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ProteomicsDynamic study of the cell wall integrity signaling pathway in Aspergillus nidulans
A phosphoproteomic evaluation of the cellular response to micafungin (cell wall perturbant) in the filamentous fungi, A. nidulans, reveals putative, currently unknown cell wall integrity signaling (CWIS) associated proteins. This study used thirteen timepoints were taken from 0 to 10 minutes after c...
ORGANISM(S): Emericella nidulans (Aspergillus nidulans) 
2020-07-16 | PXD015038 | Pride
Cell wall integrity signaling Dynamic Lfq Aspergillus nidulans Micafungin Phosphoproteomics 
TranscriptomicsTranscriptional response on ccw12 mutant from S. cerevisiae
Ccw12p is a cell surface mannoprotein required for cell wall stability. To investigate the compensation mechanism after CCW12 deletion we analysed the global gene expression in ccw12 mutant cells. SEY6210 and MEY12A (SEY6210 deleted for CCW12) yeast strains were growth on YPD medium supplemented wit...
ORGANISM(S): Saccharomyces cerevisiae 
2011-03-16 | E-GEOD-22649 | biostudies-arrayexpress
TranscriptomicsExpression data from yeast (wild type, rlm1 and swi3 mutants) exposed to Congo Red
We did transcription profiling on the effect of rlm1 (MAPK Slt2 transcription factor) deletion and swi3 (component of SWI/SNF complex involved in chromatin remodeling) deletion in genes involved in cell wall stress (Congo Red) response. Three biological samples were analyzed for each condition, and ...
ORGANISM(S): Saccharomyces cerevisiae 
2012-05-24 | E-GEOD-31176 | biostudies-arrayexpress
Transcriptomicsrlm1 mutant 3 hour exposure to zymolyase
We did transcription profiling on the effect of rlm1 deletion, gene involved in cell wall stress response Keywords: cell wall stress response S. cerevisiae (rlm1 mutant) was grown on YEPD. For Zymolyase experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-9933 | biostudies-arrayexpress
Transcriptomicsslt2 mutant 3 hour exposure to zymolyase
We did transcription profiling on the effect of slt2 deletion, gene involved in cell wall stress response Keywords: cell wall stress response S. cerevisiae (slt2 mutant) was grown on YEPD. For Zymolyase experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-9932 | biostudies-arrayexpress
Transcriptomicshog1 mutant 3 hour exposure to zymolyase
We did transcription profiling on the effect of hog1 deletion, gene involved in cell osmotic stress and cell wall stress response Keywords: cell wall stress response S. cerevisiae (hog1 mutant) was grown on YEPD. For Zymolyase experiments, yeast cells were grown overnight at 24 °C to an optical den...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-9931 | biostudies-arrayexpress
Transcriptomicsmsn2/4 mutant 3 hour exposure to zymolyase
We did transcription profiling on the effect of msn2 msn4 deletion, genes involved in several stress process Keywords: cell wall stress response S. cerevisiae (msn2/4 mutant) was grown on YEPD. For Zymolyase experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600)...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-9934 | biostudies-arrayexpress
TranscriptomicsArabidopsis thaliana Growth is Negatively Regulated by the Class III Peroxidase AtPrx71 during Development and in Response to Cell Wall Damage
The cell wall is a crucial structure in plant cells, and modifications in its composition often have a major impact on growth and development. However, the molecular mechanisms responsible for the negative effects of cell wall alterations on plant growth are largely unknown. It was previously shown ...
ORGANISM(S): Arabidopsis thaliana 
2016-01-06 | E-GEOD-66980 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae wild type and fks1 strains exposed to glucosamine
We did transcription profiling on the effect of glucosamine in Saccharomyces cerevisiae using Research Genetics strains BY4741 (wild type) and 5251 (fks1). Yeast cells exposed to glucosamine in YPD growth medium show a significant increase in chitin content in the lateral cell wall. Likewise, cell w...
ORGANISM(S): Saccharomyces cerevisiae 
2007-07-07 | E-GEOD-441 | biostudies-arrayexpress
TranscriptomicsGlobal transcriptional response to transient cell wall damage
Data processing included: 1. Filtering of those bad quality image spots (these includes alterations on the shape or hybridization) 2. Filtering of low intensity which was done flagging with -50 those spots whose feature intensity was lower in any of both channels than the average of the local back...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-09 | E-GEOD-959 | biostudies-arrayexpress
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