Yang Jie J - OmicsDI

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Unknown (189)
Proteomics (107)
Transcriptomics (10)
Genomics (7)
Metabolomics (7)
Multiomics (3)

Organisms

Homo sapiens (64)
Andropogon gerardi (20)
Bacteria (20)
Bartonella quintana JK 31 (20)
Canis lupus familiaris (20)
Mus musculus (14)
Mus sp. (2)
Rattus norvegicus (2)
Rattus rattus (2)
Arabidopsis thaliana (1)
1328388 (1)
502593 (1)
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Escherichia coli (1)
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Nostoc sp. PCC 7120 = FACHB-418 (1)
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Verticillium dahliae VdLs.17 (1)
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Repository

iProX (81)
pride (20)
biostudies-arrayexpress (10)
EGA (7)
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Tissue

Liver (4)
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Disease

Cardiovascular system disease (1)
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Technology Type

Mass Spectrometry (20)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Mass spectrometry (6)
Data-dependent acquisition (4)
Bottom-up proteomics (3)
Shotgun proteomics (3)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
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Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
LTQ Orbitrap Elite (2)
Orbitrap Fusion (1)
Liquid Chromatography MS - Negative (LC-MS (Neg)) (1)
Liquid Chromatography MS - Positive (LC-MS (Pos)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Xevo G2 QTOF (Waters) (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
QExactive (1)

Publication Date

2024 (12)
2022 (11)
2026 (10)
2023 (8)
2021 (7)
2025 (6)
2020 (6)
2013 (5)
2018 (3)
2014 (3)
2012 (2)
2017 (2)
2015 (1)
2008 (1)
2006 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:16870 (3)
CHEBI:16566 (3)
CHEBI:46961 (3)
CHEBI:16828 (3)
CHEBI:17351 (3)
CHEBI:6005 (2)
CHEBI:2896 (2)
CHEBI:8501 (2)
CHEBI:9481 (2)
CHEBI:16945 (2)
CHEBI:27712 (2)
CHEBI:48430 (2)
CHEBI:16437 (2)
CHEBI:16988 (2)
CHEBI:17285 (2)
CHEBI:506227 (2)
CHEBI:17252 (2)
CHEBI:17933 (2)
CHEBI:17781 (2)
CHEBI:9009 (2)
CHEBI:17747 (2)
CHEBI:16857 (2)
CHEBI:16530 (2)
CHEBI:72959 (2)
CHEBI:15882 (2)
CHEBI:30913 (2)
CHEBI:17537 (2)
CHEBI:16865 (2)
CHEBI:36259 (2)
CHEBI:17203 (2)

Metabolite Name

N-Acetyl-D-glucosamine (2)
Thiamine (2)
Chenodeoxycholate (2)
Biliverdin (2)
Adenosine (2)
Riboflavin (2)
L-Glutamate (2)
Cytidine (2)
Xanthine (2)
Guanosine (2)
Thymidine (2)
L-Tyrosine (2)
L-Phenylalanine (2)
Aspidodasycarpine (1)
Oleanoic acid 3-O-glucuronide (1)
Polyprenylphosphate-glucose (1)
Di-trans,poly-cis-Decaprenyl diphosphate (1)
Sporulenol (1)
Melithiazol A (1)
104-1 (1)
Chlorhexidine gluconate (1)
Compound V(S) (1)
Dolichyl beta-D-glucosyl phosphate (1)
SSR 125543 (1)
Chlorpheniramine maleate (1)
Bougainvillein-r-I (1)
C-Toxiferine I (1)
BQ 485 (1)
CTX 3C (1)
Terpenoid EA-I (1)

Study type

RNA-seq of coding RNA (5)
Other (2)
Transcription profiling by array (2)
Comparative genomic hybridization by array (1)

Release Date

2025 (32)
2023 (26)
2022 (26)
2024 (21)
2021 (19)
2020 (15)
2017 (11)
2013 (10)
2019 (9)
2015 (8)
2016 (7)
2026 (5)
2018 (5)
2012 (2)
2008 (1)
2006 (1)
2014 (1)

Lab affiliation

Institute for Systems Biology (3)
1. Department of Biochemistry and Molecular Cell Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine. (2)
Institute For Systems Biology (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
1Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, 100084, China. (1)
Department of Biochemistry and Molecular Cell Biology, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Shanghai Jiao Tong University School of Medicine, Shanghai, 200025, P.R. China (1)
Department of Chemistry, College of Science,Southern University of Science and Technology,Shenzhen518055, China (1)
Institute of Fruit Tree Research. Guangdong Academy of Agricultural Sciences. Tianhe District, Guangzhou 510640, Guangdong Province, China (1)
Institute of Systems Biology, Seattle, WA. (1)
Ningxia Medical University (1)
Northwest University (1)
Shanghai Jiao Tong University (1)
Shanghai Veterinary Research Institute,Chinese Academy of Agricultural Sciences (1)
The scripps research institute, jupiter, Florida (1)
shandong normal university (1)

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Integrated 16S rRNA sequencing and metabolomics analysis to investigate the antidepressant role of Yang-Xin-Jie-Yu decoction on microbe-gut-metabolite in chronic unpredictable mild stress-induced depression rat model.

Not available

S-EPMC9565485 | biostudies-literature

Efficacy and safety of acupuncture-related therapies in symptomatic endometriosis: a systematic review and network meta-analysis.

Not available

S-EPMC11920332 | biostudies-literature

Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

¹H NMR-Based Metabolomics Reveals Refined-Huang-Lian-Jie-Du-Decoction (BBG) as a Potential Ischemic Stroke Treatment Drug With Efficacy and a Favorable Therapeutic Window.

Not available

S-EPMC6474285 | biostudies-literature

Bioinformatics analysis for the antirheumatic effects of huang-lian-jie-du-tang from a network perspective.

Not available

S-EPMC3856148 | biostudies-literature

Compositional Analysis of Grape Berries: Mapping the Global Metabolism of Grapes.

Not available

S-EPMC11639774 | biostudies-literature

Qing-Xin-Jie-Yu Granule attenuates myocardial infarction-induced inflammatory response by regulating the MK2/TTP pathway.

Not available

S-EPMC11849043 | biostudies-literature

PHSP-Net: Personalized Habitat-Aware Deep Learning for Multi-Center Glioblastoma Survival Prediction Using Multiparametric MRI.

Not available

S-EPMC12467337 | biostudies-literature

Qing-Wen-Jie-Re Mixture Ameliorates Poly (I:C)-Induced Viral Pneumonia Through Regulating the Inflammatory Response and Serum Metabolism.

Not available

S-EPMC9240632 | biostudies-literature

Proteomic analysis in mouse liver

Protein SUMOylation is crucial in both physiological and pathological contexts, but its role in acute liver injury is poorly understood. We found that SENP3, a SUMO2/3 protease, rapidly accumulates in hepatocytes around the pericentral vein zone within 2 hours of CCl₄-induced liver injury in mice. K...

ORGANISM(S): Mus musculus (Mouse)

2026-02-09 | PXD065391 | Pride

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320 Results

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