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TranscriptomicsArabidopsis circadian regulatory networks
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Arabidopsis thaliana 
2013-08-02 | E-GEOD-46741 | biostudies-arrayexpress
TranscriptomicsRNA-seq of circadian timeseries sampling (LL2-3) of 13-14 day old Arabidopsis thaliana Col-0 (24 h to 68 h, sampled every 4 h)
The experiment was designed to get high throughput mRNA data (for gene expression and alternative splicing analysis) of A. thaliana 13-14 day old plants, over the course of two days after 24h of transfer to free running (circadian) conditions. Briefly, plants were grown in MS plates (30 plants per p...
ORGANISM(S): Arabidopsis thaliana 
2020-04-02 | E-MTAB-7933 | biostudies-arrayexpress
TranscriptomicsAcute effects of light on alternative splicing in light-grown plants
We report the results of a genome-wide analysis of AS in Arabidopsis thaliana plants exposed to a 2h light pulse given in the middle of the night, a treatment that simulates the effects of early dawn or late dusk signals. This light affects the plant transcriptome at multiple regulatory layers, and...
ORGANISM(S): Arabidopsis thaliana 
2016-08-09 | E-GEOD-68560 | biostudies-arrayexpress
TranscriptomicsRNA-seq of atspf30-1 vs Col-0 seedlings grown in LL conditions.
The purpose of this experiment was to compare alternative splicing (AS) differences between a mutant line of SPF30 (atspf30-1) and it wild type genomic background (Col-0)
ORGANISM(S): Arabidopsis thaliana 
2020-04-02 | E-MTAB-8667 | biostudies-arrayexpress
TranscriptomicsGenome-wide analysis of LINK1 and LINK2 effects on the Arabidopsis transcriptome
The goal of this study was to compare the transcriptional profile (RNA-seq) of wild type plants with that of link1link2 double mutants grown under continous light or long day (16h light/8 h darkness) conditions. In the first experiment wild-type and link1link2 mutant plants were grown for two weeks ...
ORGANISM(S): Arabidopsis thaliana 
2013-08-02 | E-GEOD-43865 | biostudies-arrayexpress
TranscriptomicsExpression data from Wild type (WT) and AtCBF1 OX potato plants exposed to different abiotic stresses
Potato plants are sensitive to multiple abiotic stresses such as drought, low temperature and high light. We analyzed the transcriptome of WT potato plants as well as that of transgenic potato plants expressing the Arabidopsis stress related transcription factor CBF1 that confers tolerance to multip...
ORGANISM(S): Solanum tuberosum 
2015-03-01 | E-GEOD-61004 | biostudies-arrayexpress
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