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GenomicsHistone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors [ChIP-seq]
Cell type-specific master transcription factors (MTFs) play vital roles in defining cell identity and function. However, the roles ubiquitous factors play in the specification of cell identity remain underappreciated. Here we show that all three subunits of the ubiquitous heterotrimeric CCAAT-bindin...
ORGANISM(S): Mus musculus 
2014-08-14 | E-GEOD-56839 | biostudies-arrayexpress
no omics definedTranscription profiling of Yersinia pestis wild type and phoP deletion strains
Microarrays were used to identify Y. pestis genes that are transcriptional targets of phoP. RNA samples were isolated from cultures of two isogenic Y. pestis strains, one carrying wild-type phoP (KIM6+) and the other carrying a deletion within phoP (KIM6+phoP(delta)), and their gene expression prof...
ORGANISM(S): Yersinia pestis 
2006-07-01 | E-MEXP-713 | biostudies-arrayexpress
TranscriptomicsPhenotypic and transcriptional analysis of the osmotic regulator OmpR in Yersinia pestis
Background The osmotic regulator OmpR in Escherichia coli regulates differentially the expression of major porin proteins OmpF and OmpC. In Yersinia enterocolitica and Y. pseudotuberculosis, OmpR is required for both virulence and survival within macrophages. However, the phenotypic and regulatory r...
ORGANISM(S): Yersinia pestis 
2011-10-23 | E-GEOD-26601 | biostudies-arrayexpress
no omics definedTranscription profiling of Yersinia pestis overexpressing phoP
Microarrays were used to identify Y. pestis genes that are differentially regulated under conditions of phoP overexpression. RNA samples were isolated from cultures of two isogenic Y. pestis strains, one overexpressing phoP (KIM10+phoP(delta)/PhoP) and the other not (KIM10+phoP(delta)/MMB67EH), and ...
ORGANISM(S): Yersinia pestis 
2006-07-01 | E-MEXP-712 | biostudies-arrayexpress
ProteomicsDifferentially expressed proteins between WT Y. pestis and ΔhmwC
Differentially expressed proteins between WT Y. pestis and ΔhmwC
ORGANISM(S): Yersinia Pestis Co92 
PXD042928 |
ProteomicsComprehensive profiling of lysine acetylome in Yersinia pestis
Yersinia pestis is a lethal pathogen responsible for millions of human deaths in three worldwide pandemics.The global acetylome analyses of Y. pestis grown under conditions mimicking two typical niches, i.e., the mammalian host (Mh) and the flea vector (Fv), were performed.
ORGANISM(S): Yersinia Pestis Biovar Microtus Str. 91001 
2023-07-06 | PXD038124 |
UnknownThe complete chloroplast genome sequence of Huperzia javanica (sw.) C. Y. Yang in Lycopodiaceae.
Not available
S-EPMC7800581 | biostudies-literature
UnknownGenetic basis of Y-linked hearing impairment.
Not available
S-EPMC3567277 | biostudies-literature
TranscriptomicsTranscription profiling of mouse germline during spermatogenesis reveals X and Y occupy a novel compartment in the post-meiotic spermatid and adopt a non-Rabl configuration
In mammals, the X and Y chromosomes are subject to meiotic sex chromosome inactivation (MSCI) during prophase I in the male germline, but their status thereafter is currently unclear. An abundance of X-linked spermatogenesis genes has spawned the view that the X must be active [1-8]. On the other ha...
ORGANISM(S): Mus musculus 
2007-12-07 | E-GEOD-4193 | biostudies-arrayexpress
UnknownFirst-Principles Study of Penta-PtXY (X = Se, Te; Y = S, Te; X = Y) Monolayer with Highly Anisotropic Electronic and Optical Properties.
Not available
S-EPMC11292839 | biostudies-literature
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