Ye Ding D - OmicsDI

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Unknown (445)
Proteomics (14)
Transcriptomics (5)
Metabolomics (4)
Genomics (1)

Organisms

Homo sapiens (11)
Mus musculus (2)
Andropogon gerardi (2)
Bacteria (2)
Botrytis cinerea (2)
Canis lupus familiaris (2)
Clostridium perfringens (2)
Cnidaria (2)
Cricetulus griseus (2)
Eukaryota (2)
Fasciola (2)
Hepatitis B virus (2)
Human betaherpesvirus 5 (2)
Japanese encephalitis virus group (2)
Madurella mycetomatis (2)
Mesocricetus auratus (2)
Miscanthus x giganteus (2)
Mycobacterium tuberculosis (2)
Orthoflavivirus (2)
Panicum virgatum (2)
Platyhelminthes (2)
Pseudomonas aeruginosa AES-1R (2)
Rickettsia (2)
Saccharomyces cerevisiae (2)
Schizosaccharomyces pombe (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Bursaphelenchus xylophilus (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Danio rerio (1)
Macaca fascicularis fascicularis (1)

Repository

iProX (11)
biostudies-arrayexpress (6)
MetaboLights (4)
pride (2)
MassIVE (1)

Tissue

Cell culture (1)
Epithelial cell (1)

Disease

Breast cancer (1)

Technology Type

Mass spectrometry (4)
Mass Spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (2)
Retsch MM400 (1)
Illumina HiSeq 2500 (1)
Q Exactive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2023 (5)
2022 (4)
2016 (2)
2014 (2)
2024 (2)
2019 (2)
2013 (1)
2012 (1)
2021 (1)

CHEBI ID

CHEBI:15729 (3)
CHEBI:16610 (3)
CHEBI:15843 (3)
CHEBI:55328 (3)
CHEBI:15971 (3)
CHEBI:19229 (2)
CHEBI:28718 (2)
CHEBI:16974 (2)
CHEBI:27410 (2)
CHEBI:1015 (2)
CHEBI:39713 (2)
CHEBI:86534 (2)
CHEBI:28806 (2)
CHEBI:69440 (2)
CHEBI:73040 (2)
CHEBI:21803 (2)
CHEBI:28281 (2)
CHEBI:42539 (2)
CHEBI:47925 (2)
CHEBI:72794 (2)
CHEBI:143235 (2)
CHEBI:16390 (2)
CHEBI:137347 (2)
CHEBI:31835 (2)
CHEBI:35825 (2)
CHEBI:36090 (2)
CHEBI:72999 (2)
CHEBI:16217 (2)
CHEBI:82913 (2)
CHEBI:33569 (2)

Metabolite Name

2'-O-methylguanosine (2)
N-acetyl-DL-tryptophan (2)
Daidzein (2)
L-Ornithine (2)
Pyridoxine (2)
Docosahexaenoic acid (2)
Arachidonic acid (2)
Adenosine (2)
Spermidine (2)
Guanine (2)
Uric acid (2)
Biotin (2)
Creatinine (2)
Creatine (2)
Inosine (2)
Hypoxanthine (2)
3-acetyl-11-keto-beta-boswellic acid (1)
1-linoleoyl glycerol (1)
3-methyl-2-oxindole (1)
2-trans-hexadecenoic acid (1)
Rac-glycerol 1-myristate (1)
Methyl 2-hydroxy-4-{3-[(4-oxo-3-phenyl-4h-chromen-7-yl)oxy]propoxy}-3-propylbenzoate (1)
Palmitelaidic acid methyl ester (1)
5-hydroxy-3-(hydroxymethyl)-6-isopropyl-2-oxo-3-cyclohexen-1-yl 3-methylpentanoate (1)
19-nortestosterone (1)
N-[2-(trifluoromethyl)phenyl]pyrrolidine-1-carbothioamide (1)
7-hydroxytestosterone (1)
4-(methylthio) aniline (1)
Methyl 4-(aminocarbonyl)-n-cyanotetrahydropyridine-1(2H)-carbimidothioate (1)
Senkyunolide h (1)

Study type

Transcription profiling by array (3)
ChIP-seq (1)
RNA-seq of coding RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (54)
2022 (54)
2023 (52)
2020 (52)
2021 (48)
2024 (36)
2018 (27)
2016 (23)
2019 (21)
2015 (19)
2017 (17)
2014 (10)
2013 (10)
2012 (9)
2026 (9)
2011 (5)
2010 (3)
2008 (1)
2007 (1)

Lab affiliation

Ben May department of cancer research, The university of Chicago (1)
Helmholtz International Lab, State Key Laboratory of Microbial Technology, Shandong University (1)

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Regio- and Stereospecific Synthesis of Oridonin D-Ring Aziridinated Analogues for the Treatment of Triple-Negative Breast Cancer via Mediated Irreversible Covalent Warheads.

Not available

S-EPMC6388690 | biostudies-literature

Metabolomics analyses of cancer tissue from patients with colorectal cancer.

The alteration of metabolism is essential for the initiation and progression of numerous types of cancer, including colorectal cancer (CRC). Metabolomics has been used to study CRC. At present, the reprogramming of the metabolism in CRC remains to be fully elucidated. In the present study, comprehen...

2024-02-08 | MTBLS8090 | MetaboLights

Comparison of talaromycosis in HIV-infected patients with and without Talaromyces marneffei bloodstream infection.

Not available

S-EPMC12903667 | biostudies-literature

Vitamin D and Calcium Supplementation Reverses Tenofovir-Caused Bone Mineral Density Loss in People Taking ART or PrEP: A Systematic Review and Meta-Analysis.

Not available

S-EPMC9008884 | biostudies-literature

Oxymatrine Attenuates Dopaminergic Neuronal Damage and Microglia-Mediated Neuroinflammation Through Cathepsin D-Dependent HMGB1/TLR4/NF-κB Pathway in Parkinson's Disease.

Not available

S-EPMC7264119 | biostudies-literature

Spermine is a natural suppressor of AR signaling in castration-resistant prostate cancer

In castration-resistant prostate cancer (CRPC), clinical response to androgen receptor (AR) antagonists is limited mainly due to AR-variants expression and restored AR signaling. The metabolite spermine is most abundant in prostate and it decreases as prostate cancer progresses, but its functions re...

2023-10-11 | MTBLS8034 | MetaboLights

Changes in the cellular makeup of motor patterning circuits drive courtship song evolution in <i>Drosophila</i>.

Not available

S-EPMC10849698 | biostudies-literature

Changes in the cellular makeup of motor patterning circuits drive courtship song evolution in Drosophila.

Not available

S-EPMC11153019 | biostudies-literature

Ubiquitin D Promotes Progression of Oral Squamous Cell Carcinoma via NF-Kappa B Signaling.

Not available

S-EPMC8334351 | biostudies-literature

Identification of the role of autophagy-related TNFSF10/ hsa-let-7a-5p axis in vitiligo development and potential herbs exploring based on a bioinformatics analysis.

Not available