Yang Xue X - OmicsDI

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Unknown (2416)
Proteomics (88)
Metabolomics (22)
Transcriptomics (17)
Genomics (11)

Organisms

Homo sapiens (48)
Archaea (25)
Bacteria (25)
Betaherpesvirinae (25)
Borrelia (25)
Botrytis cinerea (25)
Mus musculus (17)
Rattus norvegicus (3)
Babesia microti (2)
Tomato yellow leaf curl China virus (1)
Streptococcus mutans UA159 (1)
uncultured bacterium (1)
Solanum habrochaites (1)
Oryza sativa (1)
Saccharomyces cerevisiae (1)
Arabidopsis thaliana (1)
Bubalus bubalis (1)
Cancer (1)
Escherichia coli (1)
Haemaphysalis longicornis (1)
Isatis tinctoria (1)
Macaca fascicularis fascicularis (1)
Magallana gigas (1)
Mus (1)
Mycobacteroides abscessus ATCC 19977 (1)
Nicotiana tabacum (1)
Pichia kudriavzevii (1)
Pseudomonas aeruginosa (1)
Rattus rattus (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Organisms

Sus scrofa (1)
Rattus norvegicus (1)

Repository

iProX (63)
pride (25)
MetaboLights (22)
biostudies-arrayexpress (17)
EGA (8)
ENA (2)
geo (1)

Tissue

Cell culture (5)
Epithelial cell (3)
Liver (3)
Blood cell (2)
Blood plasma (2)
Kidney (2)
Lung (2)
Blood serum (1)
Brain (1)
Leaf (1)
Neural cell (1)
Pituitary gland (1)
Plant cell (1)
Sperm (1)
Testis (1)
Thyroid gland (1)

Disease

Acute leukemia (2)
Breast cancer (2)
Disease free (1)
Malignant neoplasm of ovary (1)
Neuroblastoma (1)

Technology Type

Mass Spectrometry (25)
Mass spectrometry (19)
Shotgun proteomics (15)
Bottom-up proteomics (3)
Data-dependent acquisition (3)
Illumina HiSeq 2000, ILLUMINA (2)
Mass spectrometry assay (2)
Top-down proteomics (2)
NMR spectroscopy (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (14)
Liquid Chromatography MS - negative - reverse phase (13)
Liquid Chromatography MS - positive - hilic (2)
Quattro micro API (Waters) (1)
Liquid Chromatography MS - negative – rp (1)
Liquid Chromatography MS - positive – rp (1)
Ultra-High Performance Liquid Chromatography-Q Exactive Plus MS&MS/MS-Negative(UHPLC-MS&MS/MS(Negative))(Thermo Scientific) (1)
Ultra-High Performance Liquid Chromatography - Time Of Flight MS - Negative (UPLC-TOF MS(Negative)) (Waters) (1)
Agilent 7890 (1)
7000C Triple Quadrupole GC/MS (Agilent) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Bruker (1)
API 4000 QTRAP (AB Sciex) (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2023 (17)
2022 (14)
2021 (12)
2024 (11)
2020 (11)
2025 (7)
2026 (6)
2018 (5)
2015 (4)
2014 (4)
2019 (4)
2013 (3)
2010 (3)
2017 (3)
2016 (2)
2011 (2)
2004 (1)

CHEBI ID

CHEBI:16704 (11)
CHEBI:17368 (11)
CHEBI:16750 (9)
CHEBI:16196 (9)
CHEBI:17596 (9)
CHEBI:17351 (9)
CHEBI:30769 (9)
CHEBI:28875 (8)
CHEBI:17154 (8)
CHEBI:17620 (8)
CHEBI:7916 (8)
CHEBI:17295 (8)
CHEBI:15756 (8)
CHEBI:17521 (7)
CHEBI:17992 (7)
CHEBI:28635 (7)
CHEBI:16450 (7)
CHEBI:16040 (7)
CHEBI:22652 (7)
CHEBI:16811 (7)
CHEBI:16708 (7)
CHEBI:16610 (7)
CHEBI:15741 (7)
CHEBI:30746 (7)
CHEBI:17821 (7)
CHEBI:16566 (7)
CHEBI:16335 (7)
CHEBI:17568 (7)
CHEBI:15891 (7)
CHEBI:27897 (7)

Metabolite Name

Oleic acid (6)
Sucrose (6)
Uracil (5)
Adenine (5)
L-Phenylalanine (5)
Hypoxanthine (5)
Ethyl glucuronide (4)
16-Hydroxy hexadecanoic acid (4)
Benzoic acid (4)
Maleic acid (4)
Indole (4)
Citric acid (4)
Adenosine (4)
Spermidine (4)
Cytosine (4)
Linoleic acid (4)
Guanosine (4)
Thymidine (4)
Uridine (4)
N5-Acetyl-N2-gamma-L-glutamyl-L-ornithine (3)
Threo-Syringoylglycerol (3)
Theasapogenol A (3)
L-Phosphoarginine (3)
(2S,4S)-Monatin (3)
3-Nitrotyrosine (3)
Hexyl glucoside (3)
Bisacurone epoxide (3)
Lithocholyltaurine (3)
Promazine 5-sulfoxide (3)
9S,11R,15S-trihydroxy-2,3-dinor-13E-prostaenoic acid-cyclo[8S,12R] (3)

First Public Date

2022 (1)
2014 (1)

Study type

Transcription profiling by array (6)
RNA-seq of coding RNA (3)
Comparative genomic hybridization by array (2)
Other (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (450)
2023 (329)
2022 (328)
2024 (325)
2021 (233)
2020 (186)
2019 (125)
2018 (99)
2017 (75)
2016 (59)
2026 (52)
2015 (50)
2014 (41)
2013 (18)
2010 (16)
2011 (13)
2012 (12)
2009 (5)
2006 (5)
2007 (4)
2008 (3)
2005 (2)
2002 (2)
2001 (1)

Lab affiliation

Department of Clinical Laboratory, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (3)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Shanghai Institute of Thoracic Tumors, Shanghai Chest Hospital, Shanghai, 200030, China. (lab head) (2)
1. Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2. University of Chinese Academy of Sciences, Beijing 100049, China (1)
Beijing proteome research center (1)
Bioheat and mass transfer laboratory, Med-X Research Institute, Shanghai Jiao Tong University (1)
Cancer Program, Monash Biomedicine Discovery Institute, Clayton, VIC 3800, Australia. Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia. (1)
Cancer Stem Cell and Translation Medicine Lab, Innovative Cancer Drug Research and Development Engineering Center of Liaoning Province, Department of Oncology, Shengjing Hospital of China Medical University, Shenyang, 110004, China (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Department of Clinical Laboratory, National Center for Respiratory Medicine, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong 510120, China. (1)
Department of Immunology, School of Basic Medical Sciences, Peking University (1)
Department of Medicine & Pharmacy Research Center, Binzhou Medical University, Yantai, Shandong, P. R. China, 264003 (1)
Department of Nephrology, the First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan, China (1)
Fudan University Shanghai Cancer Center, Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China. International Co-operation Laboratory on Signal Transduction, Eastern Hepatobiliary Surgery Institute/National Center for Liver Cancer, Naval Medical University. 225 Changhai Road, 200438 Shanghai, China. (1)
Guangdong Institute of Microbiology, Guangdong Academy of Sciences (1)
Henan Institute of Medical and Pharmaceutical Sciences, Zhengzhou University (1)
Institute of Basic Medical Sciences Chinese Academy of Medical Sciences (1)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009,China (1)
Key Laboratory of Molecular Biophysics of Ministry of Education, College of Life Science and Technology and the Collaborative Innovation Center for Brain Science, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China (1)
MOE Key Laboratory of Tumor Molecular Biology and State Key Laboratory of Bioactive Molecules and Druggability Assessment, Institute of Life and Health Engineering, Jinan University, Guangzhou, China (1)
School of Life Sciences and Technology, Tongji University (1)

Tags

xref:PubMed:15150374 (1)

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Metabolomic insights into the browning of the peel of bagging 'Rui Xue' apple fruit

BACKGROUND: Bagging is one of the most important techniques for the production of high-quality fruits. In the act of cultivation, we found a new kind of browning in peel of the apple fruit that occurs before harvest and worsens during the storage period. There are many studies on...

2021-04-09 | MTBLS2384 | MetaboLights

The subfamily Xerocomoideae (Boletaceae, Boletales) in China.

Not available

S-EPMC10825750 | biostudies-literature

Optimization of Extraction Technology of Majun Mupakhi Ela and its Effect on Hydrocortisone-induced Kidney Yang Deficiency in Mice.

Not available

S-EPMC6420599 | biostudies-literature

Building microbial consortia to enhance straw degradation, phosphorus solubilization, and soil fertility for rice growth.

Not available

S-EPMC11337586 | biostudies-literature

Transcriptome Profiling of A549 Xenografts of Nonsmall-cell Lung Cancer Treated with Qing-Re-Huo-Xue Formula.

Not available

S-EPMC9507736 | biostudies-literature

Sheng Xue Ning as a Novel Agent that Promotes SCF-Driven Hematopoietic Stem/Progenitor Cell Proliferation to Promote Erythropoiesis.

Not available

S-EPMC11429878 | biostudies-literature

The delta subunit of RNA polymerase, RpoE, is a global modulator of Streptococcus mutans environmental adaptation

Transcriptional profiling of S. mutans rpoE knockout mutant comparing to the wild type. The mutation of rpoE cause dramatic changes in phenotypes. The goal is to determine the genes affected by rpoE. The delta subunit of RNA polymerase, RpoE, is wide spread in low G+C Gram-positive bacteria and is t...

ORGANISM(S): Streptococcus mutans UA159

2010-09-21 | E-GEOD-22333 | biostudies-arrayexpress

Hepatic expression of Yin Yang 1 (YY1) is associated with the non-alcoholic fatty liver disease (NAFLD) progression in patients undergoing bariatric surgery.

Not available

S-EPMC6171305 | biostudies-literature

LGR4 modulates breast cancer initiation, metastasis, and cancer stem cells.

Not available

S-EPMC5901378 | biostudies-literature

Hydrazine solution processed Sb2S3, Sb2Se3 and Sb2(S(1-x)Se(x))3 film: molecular precursor identification, film fabrication and band gap tuning.

Not available

S-EPMC4455288 | biostudies-literature