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TranscriptomicsTranscriptional Response of 0.1%YE-grown M. sedula cells to ferrous sulfate
(from abstract): Iron oxidation is a desirable trait of biomining microorganisms, although the mechanism is not well-understood in extreme thermoacidophiles. The complete genome sequence of the extremely thermoacidophilic archaeon Metallosphaera sedula DSM 5348 (2.2 Mb, ~2300 ORFs) provides insights...
ORGANISM(S): Metallosphaera sedula 
2008-05-02 | E-GEOD-11296 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse mammary tumour samples derived from our MMTV/neundl-NYPD, -YB, -YC, -YD, -YE and the parental MMTV/neu NDL2-5 strains
ErbB-2 overexpression and amplification occurs in 15 - 30% of human invasive breast carcinomas associated with poor clinical prognosis. Previously, we have demonstrated that four ErbB-2/Neu tyrosine-autophosphorylation sites within the cytoplasmic tail of the receptor recruit distinct adaptor pro...
ORGANISM(S): Mus musculus 
2008-06-15 | E-GEOD-7595 | biostudies-arrayexpress
TranscriptomicsTranscriptional profile of an eca39∆ mutant fission yeast
An branched-chain amino acids auxotroph eca39∆ mutant fission yeast exhibits an unusual adaptive growth phenotype on solid minimal media containing Ile, Leu and Val when other strains are growing nearby. The transcriptional profiles of an eca39∆ mutant before and after the adaptation were determined...
ORGANISM(S): Schizosaccharomyces pombe 
2012-09-21 | E-GEOD-29355 | biostudies-arrayexpress
MetabolomicsA Comprehensive and Ultrasensitive Isotope Calibration Method for Soil Amino Compounds Using Orbitrap Mass Spectrometry
Bound amino compounds (amino acid and amino sugar polymers) comprise a significant proportion (~40%) of soil organic nitrogen and therefore represent an essential source of nitrogen for plant and microbial nutrition. The analysis of their content and isotope enrichment still represents a significant...
2025-06-16 | MTBLS12550 | MetaboLights
TranscriptomicsRecognition and fine genetic mapping of the golden pod gene (pv-ye) from the common bean (Phaseolus vulgaris L.)
The pod is the main edible part of Phaseolus vulgaris L. (common bean). The commercial use of the pods is mainly affected by their color. Consumers seem to prefer golden pods. However, planters suffer economic losses because of pod color instability. The aim of the present study was to identify the ...
ORGANISM(S): Phaseolus vulgaris 
2020-10-12 | GSE159374 | GEO
MetabolomicsMetabolic phenotyping of urine from a dementia research cohort
To better understand the molecular mechanisms underpinning physiological variation in human populations, metabolic phenotyping approaches are increasingly being applied to studies involving hundreds and thousands of biofluid samples. Hyphenated ultra-performance liquid chromatography-mass spectromet...
2022-03-01 | MTBLS719 | MetaboLights
ProteomicsA Breast Cancer Stem Cell Niche Supported by Juxtacrine Signaling from Monocytes and Macrophages
Lu H, Clauser KR, Tam WL, Fröse J, Ye X, Eaton EN, Reinhart F, Donnenberg VS, Bhargava R, Carr SA, Weinberg RA, Nature Cell Biol 2014 in press
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2014-08-04 | MSV000078799 | MassIVE
MetabolomicsSpermine is a natural suppressor of AR signaling in castration-resistant prostate cancer
In castration-resistant prostate cancer (CRPC), clinical response to androgen receptor (AR) antagonists is limited mainly due to AR-variants expression and restored AR signaling. The metabolite spermine is most abundant in prostate and it decreases as prostate cancer progresses, but its functions re...
2023-10-11 | MTBLS8034 | MetaboLights
ProteomicsSensitive profiling of cell surface proteome by using an optimized biotinylation method
Sensitive profiling of cell surface proteome by using an optimized biotinylation method
ORGANISM(S): Homo Sapiens (human) 
2023-02-02 | PXD039794 | JPOST Repository
GenomicsRecognition and fine genetic mapping of the golden pod gene (pv-ye) from the common bean (Phaseolus vulgaris L.)
Recognition and fine genetic mapping of the golden pod gene (pv-ye) from the common bean (Phaseolus vulgaris L.)
PRJNA668634 | ENA
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