Yates B B - OmicsDI

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Proteomics (93)
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Genomics (32)
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Organisms

Homo sapiens (71)
Mus musculus (25)
Rattus norvegicus (8)
Saccharomyces cerevisiae (5)
Caenorhabditis elegans (4)
Schizosaccharomyces pombe (4)
Oncorhynchus mykiss (3)
Arabidopsis thaliana (3)
Ixodes scapularis (3)
Amblyomma americanum (2)
Escherichia coli (2)
Fasciola hepatica (2)
Aspergillus flavus (1)
Leishmania donovani (1)
Bacillus anthracis (1)
Medicago truncatula (1)
Plasmodium falciparum 3D7 (1)
Drosophila melanogaster (1)
Bacillus subtilis (1)
Bacteria (1)
Bacteroides thetaiotaomicron VPI-5482 (1)
Clostridium botulinum F str. Langeland (1)
Clostridium botulinum str. LANGELAN F (1)
Colinus virginianus (1)
Geobacillus kaustophilus HTA426 (1)
Human immunodeficiency virus (1)
Onchocerca volvulus (1)
Oryctolagus cuniculus (1)
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Phoneutria nigriventer (1)

Organisms

Mus musculus (1)

Repository

pride (62)
biostudies-arrayexpress (53)
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Technology Type

Mass Spectrometry (62)
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Instrument Platform

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Illumina HiSeq 2000 (1)
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Publication Date

2023 (15)
2025 (13)
2022 (12)
2020 (12)
2016 (10)
2015 (10)
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2018 (9)
2019 (8)
2013 (7)
2012 (7)
2017 (7)
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2014 (5)
2010 (5)
2021 (4)
2011 (3)
2008 (3)
2009 (2)
2006 (1)
2004 (1)
2002 (1)

CHEBI ID

CHEBI:15741 (2)
CHEBI:16108 (2)
CHEBI:17050 (2)
CHEBI:18012 (2)
CHEBI:22660 (2)
CHEBI:30769 (2)
CHEBI:4170 (2)
CHEBI:48928 (2)
CHEBI:6650 (2)
CHEBI:131440 (1)
CHEBI:132744 (1)
CHEBI:132785 (1)
CHEBI:136629 (1)
CHEBI:137157 (1)
CHEBI:138426 (1)
CHEBI:138517 (1)
CHEBI:138522 (1)
CHEBI:139131 (1)
CHEBI:141521 (1)
CHEBI:145278 (1)
CHEBI:15351 (1)
CHEBI:15361 (1)
CHEBI:15428 (1)
CHEBI:15676 (1)
CHEBI:15702 (1)
CHEBI:15721 (1)
CHEBI:15756 (1)
CHEBI:15843 (1)
CHEBI:15971 (1)
CHEBI:15978 (1)

Metabolite Name

6-phosphogluconic acid (2)
Citrate (2)
Dihydroxyacetone phosphate (2)
Glucose 6-phosphate (2)
Phosphoenolpyruvate (2)
1-Oleoylglycerophosphoserine (1)
1-dimethylisopropylsilyloxy-3-methylbut-2-ene (1)
16-Hydroxy hexadecanoic acid (1)
19-(3-methyl-butanoyloxy)-villanovane-13alpha,17-diol (1)
2,4-dihydroxybutyric acid (1)
2-methoxyhydroquinone (1)
3-O-caffeoyl-quinic acid (1)
3-phosphoglycerate (1)
3-phosphoglyceric acid (1)
3a,7a,12b-Trihydroxy-5b-cholanoic acid (1)
3b,12a-Dihydroxy-5a-cholanoic acid (1)
3beta-(3-methyl-butanoyloxy)-villanovane-13alpha,17-diol (1)
4-O-B-D-glucopyranosylvanillic acid (1)
4-hydroxybenzoate (1)
4-methoxyresorcinol-1-O-glucoside (1)
5-oxo-proline (1)
7-Sulfocholic acid (1)
Acrimarine J (1)
Allolithocholic acid (1)
Alpha-ketoglutaric acid (1)
Americine (1)
Arachidonic acid (1)
Aspartic acid (1)
B-cyano-alanine (1)
B-sitosterol (1)

First Public Date

2013 (1)

Study type

Transcription profiling by array (24)
RNA-seq of coding RNA (13)
ChIP-seq (4)
RNA-seq of total RNA (3)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
Methylation profiling by array (2)
Animal - High-throughput sequencing (1)
Other (1)

Release Date

2022 (120)
2021 (107)
2023 (97)
2025 (90)
2024 (80)
2020 (74)
2018 (59)
2019 (58)
2015 (45)
2014 (35)
2016 (34)
2012 (34)
2017 (29)
2011 (25)
2013 (24)
2010 (22)
2009 (12)
2008 (11)
2026 (8)
2006 (3)
2004 (3)
2007 (3)
2002 (2)
2005 (1)
2003 (1)
2001 (1)

Lab affiliation

Division of Genetic and Genomic Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA (3)
Assistant Professor Department of Molecular and Experimental Medicine TSRI - California Campus USA (2)
Cologne Excellence Cluster for Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Joseph Stelzmann Strasse 26, 50931 Cologne, Germany. (2)
Department of Biochemistry and Molecular Biology; and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, VIC 3010. Australia (2)
Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX, USA (2)
Imperial College London (2)
Assistant Professor Department of Molecular and Experimental Medicine TSRI - California Campus USA (1)
Assistant Professor of Medicine Department of Medicine Tulane University School of Medicine 1430 Tulane Avenue, New Orleans, LA,70114 (1)
Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia (1)
CSIR- Institute of Microbial Technology, Chandigarh (1)
Centro de Biotecnologia Universidade Federal do Rio Grande do Sul (1)
Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil (1)
Department of Biochemistry and Cell Biology; Rice University; Houston, TX USA (1)
Department of Biosciences, Durham University Durham, UK (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
Department of Cell and Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA-92037 (1)
Department of Medical Biochemistry and Cell Biology, University of Gothenburg, Gothenburg, Sweden (1)
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA (1)
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA Department of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, USA (1)
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, California 92037 United States (1)
Department of Molecular and Experimental Medicine, Department of Chemical Physiology, The Scripps Research Institute, USA (1)
Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA. (1)
Department of Reumotology, Allegy and immunology (1)
Department of Veterinary Pathobiology College of Veterinary Medicine Texas A & M University College Station Texas USA ( lab head ) (1)
Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, Texas,United States of America (1)
Director, Duke Molecular Physiology Institute, Professor Departments of Medicine (Division of Endocrinology, Metabolism, and Nutrition) and Pharmacology & Cancer Biology Duke University Medical Center (1)
Environmental Laboratory US Army Engineer Research and Development Center Vicksburg, MS 39180, USA (1)
Faculdade de Veterinária, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil (1)
Fred Hutch Cancer Center, Human Biology Division (1)
ISSCOR / UCSD (1)

Tags

xref:PubMed:17486137 (1)

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Genome Wide Analysis of Immune Activation in Human T and B Cells Reveals Distinct Classes of Alternatively Spliced Genes

Alternative splicing of pre-mRNA is a mechanism that increases the protein diversity of a single gene by differential exon inclusion during post-transcriptional processing. While alternative splicing is established to occur during lymphocyte activation, little is known about the role it plays during...

ORGANISM(S): Homo sapiens

2010-04-08 | E-GEOD-14352 | biostudies-arrayexpress

Bacillus subtilis inhibits African swine fever virus infection in vivo and in vitro based on its metabolites arctiin and genistein interfering with the function of viral topoisomerase II

African swine fever virus (ASFV) is an infectious disease with a mortality rate of nearly 100% in pigs; however, no safe commercial vaccines or antiviral drugs are currently available, which seriously threatens the global pig industry. Therefore, effective biologicals against ASFV are urgently ne...

2023-11-01 | MTBLS6586 | MetaboLights

Fate Mapping Quantifies the Dynamics of B Cell Development and Activation throughout Life.

Not available

S-EPMC8622872 | biostudies-literature

Murine Glucocorticoid Receptors Orchestrate B Cell Migration Selectively between Bone Marrow and Blood.

Not available

S-EPMC7369236 | biostudies-literature

Comparison of gene expression profiles of naÃ¯ve and in vitro effector CD8+ T cells from wild-type and BATF-/- mice

The transcription factor BATF is required for Th17 and TFH differentiation. Here, we show that BATF also has a fundamental role in regulating effector CD8+ T cell differentiation. BATF-deficient CD8+ T cells show profound defects in effector expansion and undergo proliferative and metabolic catastr...

ORGANISM(S): Mus musculus

2014-03-02 | E-GEOD-54215 | biostudies-arrayexpress

ChIP-Seq analysis of BATF, IRF4, the Jun proteins, and histone modifications in effector CD8+ T cells

ORGANISM(S): Mus musculus

2014-03-02 | E-GEOD-54191 | biostudies-arrayexpress

Characterization of extramedullary disease in B-ALL and response to CAR T-cell therapy.

Not available

S-EPMC9006258 | biostudies-literature

TGF-β upregulates CD70 expression and induces exhaustion of effector memory T cells in B-cell non-Hodgkin's lymphoma.

Not available

S-EPMC4145058 | biostudies-literature

Development of ALL-Hematotox: predicting post-CAR T-cell hematotoxicity in B-cell acute lymphoblastic leukemia.