act of cultivation, we found a new kind of browning in peel of the apple fruit that occurs before harvest and worsens during the storage period. There are many studies on...

2021-04-09 | MTBLS2384 | MetaboLights

Bu-Fei-Huo-Xue capsule alleviates bleomycin-induced pulmonary fibrosis in mice through modulating gut microbiota

Not available

S-EPMC9944029 | biostudies-literature

Expression data wheat Flag Leaf at anthesis

TaMYB13 is a transcription factor that has been associated with fructan accumulation in previous studies in wheat (Xue et al. 2011 Plant journal 68: 857 - 870). In this study we aimed to find genes regulated by TaMYB13, through overexpression of this transcription factor in wheat and perform express...

ORGANISM(S): Triticum aestivum

2013-07-01 | E-GEOD-42000 | biostudies-arrayexpress

Genome-wide gene expression in response to mating pheromones in S. pombe

Fission yeast cells undergo sexual differentiation in response to nitrogen starvation. In this process haploid M and P cells first mate to form diploid zygotes, which subsequently enter meiosis and sporulate. Prior to mating, M cells secrete M-factor and P-cells secrete P-factor, and these diffusibl...

ORGANISM(S): Schizosaccharomyces pombe

2007-08-21 | E-GEOD-5323 | biostudies-arrayexpress

PTB CLIP-seq

Recent transcriptome analysis indicates that >90% of human genes undergoes alternative splicing, underscoring the contribution of differential RNA processing to diverse proteomes in higher eukaryotic cells. The polypyrimidine tract binding protein PTB is a well-characterized splicing repressor, but ...

ORGANISM(S): Homo sapiens

2009-12-24 | E-GEOD-19323 | biostudies-arrayexpress

Therapeutic effects of Sheng Xue Fang in a cyclophosphamide-induced anaemia mouse model.

Not available

S-EPMC8238071 | biostudies-literature

Therapeutic effect of Xue Niao An on glyoxylate-induced calcium oxalate crystal deposition based on urinary metabonomics approach.

Not available

S-EPMC4227831 | biostudies-literature

Transcriptome Profiling of A549 Xenografts of Nonsmall-cell Lung Cancer Treated with Qing-Re-Huo-Xue Formula.

Not available

S-EPMC9507736 | biostudies-literature

Sheng Xue Ning as a Novel Agent that Promotes SCF-Driven Hematopoietic Stem/Progenitor Cell Proliferation to Promote Erythropoiesis.