Yan Yuan Y - OmicsDI

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Unknown (1635)
Proteomics (78)
Transcriptomics (27)
Genomics (16)
Metabolomics (12)
Multiomics (1)
Other (1)

Organisms

Andropogon gerardi (37)
Bacteria (37)
Homo sapiens (35)
Mus musculus (6)
Streptomyces coelicolor (4)
Streptomyces griseus (3)
Macaca mulatta (3)
Streptomyces coelicolor A3(2) (3)
Rattus norvegicus (2)
Oryza sativa (2)
Arabidopsis thaliana (2)
Streptomyces sp. SirexAA-E (1)
Deinococcus gobiensis (1)
Streptomyces griseus subsp. griseus NBRC 13350 (1)
Streptomyces clavuligerus (1)
Rhizobium leguminosarum (1)
Streptomyces lividans (1)
Mycobacterium tuberculosis (1)
Streptomyces venezuelae (1)
Escherichia coli K-12 (1)
Saccharomyces cerevisiae (1)
Capsella rubella (1)
Cucumis sativus (1)
Elaeagnus angustifolia (1)
Gallus gallus (1)
Macaca fascicularis fascicularis (1)
Magnaporthe (1)
Pseudomonas aeruginosa PAO1 (1)
Staphylococcus aureus (1)
Streptomyces tagetis (1)

Repository

pride (37)
iProX (35)
biostudies-arrayexpress (32)
MetaboLights (12)
EGA (11)
MassIVE (4)
PAXDB (3)

Tissue

Epithelial cell (5)
Cell culture (4)
Testis (4)
Brain (3)
Heart (3)
Leaf (3)
Liver (2)
Permanent cell line cell (2)
Plant cell (2)
Stem cell (2)
Blood cell (1)
Blood plasma (1)
Embryo (1)
Flower bud (1)
Follicular fluid (1)
Kidney (1)
Lung (1)
Quadriceps (1)
Seed (1)
Short term hematopoietic stem cell (1)
Sperm (1)
Spleen (1)
Tendon (1)
Thallus (1)
Whole body (1)

Disease

Prostate adenocarcinoma (3)
Alzheimer's disease (1)
Colon cancer (1)
Disease free (1)
Malaria (1)
Mixed disorder as reaction to stress (1)
Osteoarthritis (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (18)
Mass spectrometry (8)
Bottom-up proteomics (6)
Data-dependent acquisition (4)
Gel-based experiment (4)
Top-down proteomics (4)
Affinity purification coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
Mass spectrometry assay (2)
Affinity proteomics (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
6530A Q-TOF LC/MS (1)
Bruker maXis ESI Quadrupole TOF (1)
LTQ Orbitrap XL (1)
Xevo G2-S QTof (1)
Gas Chromatography MS - positive - medium polarity - Flame ionisation detector MS - positive (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Nuclear Magnetic Resonance (NMR) (1)
Liquid Chromatography MS - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2024 (18)
2022 (16)
2023 (14)
2025 (10)
2018 (9)
2012 (8)
2021 (8)
2026 (7)
2019 (6)
2010 (6)
2020 (5)
2013 (4)
2014 (2)
2009 (2)
2008 (2)
2005 (2)
2015 (1)
2011 (1)
2006 (1)
2016 (1)

UNIPROT ID/AC

3MGH_STRCO (3)
6PGL_STRCO (3)
ACKA_STRCO (3)
ACPX_STRCO (3)
ACSA_STRCO (3)
ACT22_STRCO (3)
ACT3_STRCO (3)
ACYP_STRCO (3)
ADD1_STRCO (3)
ADD2_STRCO (3)
ADDL_STRCO (3)
ADE_STRCO (3)
AFSK_STRCO (3)
AFSQ1_STRCO (3)
AFSQ2_STRCO (3)
AFSR_STRCO (3)
AGAR_STRCO (3)
AHPD_STRCO (3)
ALDH_STRCO (3)
ALF_STRCO (3)
ALLB_STRCO (3)
ALLC_STRCO (3)
ALR_STRCO (3)
AMPA_STRCO (3)
AMPP1_STRCO (3)
AMPP2_STRCO (3)
ANSP_STRCO (3)
APEB_STRCO (3)
APT_STRCO (3)
ARC_STRCO (3)

CHEBI ID

CHEBI:30769 (6)
CHEBI:17597 (5)
CHEBI:16704 (5)
CHEBI:17568 (5)
CHEBI:16015 (5)
CHEBI:17154 (5)
CHEBI:17191 (5)
CHEBI:15354 (5)
CHEBI:17351 (5)
CHEBI:17368 (5)
CHEBI:20067 (5)
CHEBI:30805 (4)
CHEBI:16755 (4)
CHEBI:17362 (4)
CHEBI:27480 (4)
CHEBI:17750 (4)
CHEBI:15891 (4)
CHEBI:17509 (4)
CHEBI:18050 (4)
CHEBI:16040 (4)
CHEBI:32816 (4)
CHEBI:17203 (4)
CHEBI:30797 (4)
CHEBI:18012 (4)
CHEBI:17053 (4)
CHEBI:16027 (4)
CHEBI:16737 (4)
CHEBI:17295 (4)
CHEBI:15756 (4)
CHEBI:32798 (3)

Metabolite Name

Uracil (5)
Uridine (4)
Hypoxanthine (4)
Hydroxypyruvic acid (3)
Phthalic acid (3)
Kynurenic acid (3)
L-Malic acid (3)
Methyl jasmonate (3)
Nicotinamide (3)
Indole (3)
4-Hydroxybenzaldehyde (3)
L-Proline (3)
L-Glutamic acid (3)
3-Hydroxybutyric acid (3)
Adenosine (3)
D-Glucose (3)
Palmitic acid (3)
Linoleic acid (3)
L-Glutamine (3)
Azelaic acid (3)
L-Serine (3)
Thymidine (3)
Creatinine (3)
L-Valine (3)
L-Phenylalanine (3)
Inosine (3)
Isohyodeoxycholic acid (2)
Alpha-CEHC (2)
1-Decanol (2)
N-Formyl-L-aspartate (2)

Study type

Transcription profiling by array (14)
ChIP-seq (5)
RNA-seq of coding RNA (5)
Unknown experiment type (4)
RNA-seq of non coding RNA (2)
Comparative genomic hybridization by array (1)
Other (1)

Release Date

2025 (316)
2024 (240)
2022 (237)
2023 (205)
2021 (169)
2020 (102)
2019 (92)
2018 (58)
2016 (49)
2026 (44)
2017 (40)
2015 (21)
2013 (20)
2014 (19)
2012 (17)
2011 (11)
2010 (11)
2009 (7)
2005 (4)
2008 (3)
2006 (1)
2007 (1)

Lab affiliation

Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Amgen Inc. (1)
Beijing Key Laboratory of DNA Damage Response and College of Life Science, Capital Normal University, Beijing 100048, China (1)
Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University, Linan, Hangzhou, 311300, People's Republic of China. (1)
Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College (PUMC) (1)
Daping Hospital of AMU (1)
Department of Obstetrics/Gynecology, Joint Laboratory of Reproductive Medicine (SCU-CUHK), Key Laboratory of Obstetric, Gynecologic and Pediatric Diseases and Birth Defects of Ministry of Education, West China Second University Hospital, Sichuan University, Chengdu 610041, China. (1)
Department of Orthopedics, The Fourth Medical Centre, Chinese PLA General Hospital, Beijing, China National Clinical Research Center for Orthopedics, Sports Medicine & Rehabilitation, Beijing, China (1)
Department of Pathology and Duke Cancer Institute, Duke University School of Medicine,Durham, NC 27710, USA. (1)
Department of Pharmacotherapy and Translational Research, College of Pharmacy, University of Florida, Gainesville, Florida, United States of America (1)
Florida State University (1)
Institute of Neuroscience, College of Medicine, Xiamen University, Xiamen, Fujian, 361105, China (1)
Institute of Reproductive Health, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China. (1)
Joint International Research Laboratory of Metabolic & Developmental Sciences, Key Laboratory of Urban Agriculture (South) Ministry of Agriculture, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China (1)
Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, Beijing, China. (1)
Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, 100048 Beijing, China. (1)
Life Sciences Institute, Zhejiang University, Hangzhou, China. (1)
NO.2 Yabao Road, Beijing Province (1)
Nanjing Med Univ, State Key Lab Reprod Med, Dept Histol & Embryol, 140 Hanzhong Rd, Nanjing 210029, Jiangsu, Peoples R China. (1)
National Institute of Biological Sciences, Beijing, Beijing, China. (1)
Nurturing Station for the State Key Laboratory of Subtropical Silviculture, Zhejiang A 20 & F University, Dong Hu Campus, 88 Northern Circle Road, Linan 311300, China. (1)
Research Center for Blood Engineering and Manufacturing, Cyrus Tang Medical Institute, National Clinical Research Center for Hematologic Diseases, Collaborative Innovation Center of Hematology, Jiangsu Institute of Hematology, Institute of Blood and Marrow Transplantation, The First Affiliated Hospital of Soochow University, State Key Laboratory of Radiation Medicine and Protection, Soochow University, Suzhou, China. (1)
School of Biomedical Sciences, The University of Hong Kong (1)
School of Life Science & Research Center for Natural Peptide Drugs, Shaanxi Engineering & Technological Research Centre for Conservation & Utilization of Regional Biological Resources, Yanan University (1)
School of pharmaceutical science,Sun Yat-Sen University (1)
Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, China. (1)
Shuguang Hospital affiliated to Shanghai University of Traditional Chinese Medicine (1)
Southern University of Science and Technology (1)
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo University, Ningbo, Zhejiang 315211, China (1)

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Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

Chevrette et al 2019 Insect-associated Streptomyces

Paper title: The antimicrobial potential of Streptomyces from insect microbiomes. Author list: Chevrette MG, Carlson CM, Ortega HE, Thomas C, Ananiev GE, Barns KJ, Book AJ, Cagnazzo J, Carlos C, Flanigan W, Grubbs KJ, Horn HA, Hoffmann FM, Klassen JL, Knack JJ, Lewin GR, McDonald BR, Muller L, Melo ...

ORGANISM(S): Pseudonocardia Kitasatospora Streptomyces Gordonia <actinomycete>

2019-12-18 | MSV000084723 | MassIVE

Genome-wide distribution of AdpA, a global regulator for secondary metabolism and morphological differentiation in Streptomyces, revealed the extent and complexity of the AdpA regulatory network.

This SuperSeries is composed of the following subset Series: GSE33992: Streptomyces griseus transcriptome analysis in solid culture with delta adpA, encoding a global transcriptional regulator involved in morphological differentiation and secondary metabolism GSE33993: Streptomyces griseus transcrip...

ORGANISM(S): Streptomyces griseus

2012-04-03 | E-GEOD-33994 | biostudies-arrayexpress

An Arabidopsis Mutant Resistant to Thaxtomin A, a Cellulose Synthesis Inhibitor from Streptomyces Sp

Thaxtomin A is a phytotoxin produced by Streptomyces scabies and other Streptomyces species, the causative agents of common scab disease in potato and other taproot crops. At nanomolar concentrations, thaxtomin causes dramatic cell swelling, reduced seedling growth, and inhibition of cellulose synth...

ORGANISM(S): Arabidopsis thaliana

2005-12-19 | E-GEOD-3873 | biostudies-arrayexpress

Transcription profiling of human stage non-small cell lung cancer samples, metaanalysis for a predictive signature

We applied a meta-analysis of datasets from seven different microarray studies on lung cancer for differentially expressed genes related to survival time (under 2 y and over 5 y). Systematic bias adjustment in the datasets was performed by distance-weighted discrimination (DWD). We identified a gene...

ORGANISM(S): Homo sapiens

2008-06-14 | E-GEOD-6253 | biostudies-arrayexpress

Effect of different nitrogen source and Saccharomyces cerevisiae strain on volatile sulfur compounds and their sensory effects in chardonnay wine.

Not available

S-EPMC11406343 | biostudies-literature

S. coelicolor M752 SMM medium time course study

Antibiotic biosynthesis in Streptomyces species is controlled by a complex genetic and biochemical network of global and pathway specific regulators. Details of their precise interactions in mediating temporal and spatial expression of secondary metabolite genes remain poorly defined. In this study,...

ORGANISM(S): Streptomyces coelicolor

2010-10-25 | E-GEOD-22398 | biostudies-arrayexpress

Comparative metabolomic analysis of exudates of microcystin-producing and microcystin-free Microcystis aeruginosa strains

Cyanobacterial harmful algal blooms (cHABs) dominated by Microcystis aeruginosa threaten the ecological integrity and beneficial uses of lakes globally. In addition to producing hepatotoxic microcystins (MC), M. aeruginosa exudates (MaE) contain various compounds with demonstrat...

2023-01-16 | MTBLS6603 | MetaboLights

Maternal exposure to ambient temperature and risk of preterm birth in Chengdu, China, from 2017 to 2020: a cohort study.

Not available

S-EPMC11761215 | biostudies-literature

Microarray_adpA_mutant_Streptomyces_lividans_submission

Transcription profiling by array using Streptomyces coelicolor oligomerics array to compare the gene expression of streptomyces lividans adpA mutant to the wild type at early stationary phase in YEME medium.

ORGANISM(S): Streptomyces lividans

2014-03-27 | E-MTAB-2425 | biostudies-arrayexpress

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