Ye Wu W - OmicsDI

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Unknown (2394)
Proteomics (54)
Transcriptomics (50)
Genomics (20)
Metabolomics (11)

Organisms

Homo sapiens (63)
Mus musculus (35)
Arabidopsis thaliana (4)
Ovis aries (3)
Zea mays subsp. mays (2)
Oryza sativa (2)
Oryza sativa Japonica Group (2)
Pseudomonas aeruginosa (2)
Escherichia coli (2)
Bos grunniens (1)
Chlorocebus aethiops (1)
Triticum aestivum (1)
Rattus norvegicus (1)
Camellia oleifera (1)
Zea mays (1)
Dendrobium huoshanense (1)
Nephotettix cincticeps (1)
Pseudomonas aeruginosa PAO1 (1)
Sipunculus nudus (1)

Repository

biostudies-arrayexpress (61)
pride (32)
iProX (21)
MetaboLights (11)
EGA (9)
MassIVE (1)

Tissue

Cell culture (7)
Epithelial cell (4)
B cell (3)
Brain (3)
Macrophage (3)
Whole body (2)
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Cell suspension culture (1)
Colon (1)
Embryonic stem cell (1)
HeLa cell (1)
Heart (1)
Hepatocyte (1)
Liver (1)
Nasal mucosa (1)
Permanent cell line cell (1)
T cell (1)

Disease

Breast cancer (2)
Bacterial infectious disease (1)
COVID-19 (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Colon cancer (1)
Diffuse large B-cell lymphoma activated B-cell type (1)
Diffuse large B-cell lymphoma germinal center B-cell type (1)
Gastric adenocarcinoma (1)
Inflammation (1)
Prostate adenocarcinoma (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (32)
Shotgun proteomics (15)
Mass spectrometry (9)
Bottom-up proteomics (6)
Top-down proteomics (5)
Data-dependent acquisition (3)
NMR spectroscopy (2)
Data-independent acquisition (2)
Gel-based experiment (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Immunopeptidomics (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - positive - reverse phase (6)
Gas Chromatography MS - (2)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
MALDI Synapt G2-S HDMS (1)
Bruker (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2010 (12)
2025 (12)
2023 (12)
2021 (11)
2015 (10)
2022 (10)
2016 (9)
2014 (9)
2012 (9)
2026 (9)
2024 (8)
2013 (6)
2020 (3)
2011 (2)
2009 (2)
2007 (1)
2019 (1)

CHEBI ID

CHEBI:15354 (6)
CHEBI:16449 (5)
CHEBI:16704 (5)
CHEBI:17351 (5)
CHEBI:17368 (5)
CHEBI:17596 (5)
CHEBI:17895 (5)
CHEBI:18186 (5)
CHEBI:30769 (5)
CHEBI:15756 (4)
CHEBI:15765 (4)
CHEBI:15843 (4)
CHEBI:16335 (4)
CHEBI:16347 (4)
CHEBI:16393 (4)
CHEBI:16467 (4)
CHEBI:16750 (4)
CHEBI:16828 (4)
CHEBI:17295 (4)
CHEBI:17405 (4)
CHEBI:17533 (4)
CHEBI:17650 (4)
CHEBI:17750 (4)
CHEBI:17859 (4)
CHEBI:18132 (4)
CHEBI:18292 (4)
CHEBI:24813 (4)
CHEBI:27266 (4)
CHEBI:27432 (4)
CHEBI:27823 (4)

Metabolite Name

Choline (5)
Hypoxanthine (5)
Adenosine (4)
Betaine (4)
3,4,5-Trimethoxycinnamic acid (3)
Arachidonic acid (3)
Cotinine (3)
Creatine (3)
Creatinine (3)
Cytosine (3)
Histamine (3)
L-Arginine (3)
Leucine (3)
Palmitic acid (3)
Palmitoleic acid (3)
Phosphocholine (3)
Sphingosine (3)
Taurocholic acid (3)
Uracil (3)
Valine (3)
(9R,10S,12Z)-9,10-Dihydroxy-8-oxo-12-octadecenoic acid (2)
(9S,10E,12Z,15Z)-9-Hydroxy-10,12,15-octadecatrienoic acid (2)
(S)-(-)-Perillyl alcohol (2)
1,25-Dihydroxyvitamin D3-26,23-lactone (2)
1-(3-Methyl-2-butenoyl)-6-apiosylglucose (2)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (2)
1-Methylhypoxanthine (2)
1-Methylnicotinamide (2)
2,5-Dimethylbenzaldehyde (2)
2-Acetylpyrazine (2)

Study type

Transcription profiling by array (24)
RNA-seq of coding RNA (14)
ChIP-seq (7)
Methylation profiling by array (3)
Methylation profiling by high throughput sequencing (3)
ChIP-chip by tiling array (2)
Comparative genomic hybridization by array (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Animal - High-throughput sequencing (1)
Other (1)
DNA-seq (1)

Release Date

2025 (400)
2022 (337)
2023 (314)
2024 (309)
2021 (249)
2020 (204)
2019 (110)
2018 (85)
2017 (77)
2015 (74)
2016 (70)
2014 (64)
2026 (58)
2012 (32)
2013 (23)
2010 (23)
2011 (12)
2009 (7)
2007 (2)
2008 (2)
2005 (2)
2006 (1)

Lab affiliation

First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (2)
Sencond Military Medical University (2)
University of Science and Technology of China (2)
Zhejiang University (2)
1 Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, 230001, China. 2 Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. 3 Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive Stanford, CA 94305-5175, USA (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands (1)
College of Pharmacy, Anhui University of Chinese Medicine, Hefei 230012, China (1)
College of Pharmacy, Jinan University, Guangzhou 510632, P. R. China (1)
Department of Cardiovascular Surgery, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China (1)
Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST) (1)
Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China; Cancer Center of Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua Medicine, Tsinghua University, Beijing, China (1)
Department of General Surgery, Key Laboratory of Hepatosplenic Surgery, Ministry of Education, The First Affiliated Hospital of Harbin Medical University, Harbin 150001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
Department of Pathology and Duke Cancer Institute, Duke University School of Medicine, Durham, NC 27710, USA (1)
Department of Pathophysiology, School of Basic Medicine, Key Laboratory of Ministry of Education of China for Neurological Disorders, Tongji Medical College, Huazhong University of Science and Technology (1)
Department of System Biology, School of Life Sciences, Guangdong Provincial Key Laboratory of Cell Microenvironment and Disease Research, Shenzhen Key Laboratory of Cell Microenvironment, Southern University of Science and Technology, Shenzhen, 518055, China. (1)
Division of Immune Diversity (D150), German Cancer Research Center (DKFZ), Heidelberg, Germany. (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China (lab head) (1)
National University of Defense Technology, College of Science. (1)
Northwest University (1)
School of Pharmaceutical Sciences, Wenzhou Medical University (1)
Soochow University (1)
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China (1)
University of Macau (1)
Zhejiang Provincial People’s Hospital (1)
the First Affiliated Hospital of Sun Yat-Sen University (1)

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Selective expression of TSPAN2 in vascular smooth muscle is independently regulated by TGF-β1/SMAD and myocardin/serum response factor.

Not available

S-EPMC5434656 | biostudies-literature

Confirmation of Leptobrachellaventripunctata (Fei, Ye, and Li, 1990), based on molecular and morphological evidence in Thailand.

Not available

S-EPMC8530995 | biostudies-literature

Molecular mechanisms underlying Tao-Hong-Si-Wu decoction treating hyperpigmentation based on network pharmacology, Mendelian randomization analysis, and experimental verification.

Not available

S-EPMC11632782 | biostudies-literature

Up-regulation of SFTPB expression and attenuation of acute lung injury by pulmonary epithelial cell-specific NAMPT knockdown.

Not available

S-EPMC5998971 | biostudies-literature

Mechanisms and Molecular Targets of the Tao-Hong-Si-Wu-Tang Formula for Treatment of Osteonecrosis of Femoral Head: A Network Pharmacology Study.

Not available

S-EPMC7499271 | biostudies-literature

Aurora B promotes the CENP-T-CENP-W interaction to guide accurate chromosome segregation in mitosis.

Not available

S-EPMC11337009 | biostudies-literature

Identification of Alkaloids from Corydalisyanhusuo W. T. Wang as Dopamine D₁ Receptor Antagonists by Using CRE-Luciferase Reporter Gene Assay.

Not available

S-EPMC6222624 | biostudies-literature

mRNA expression pattern of KrasG12D mice with acute pancreatitis compared with wild-type mice without acute pancreatitis

Transgenic KrasG12D mice can recapitulate pancreas intra-epithelial neoplasia (PanIN). Caerulein is a cholecystokinin analogue and induces acute pancreatitis when injected intra-abdominally. Caerulein-induced acute pancreatitis will accelerate PanIN progression in KrasG12D mice. We compared mRNA pro...

ORGANISM(S): Mus musculus

2016-05-14 | E-GEOD-77983 | biostudies-arrayexpress

Saturated α‑Olefin Oligomer as a W/O Nanoemulsion for Veterinary Immune Adjuvants Based on Crude Oil to Chemicals Technology.

Not available

S-EPMC12355281 | biostudies-literature

Cytoplasmic Assembly and Selective Nuclear Import of Arabidopsis ARGONAUTE4/siRNA Complexes

Here we profiled small RNAs from whole cell, cytoplasmic and nuclear extracts from three-week-old Arabidopsis seedlings. We unexpectedly found that nuclear functional hc-siRNAs are predominantly present in the cytoplasm. Samples from Arabidopsis thaliana whole cell, cytoplasmic and nuclear extract...

ORGANISM(S): Arabidopsis thaliana

2012-07-12 | E-GEOD-36500 | biostudies-arrayexpress

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