Ye J J - OmicsDI

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Unknown (17614)
Proteomics (430)
Transcriptomics (132)
Genomics (75)
Metabolomics (37)
Models (3)
Genomic (1)

Organisms

Homo sapiens (203)
Mus musculus (78)
Schizosaccharomyces pombe (12)
Daphnia pulex (9)
Arabidopsis thaliana (6)
Ovis aries (4)
Camponotus floridanus (3)
Bombyx mori (3)
Drosophila melanogaster (3)
Rattus norvegicus (3)
Oryctolagus cuniculus (2)
Harpegnathos saltator (2)
Zea mays subsp. mays (2)
Streptococcus suis (2)
Oryza sativa Japonica Group (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Vibrio parahaemolyticus RIMD 2210633 (2)
Bos grunniens (1)
Pyropia yezoensis (1)
Metallosphaera sedula (1)
Macaca mulatta (1)
Schizosaccharomyces pombe 972h- (1)
Oryza sativa Indica Group (1)
Streptomyces coelicolor (1)
Triticum aestivum (1)
Pseudomonas aeruginosa (1)
Saccharomyces cerevisiae (1)
1804623 (1)
Caenorhabditis elegans (1)
Camellia oleifera (1)

Organisms

Mus musculus (1)
Homo sapiens (1)

Repository

pride (262)
biostudies-arrayexpress (172)
iProX (145)
MetaboLights (36)
EGA (34)
MassIVE (14)
jPOST (5)
BioModels (3)
PeptideAtlas (3)
ENA (2)
dbGaP (1)
GNPS (1)
PAXDB (1)

Tissue

Cell culture (52)
Epithelial cell (17)
Whole body (13)
Brain (12)
Leaf (9)
Lung (8)
Blood (7)
Kidney (7)
Liver (7)
Heart (6)
T cell (6)
Blood plasma (5)
Macrophage (5)
Permanent cell line cell (5)
Colon (4)
Embryo (4)
Fibroblast (4)
Hepatocyte (4)
Plant cell (4)
Testis (4)
Blood serum (3)
Cell suspension culture (3)
Embryonic stem cell (3)
Ovary (3)
Posterior silk gland (3)
Primary cell (3)
Seed (3)
Others (2)
Anther (2)
Brain (1)

Disease

Disease free (9)
Breast cancer (5)
COVID-19 (5)
Acute leukemia (3)
Prostate adenocarcinoma (3)
Severe acute respiratory syndrome (3)
Chronic kidney disease (2)
Colon cancer (2)
Neuroblastoma (2)
Wounds and Injuries (2)
Adenocarcinoma (1)
Acute kidney failure (1)
Alzheimer's disease (1)
Amyotrophic lateral sclerosis (1)
Avian influenza (1)
Bacterial infectious disease (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Cystic fibrosis (1)
Diabetes mellitus (1)
Gastric adenocarcinoma (1)
Gastric ulcer (1)
IgA glomerulonephritis (1)
Inflammation (1)
Leukemia (1)
Liver cancer (1)
Lung cancer (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass Spectrometry (262)
Shotgun proteomics (147)
Mass spectrometry (30)
Bottom-up proteomics (29)
Affinity purification coupled with mass spectrometry proteomics (27)
Gel-based experiment (25)
Data-dependent acquisition (21)
Top-down proteomics (15)
Data-independent acquisition (12)
SWATH MS (12)
NMR spectroscopy (6)
Illumina HiSeq 2000 (3)
Affinity proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
MSE (2)
SRM/MRM (2)
Illumina HiSeq 2000, Illumina HumanOmni5-Quad and exome sequencing, ILLUMINA (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)
Glycoproteomics (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (14)
Liquid Chromatography MS - negative - reverse phase (11)
Q Exactive (5)
Gas Chromatography MS - (5)
Illumina HiSeq 2000 (4)
Nuclear Magnetic Resonance (NMR) - (4)
NextSeq 2000 (3)
Liquid Chromatography MS - alternating - hilic (3)
Agilent 7890A GC with 5975C inert XL MSD (2)
LTQ Orbitrap Velos (2)
Orbitrap Fusion Lumos (2)
LTQ Orbitrap (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Bruker (2)
Liquid Chromatography MS - alternating - reverse phase (2)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
Axon GenePix 4000B scanning hardware (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
MALDI Synapt G2-S HDMS (1)
Orbitrap Astral (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive HF (1)

Publication Date

2022 (82)
2024 (68)
2025 (60)
2023 (58)
2021 (51)
2026 (43)
2020 (35)
2019 (28)
2016 (27)
2012 (26)
2010 (26)
2013 (22)
2014 (20)
2017 (18)
2015 (17)
2018 (17)
2011 (16)
2009 (9)
2008 (5)
2007 (5)
2004 (5)
2005 (2)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

ENSEMBL ID

ENSG00000147251 (1)
ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:17596 (11)
CHEBI:17368 (11)
CHEBI:16704 (10)
CHEBI:18186 (9)
CHEBI:16449 (9)
CHEBI:15354 (9)
CHEBI:16811 (8)
CHEBI:24898 (8)
CHEBI:28044 (8)
CHEBI:27266 (8)
CHEBI:17405 (8)
CHEBI:18237 (8)
CHEBI:17568 (8)
CHEBI:15428 (8)
CHEBI:16919 (8)
CHEBI:17895 (8)
CHEBI:30769 (8)
CHEBI:22660 (7)
CHEBI:27823 (7)
CHEBI:15741 (7)
CHEBI:32816 (7)
CHEBI:16335 (7)
CHEBI:27897 (7)
CHEBI:17295 (7)
CHEBI:18344 (7)
CHEBI:20067 (7)
CHEBI:6359 (6)
CHEBI:26271 (6)
CHEBI:17234 (6)
CHEBI:25017 (6)

Metabolite Name

Hypoxanthine (10)
Creatine (7)
Uracil (6)
Valine (6)
Methionine (6)
Choline (6)
Adenosine (6)
Proline (6)
Inosine (6)
Leucine (5)
Glycine (5)
Betaine (5)
L-Ornithine (5)
Taurine (5)
Docosahexaenoic acid (5)
Arachidonic acid (5)
Lysine (5)
Tyrosine (5)
Alanine (5)
Phenylalanine (5)
Palmitic acid (5)
Isoleucine (5)
Uridine (5)
Creatinine (5)
Lactulose (4)
7-Methylguanine (4)
Eicosapentaenoic acid (4)
L-Arginine (4)
Citric acid (4)
Spermidine (4)

First Public Date

2024 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (3)

Lab affiliation

College of Animal Sciences, Zhejiang University, Hangzhou, P. R. China (9)
Zhejiang University (5)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (3)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
CAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian 116023, China (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Department of Emergency Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (2)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 627-706, South Korea (2)
Division of Internal Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Fujian Agriculture and Forestry University (2)
Hangzhou Medical College (2)
Huazhong Agricultural University (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Institute of Animal Husbandry and Veterinary Sciences, Zhejiang Academy of Agricultural Sciences (2)
Jinan University (2)
Nanjing Agricultural University (2)
Professor, Department of Cellular and Molecular Pharmacology (2)
Robert W. Holley Center for Agriculture and Health United States Department of Agriculture Agricultural Research Service (2)
School of Pharmacy, UW-Madison (2)
Sencond Military Medical University (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
Shenzhen Hospital of Southern Medical University (2)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
University of Science and Technology of China (2)
Wiita Lab, Department of Laboratory Medicine, University of California San Francisco, USA (2)
1 Department of Cardiology, Zhongshan Hospital, Fudan University, Shanghai Institute of Cardiovascular Diseases, China. 2 Department of Cardiovascular Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)

IsPrivate

False (3)

Study type

Transcription profiling by array (59)
ChIP-seq (29)
RNA-seq of coding RNA (28)
ChIP-chip by tiling array (12)
RNA-seq of non coding RNA (8)
Transcription profiling by tiling array (5)
DNA-seq (5)
Methylation profiling by high throughput sequencing (5)
Comparative genomic hybridization by array (4)
Methylation profiling by array (4)
Unknown experiment type (2)
GRO-seq (1)
Transcription profiling by SAGE (1)
Cell line - One-color microarray (1)
Translation profiling (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
ATAC-seq (1)
Other (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (2766)
2022 (2367)
2023 (2238)
2024 (2146)
2021 (1840)
2020 (1294)
2019 (939)
2018 (774)
2017 (662)
2016 (590)
2015 (487)
2014 (372)
2026 (359)
2013 (237)
2012 (211)
2011 (135)
2010 (120)
2009 (80)
2008 (57)
2007 (34)
2006 (26)
2005 (17)
2004 (13)
2003 (7)
1999 (5)
2001 (4)
2002 (3)
2000 (3)

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Transcriptional Response of 0.1%YE-grown M. sedula cells to ferrous sulfate

(from abstract): Iron oxidation is a desirable trait of biomining microorganisms, although the mechanism is not well-understood in extreme thermoacidophiles. The complete genome sequence of the extremely thermoacidophilic archaeon Metallosphaera sedula DSM 5348 (2.2 Mb, ~2300 ORFs) provides insights...

ORGANISM(S): Metallosphaera sedula

2008-05-02 | E-GEOD-11296 | biostudies-arrayexpress

The tyrosine phosphatase SHP-2 dephosphorylated by ALV-J via its Env efficiently promotes ALV-J replication.

Not available

S-EPMC8237968 | biostudies-literature

MicroRNA-23b Promotes Avian Leukosis Virus Subgroup J (ALV-J) Replication by Targeting IRF1.

Not available

S-EPMC4434839 | biostudies-literature

HTGTS for Linear RAG Scanning Mediates Editing of Igκ Variable Region Repertoires

We performed HTGTS-V(D)J-seq in BM B cells and v-Abl transformed pro-B cells and its various mutant derivatives to study the molecular mechanisms of Igk secondary V(D)J recombination.

ORGANISM(S): Mus musculus

2026-02-23 | E-MTAB-16001 | biostudies-arrayexpress

Synergistic pathogenesis of chicken infectious anemia virus and J subgroup of avian leukosis virus.

Not available

S-EPMC8503663 | biostudies-literature

Gp37 Regulates the Pathogenesis of Avian Leukosis Virus Subgroup J via Its C Terminus.

Not available

S-EPMC7269434 | biostudies-literature

ALV-J GP37 molecular analysis reveals novel virus-adapted sites and three tyrosine-based Env species.

Not available

S-EPMC4388560 | biostudies-literature

Transcription profiling of mouse mammary tumour samples derived from our MMTV/neundl-NYPD, -YB, -YC, -YD, -YE and the parental MMTV/neu NDL2-5 strains

ErbB-2 overexpression and amplification occurs in 15 - 30% of human invasive breast carcinomas associated with poor clinical prognosis. Previously, we have demonstrated that four ErbB-2/Neu tyrosine-autophosphorylation sites within the cytoplasmic tail of the receptor recruit distinct adaptor pro...

ORGANISM(S): Mus musculus

2008-06-15 | E-GEOD-7595 | biostudies-arrayexpress

3'UTR of ALV-J can affect viral replication through promoting transcription and mRNA nuclear export.

Not available

S-EPMC10688361 | biostudies-literature

Metabolomics analysis of CEF cells infected with avian leukosis virus subgroup J based on UHPLC-QE-MS.

Not available

S-EPMC11017069 | biostudies-literature

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18293 Results

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