Yang Rui R - OmicsDI

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Unknown (113)
Proteomics (58)
Transcriptomics (12)
Metabolomics (10)
Genomics (6)

Organisms

Homo sapiens (42)
Mus musculus (14)
Alphavirus (9)
Archaea (9)
Bacteria (9)
Betaherpesvirinae (9)
Borrelia (9)
Botrytis cinerea (9)
Chlorella vulgaris (9)
Clostridium perfringens (9)
Enterovirus A71 (9)
Eukaryota (9)
Fungi (9)
Hepatitis B virus (9)
Human alphaherpesvirus 1 (9)
Human betaherpesvirus 5 (9)
Influenza A virus (9)
Influenza C virus (9)
Japanese encephalitis virus group (9)
Listeria monocytogenes (9)
Drosophila melanogaster (2)
Escherichia coli (2)
Ovis aries (1)
Aspergillus flavus NRRL3357 (1)
Escherichia coli K-12 (1)
Ganoderma lucidum G.260125-1 (1)
Glaesserella parasuis (1)
Glycine max (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Vibrio parahaemolyticus RIMD 2210633 (1)

Repository

iProX (44)
biostudies-arrayexpress (17)
MetaboLights (9)
pride (9)
MassIVE (3)
jPOST (2)
EGA (1)
GNPS (1)

Tissue

Cell culture (4)
Blood (1)
Blood cell (1)
Brain (1)
Epithelial cell (1)
Mammary gland (1)
Plasma cell (1)
Stem cell (1)

Disease

Cervical cancer (1)
Mastitis (1)

Technology Type

Mass Spectrometry (9)
Mass spectrometry (5)
Shotgun proteomics (5)
Mass spectrometry assay (4)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (3)
Q Exactive (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
MicrOTOF-Q II (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse-phase (1)

Publication Date

2022 (12)
2020 (7)
2026 (6)
2014 (5)
2021 (5)
2016 (4)
2015 (4)
2025 (4)
2023 (4)
2019 (4)
2012 (2)
2011 (2)
2006 (1)
2024 (1)
2017 (1)

CHEBI ID

CHEBI:28499 (3)
CHEBI:16755 (3)
CHEBI:15882 (3)
CHEBI:15366 (3)
CHEBI:18089 (3)
CHEBI:50122 (2)
CHEBI:17028 (2)
CHEBI:16526 (2)
CHEBI:132544 (2)
CHEBI:132543 (2)
CHEBI:140948 (2)
CHEBI:28885 (2)
CHEBI:28941 (2)
CHEBI:16016 (2)
CHEBI:50091 (2)
CHEBI:17302 (2)
CHEBI:31018 (2)
CHEBI:28527 (2)
CHEBI:27781 (2)
CHEBI:28792 (2)
CHEBI:30860 (2)
CHEBI:15873 (2)
CHEBI:17158 (2)
CHEBI:140947 (2)
CHEBI:42111 (2)
CHEBI:87986 (2)
CHEBI:86050 (2)
CHEBI:77131 (2)
CHEBI:17626 (2)
CHEBI:1387 (2)

Metabolite Name

2-Oxohexane (2)
Phenylalanyl-Methionine (2)
(+)-Gallocatechin (2)
2-Piperidinone (2)
Sinapic acid (2)
Succinyladenosine (2)
Luteolin (2)
Benzaldehyde (2)
6-Hydroxynicotinic acid (2)
Acetic acid (2)
Morphine (2)
Prolyl-Asparagine (2)
Benzoic acid (2)
Styrene (2)
Indole (2)
N-Acetyl-L-phenylalanine (2)
4-Hydroxynonenal (2)
Quercetagetin 4'-methyl ether 7-(6-(E)-caffeylglucoside) (1)
Cyanidin 3-(6''-p-coumarylglucoside)-5-4''',6'''-dimalonylglucoside) (1)
PC(O-20:0/19:0) (1)
Punaglandin 7 (1)
1-O-myristoyl-Cer(d18:1/16:0) (1)
PI(14:1(9Z)/18:2(9Z,12Z)) (1)
3-(4-hydroxy-3-methoxyphenyl)-11,19-bis(4-hydroxyphenyl)-4,12,20-trioxaheptacyclo[16.6.1.1?,?.1??,??.0??,??.0?,??.0??,??]heptacosa-1(25),5,7,9(27),13,15,17(26),21,23-nonaene-7,15,23-triol (1)
Delphinidin 3-robinobioside-5-(6-(E)-p-coumarylglucoside) (1)
Ortho-hydroxyatorvastatin (1)
Cer(t20:0/26:0(2OH)) (1)
{4-[5,7-dihydroxy-8-(3-methylbut-2-en-1-yl)-4-oxo-3,4-dihydro-2H-1-benzopyran-3-yl]-2-hydroxy-6-(3-methylbut-2-en-1-yl)phenyl}oxidanesulfonic acid (1)
Manumycin (1)
Calabricoside B (1)

Study type

RNA-seq of coding RNA (5)
ChIP-seq (4)
Transcription profiling by array (3)
Comparative genomic hybridization by array (1)
Other (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (15)
2016 (14)
2015 (14)
2021 (13)
2023 (12)
2017 (10)
2024 (9)
2019 (9)
2022 (8)
2014 (6)
2020 (6)
2012 (3)
2011 (3)
2026 (2)
2018 (2)
2006 (1)
2013 (1)
2005 (1)

Lab affiliation

Affiliated Hospital of Qinghai University, Qinghai , China (1)
Cancer Research Center, School of Medicine, Xiamen University (1)
Department of Neurology, The Second Affiliated Hospital (Xinqiao Hospital), Army Medical University (Third Military Medical University), Chongqing 400037, China (1)
Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Rui-Jin Hospital, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. (1)
Guangdong Institute of Microbiology, Guangdong Academy of Sciences (1)
Northwest Agriculture and Forestry University, Yangling District, Xianyang City, Shaanxi Province, China (1)
Texas Tech University (1)
West No.30 Xiao Hong Shan, Wuhan, Hubei 430071, China Email: hurui@apm.ac.cn (1)
Wuhan Institute of Physics and Mathematics (1)

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Metabolomic insights into the browning of the peel of bagging 'Rui Xue' apple fruit

BACKGROUND: Bagging is one of the most important techniques for the production of high-quality fruits. In the act of cultivation, we found a new kind of browning in peel of the apple fruit that occurs before harvest and worsens during the storage period. There are many studies on...

2021-04-09 | MTBLS2384 | MetaboLights

ASC Regulates Subcutaneous Adipose Tissue Lipogenesis and Lipolysis via p53/AMPKα Axis.

Not available

S-EPMC9456541 | biostudies-literature

Compound TDB (Tricyclic decyl benzoxazole) induces autophagy-dependent apoptosis in the gastric cancer cell line MGC-803 by regulating PI3K/AKT/mTOR.

Not available

S-EPMC7847516 | biostudies-literature

Differential contribution of cis-regulatory elements to higher order chromatin structure and expression of the CFTR locus

Higher order chromatin structure establishes domains that organize the genome and coordinate gene expression. However, the molecular mechanisms controlling transcription of individual loci within a topological domain (TAD) are not fully understood. The cystic fibrosis transmembrane conductance reg...

ORGANISM(S): Homo sapiens

2016-01-07 | E-GEOD-74709 | biostudies-arrayexpress

DCLK1 Drives EGFR-TKI-Acquired Resistance in Lung Adenocarcinoma by Remodeling the Epithelial-Mesenchymal Transition Status.

Not available

S-EPMC10216632 | biostudies-literature

Tidal filtering drives microbiome assembly and metabolic coupling in desiccation-tolerant red algae

This study investigates how the intertidal red alga Pyropia haitanensis (Bangiophyceae) achieves rapid desiccation-rehydration tolerance through coordinated interactions between the host, its associated microbiome, and key metabolites. By integrating 16S rRNA amplicon sequencing, metag...

2026-05-07 | MTBLS13613 | MetaboLights

Multiple biochemical indices and metabolomics of Clonorchis sinensis provide a novel interpretation of biomarkers

BACKGROUND: Clonorchiasis, an infectious disease caused by the liver fluke Clonorchis sinensis, may lead to the development of liver and gallbladder diseases, and even cholangiocarcinoma (CCA). However, the pathogenesis, host-pathogen interaction, and diagnostic markers ...

2022-06-24 | MTBLS3306 | MetaboLights

AI-Based Quantitative HRCT for In-Hospital Adverse Outcomes and Exploratory Assessment of Reinfection in COVID-19.

Not available

S-EPMC12732024 | biostudies-literature

All-Trans Retinoic Acid Ameliorates Myocardial Ischemia/Reperfusion Injury by Reducing Cardiomyocyte Apoptosis.

Not available

S-EPMC4506146 | biostudies-literature

Osteocalcin Levels in Male Idiopathic Hypogonadotropic Hypogonadism: Relationship With the Testosterone Secretion and Metabolic Profiles.

Not available

S-EPMC6798147 | biostudies-literature