Ye Li L - OmicsDI

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Unknown (6004)
Proteomics (189)
Transcriptomics (72)
Metabolomics (34)
Genomics (29)
Models (2)
Genomic (1)

Organisms

Homo sapiens (120)
Mus musculus (32)
Drosophila melanogaster (4)
Rattus norvegicus (3)
Oryza sativa (3)
Oryctolagus cuniculus (2)
Harpegnathos saltator (2)
Bombyx mori (2)
Ovis aries (2)
Triticum aestivum (2)
Mycolicibacterium smegmatis MC2 51 (2)
Carthamus tinctorius (1)
unidentified microorganism (1)
Camponotus floridanus (1)
Citrus reticulata (1)
Chlorocebus aethiops (1)
Macaca mulatta (1)
Schizosaccharomyces pombe 972h- (1)
Acidiphilium sp. C61 (1)
Malus domestica (1)
Oryza sativa Indica Group (1)
Macaca fascicularis (1)
Pseudomonas aeruginosa (1)
Saccharomyces cerevisiae (1)
Cancer (1)
Candida albicans (1)
Canis lupus (1)
Canis lupus familiaris (1)
Macaca fascicularis fascicularis (1)
Pachycrepoideus vindemmiae (1)

Repository

pride (94)
biostudies-arrayexpress (88)
iProX (83)
MetaboLights (34)
EGA (13)
jPOST (5)
MassIVE (5)
BioModels (2)
dbGaP (1)
PAXDB (1)
PeptideAtlas (1)

Tissue

Cell culture (19)
Epithelial cell (8)
Blood (4)
Brain (4)
Heart (4)
Liver (4)
Blood plasma (3)
Colon (3)
Kidney (3)
Lung (3)
Testis (3)
Whole body (3)
B cell (2)
Cell suspension culture (2)
Embryonic stem cell (2)
Leaf (2)
Macrophage (2)
Permanent cell line cell (2)
Posterior silk gland (2)
Primary cell (2)
Brain (1)
Blood cell (1)
Embryo (1)
Epididymal white adipose tissue (1)
Erythrocyte (1)
Fat body (1)
Fruit body (1)
Gastric mucosa (1)
Gland (1)
HEK-293 cell (1)

Disease

Breast cancer (4)
Acute leukemia (2)
Colon cancer (2)
Disease free (2)
COVID-19 (1)
Cervical cancer (1)
Gastric ulcer (1)
Inflammation (1)
Multiple myeloma (1)
Polycystic Kidney (1)
Pulmonary tuberculosis (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (94)
Shotgun proteomics (45)
Mass spectrometry (26)
Bottom-up proteomics (19)
Data-dependent acquisition (9)
Gel-based experiment (9)
Top-down proteomics (8)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-independent acquisition (5)
NMR spectroscopy (4)
Mass spectrometry assay (4)
Affinity proteomics (2)
SWATH MS (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Glycoproteomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (15)
Liquid Chromatography MS - negative - reverse phase (13)
Illumina HiSeq 2000 (5)
Gas Chromatography MS - (4)
Q Exactive (3)
Nuclear Magnetic Resonance (NMR) - (3)
Liquid Chromatography MS - alternating - reverse-phase (3)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - alternating - reverse phase (2)
10X Chromium Controller (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1000 (1)
BGISEQ-500 (1)
Illumina HiSeq 4000 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - Alternating (LC-MS (Alt)) (1)
Bruker (1)
Xevo G2 QTOF (Waters) (1)
MS Imaging - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
LTQ Orbitrap (1)

Publication Date

2025 (35)
2024 (35)
2021 (32)
2022 (29)
2023 (27)
2026 (23)
2010 (19)
2019 (19)
2014 (18)
2020 (15)
2015 (14)
2016 (8)
2013 (8)
2012 (8)
2017 (6)
2007 (5)
2018 (5)
2005 (2)
2011 (2)
2009 (1)
2008 (1)
2003 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:17596 (9)
CHEBI:17368 (8)
CHEBI:18237 (7)
CHEBI:18186 (7)
CHEBI:16811 (7)
CHEBI:24898 (7)
CHEBI:6650 (7)
CHEBI:27266 (7)
CHEBI:16704 (7)
CHEBI:16919 (7)
CHEBI:17895 (7)
CHEBI:30769 (7)
CHEBI:16450 (6)
CHEBI:22660 (6)
CHEBI:15428 (6)
CHEBI:16610 (6)
CHEBI:15741 (6)
CHEBI:27823 (6)
CHEBI:17568 (6)
CHEBI:15891 (6)
CHEBI:16449 (6)
CHEBI:55328 (6)
CHEBI:17405 (6)
CHEBI:15354 (6)
CHEBI:17295 (6)
CHEBI:18292 (5)
CHEBI:143235 (5)
CHEBI:21563 (5)
CHEBI:16927 (5)
CHEBI:26271 (5)

Metabolite Name

Creatine (10)
Inosine (10)
Uracil (9)
Valine (9)
Hypoxanthine (9)
Choline (8)
Proline (8)
Uridine (8)
Glycine (7)
4-Pyridoxic acid (7)
Eicosapentaenoic acid (7)
Methionine (7)
Taurine (7)
Docosahexaenoic acid (7)
Arachidonic acid (7)
Adenosine (7)
L-Glutamine (7)
Isoleucine (7)
Adenine (7)
Leucine (6)
Betaine (6)
Xanthosine (6)
Taurocholic acid (6)
L-Tyrosine (6)
Lactulose (5)
Thymine (5)
Thiamine (5)
L-Arginine (5)
Succinic acid (5)
L-Ornithine (5)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (26)
RNA-seq of coding RNA (17)
ChIP-chip by tiling array (12)
ChIP-seq (10)
RNA-seq of non coding RNA (6)
Methylation profiling by high throughput sequencing (5)
Other (3)
RNA-seq of coding RNA from single cells (3)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
Human - One-color microarray (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)

Release Date

2025 (948)
2022 (855)
2023 (786)
2024 (723)
2021 (657)
2020 (486)
2019 (338)
2018 (280)
2017 (236)
2015 (158)
2016 (153)
2014 (133)
2026 (127)
2013 (53)
2012 (49)
2010 (39)
2011 (29)
2009 (10)
2008 (10)
2007 (9)
2006 (5)
2002 (3)
2005 (2)
2003 (1)
2004 (1)
1999 (1)

Lab affiliation

College of Animal Sciences, Zhejiang University, Hangzhou, P. R. China (9)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (3)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Huazhong Agricultural University (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Jinan University (2)
School of Pharmacy, UW-Madison (2)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Zhejiang University (2)
1 Department of Cardiology, Zhongshan Hospital, Fudan University, Shanghai Institute of Cardiovascular Diseases, China. 2 Department of Cardiovascular Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
1 Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, 230001, China. 2 Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. 3 Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
Affiliated Hospital of Qinghai University, Qinghai , China (1)
Beijing Chest Hospital (1)
Bone Marrow Transplantation Center, Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)
Center for Translational Research in Hematological Malignancies, Houston Methodist Neal Cancer Center, Houston Methodist Academic Institute (1)
Chemistry Department, University of Alberta (1)
Chengdu university of traditional chinese medicine (1)
Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College (PUMC) (1)
College of Animal Science, South China Agricultural University (1)
College of Life and Environmental Science, Hangzhou Normal University, Hangzhou 310036, China; Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, Hangzhou Normal University, Hangzhou 310036, China (1)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS) (1)
Department of Biochemistry and Molecular Biology, Health Science Center, Ningbo University, Fenghua Road No.818, Ningbo, 315211, China. (1)
Department of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH 44195, USA (1)
Department of Chemistry and School of Pharmacy, University of Wisconsin-Madison, WI, USA (1)
Department of General Surgery, Key Laboratory of Hepatosplenic Surgery, Ministry of Education, The First Affiliated Hospital of Harbin Medical University, Harbin 150001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
Department of Microbiology, The University of Hong Kong, Hong Kong, SAR, China (1)

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Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (L-Alanine-treated macrophage metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7986 | MetaboLights

Trends and associated factors of HIV, HCV and syphilis infection among different drug users in the China-Vietnam border area: an 11-year cross-sectional study (2010-2020).

Not available

S-EPMC10478360 | biostudies-literature

Active transport of cytoophidia in Schizosaccharomyces pombe.

Not available

S-EPMC6292696 | biostudies-literature

Regulating cation-solvent interactions in PVDF-based solid-state electrolytes for advanced Li metal batteries.

Not available

S-EPMC11843727 | biostudies-literature

Commercially Viable Hybrid Li-Ion/Metal Batteries with High Energy Density Realized by Symbiotic Anode and Prelithiated Cathode.

Not available

S-EPMC9307699 | biostudies-literature

RNA-seq of Acidiphilium sp. C61 culture supplemented with 10 µM 2-Phenethylamine (PEA) against controls

Acidiphilium sp. C61 cultures were cultivated in APPW+YE+Glucose medium with 0 µM or 10 µM PEA. RNA was extracted and library preparation was done using the NEBNext Ultra II directional RNA library prep kit for Illumina. Data was demultiplied by GATC sequencing company and adaptor was trimmed by Tri...

ORGANISM(S): Acidiphilium sp. C61

2020-03-01 | E-MTAB-8619 | biostudies-arrayexpress

Two distinct E3 ligases, SCF^FBXL19 and HECW1, degrade thyroid transcription factor 1 in normal thyroid epithelial and follicular thyroid carcinoma cells, respectively.

Not available

S-EPMC6704452 | biostudies-literature

Comparative Transcriptome Analysis Reveals Sexually Dimorphic Gene Expression in the Gonads of Brachymystax tsinlingensis Li.

Not available

S-EPMC10705525 | biostudies-literature

Integrated 16S rRNA sequencing and nontargeted metabolomics analysis to reveal the mechanisms of Yu-Ye Tang on type 2 diabetes mellitus rats.

Not available

S-EPMC10507721 | biostudies-literature

Enhancement of diepoxin ζ production by yeast extract and its fractions in liquid culture of Berkleasmium-like endophytic fungus Dzf12 from Dioscorea zingiberensis.