Yi M M - OmicsDI

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Unknown (5743)
Transcriptomics (519)
Proteomics (421)
Genomics (126)
Metabolomics (118)
Multiomics (8)
Models (5)
Other (1)

Organisms

Homo sapiens (420)
Mus musculus (247)
Saccharomyces cerevisiae (23)
Rattus norvegicus (22)
Arabidopsis thaliana (20)
Escherichia coli (13)
Daphnia pulex (9)
Danio rerio (7)
Drosophila melanogaster (6)
Zea mays (5)
Sus scrofa (5)
Gallus gallus (4)
Candida albicans (4)
Citrus limonia (3)
Macaca mulatta (3)
Neurospora crassa (3)
Oryza sativa Japonica Group (3)
Severe acute respiratory syndrome coronavirus 2 (2)
Helicobacter pylori 26695 (2)
Xenopus laevis (2)
Caenorhabditis elegans (2)
Vibrio vulnificus (1)
Candidozyma auris (1)
Chamaelirium luteum (1)
Dunaliella tertiolecta (1)
Serendipita vermifera (1)
Streptomyces hygroscopicus subsp. jinggangensis (1)
Oreochromis niloticus (1)
Bdellovibrio bacteriovorus HD100 (1)
Megalobrama amblycephala (1)

Organisms

Halobacterium salinarum NRC-1 (32)
Mus musculus (3)
Zostera muelleri (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (540)
pride (199)
iProX (128)
MetaboLights (111)
MassIVE (44)
ENA (38)
EGA (37)
geo (31)
PeptideAtlas (31)
jPOST (17)
GNPS (7)
BioModels (5)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (51)
Epithelial cell (16)
Permanent cell line cell (15)
Brain (13)
Blood plasma (8)
Liver (8)
Whole body (6)
Blood (5)
Colon (4)
Fibroblast (4)
Plant cell (4)
Vein endothelial cell (4)
B cell (3)
Cell suspension culture (3)
Embryonic stem cell (3)
Leaf (3)
Muscle tissue (3)
Skeletal muscle (3)
Skin (3)
T cell (3)
Adrenal adenoma cell (2)
Blood serum (2)
Cotyledon (2)
Early embryonic cell (2)
Extracellular vesicle (2)
Hypothalamus (2)
Lung (2)
Macrophage (2)
Mammary gland epithelial cell (2)
Brain (1)

Disease

Breast cancer (9)
Colon cancer (6)
Disease free (5)
Malignant neoplasm of ovary (5)
Squamous cell carcinoma (2)
Acute leukemia (2)
Age related macular degeneration (2)
Cardiomyopathy (2)
Cervix carcinoma (2)
Lung cancer (2)
Prostate adenocarcinoma (2)
Type 2 diabetes mellitus (2)
Bacterial infectious disease (1)
COVID-19 (1)
HPV positive (1)
Androgen-dependent prostate cancer (1)
Hepatocellular carcinoma-non tumorous region (1)
HIV and HCV coinfected (1)
HIV (1)
Not Available (1)
Alopecia (1)
Amyloidosis (1)
Brain glioblastoma multiforme (1)
Charcot-Marie-Tooth disease (1)
Chromophobe renal cell carcinoma (1)
Chronic kidney disease (1)
Disease of metabolism (1)
Head and neck squamous cell carcinoma (1)
Idiopathic pulmonary fibrosis (1)
Influenza (1)

Technology Type

Mass Spectrometry (199)
Shotgun proteomics (92)
Mass spectrometry (69)
Mass spectrometry assay (38)
Bottom-up proteomics (33)
Data-dependent acquisition (23)
Gel-based experiment (21)
Affinity purification coupled with mass spectrometry proteomics (20)
Data-independent acquisition (12)
Top-down proteomics (7)
SWATH MS (6)
NMR spectroscopy (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
SRM/MRM (3)
Illumina HiSeq 2000 (2)
All-ion fragmentation (2)
DiaPASEF (2)
HDMSE (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina 2.5M, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
Affinity proteomics (1)
Mass spectrometry imaging (1)
Proteogenomics (1)

Instrument Platform

Q Exactive Plus (8)
Illumina HiSeq 2000 (7)
Orbitrap Fusion Lumos (7)
LTQ (7)
Illumina NovaSeq 6000 (6)
Q Exactive (6)
BGISEQ-500 (4)
LTQ Orbitrap Elite (4)
LTQ Orbitrap Velos (4)
LTQ Orbitrap (3)
NextSeq 500 (2)
Agilent 5975C Series GC/MSD (2)
LTQ FT (2)
Q Exactive HF (2)
TripleTOF 6600 (2)
Orbitrap Eclipse (2)
Orbitrap Exploris 480 (2)
TripleTOF 5600 (2)
GenePix 4000B [Axon Instruments] (1)
Illumina NovaSeq X (1)
Illumina HiSeq X (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Impact (1)
MaXis (1)
Instrument (1)
6540 Q-TOF LC/MS (1)
LTQ XL (1)
MS:1000031 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)

Publication Date

2010 (95)
2026 (84)
2014 (83)
2013 (83)
2023 (80)
2012 (75)
2025 (73)
2022 (68)
2008 (65)
2015 (61)
2024 (59)
2021 (55)
2011 (53)
2016 (37)
2020 (30)
2009 (19)
2017 (19)
2019 (18)
2006 (17)
2018 (16)
2007 (12)
2004 (4)
2005 (3)

UNIPROT ID/AC

P06208-2 (3)
Q0250 (2)
O00187 (1)
P01024 (1)
P02741 (1)
P04003 (1)
P06681 (1)
P06842 (1)
P0C0L4 (1)
P0C0L5 (1)
P34165 (1)
P34166 (1)
Q15485 (1)
A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WVZ5 (1)
A0A087WWA5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1S3 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:16704 (23)
CHEBI:17568 (22)
CHEBI:30769 (22)
CHEBI:17368 (21)
CHEBI:15756 (19)
CHEBI:15891 (18)
CHEBI:32816 (18)
CHEBI:15354 (17)
CHEBI:15971 (17)
CHEBI:16040 (17)
CHEBI:16335 (17)
CHEBI:16359 (17)
CHEBI:16708 (17)
CHEBI:16919 (17)
CHEBI:17154 (17)
CHEBI:17351 (17)
CHEBI:16393 (16)
CHEBI:16467 (16)
CHEBI:16525 (16)
CHEBI:16566 (16)
CHEBI:17562 (16)
CHEBI:17596 (16)
CHEBI:17687 (16)
CHEBI:17750 (16)
CHEBI:17895 (16)
CHEBI:28834 (16)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:18132 (1)
CHEBI:506227 (1)

Metabolite Name

Hypoxanthine (30)
Adenosine (25)
Creatine (25)
Uracil (24)
Adenine (23)
Choline (20)
Cytidine (20)
Betaine (19)
Cytosine (18)
L-Histidine (18)
L-Proline (18)
L-Tyrosine (18)
Uric acid (18)
Uridine (18)
Trigonelline (17)
Creatinine (16)
Guanine (16)
Inosine (16)
L-Arginine (16)
L-Phenylalanine (16)
Taurine (16)
Thymidine (16)
Citric acid (15)
L-Glutamine (15)
Oleamide (15)
Palmitic acid (15)
Pantothenic acid (15)
Phytosphingosine (15)
Riboflavin (15)
Thiamine (15)

First Public Date

2014 (33)
2017 (3)
2025 (2)

Modelling Approach

Ordinary differential equation model (3)
Constraint-based model (1)
Population model (1)

Lab affiliation

Seoul National University (5)
Head of the Curie Institute Mass Spectrometry Platform (4)
Shanghai Key Laboratory of Bioactive Small Molecules, Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Fudan University Shanghai Medical College, Shanghai 200032, China. (4)
1. Department of Biochemistry and Molecular Cell Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine. (2)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Agricultural Biotechnology Research Center, Academia Sinica, Taiwan (2)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology and Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Science. Guangzhou, China (2)
Case Western Reserve University School of Medicine (2)
Department of Biochemistry & Molecular Medicine School of Medicine & Health Sciences The George Washington University Washington, DC 20037 (2)
Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, China. (2)
Department of Life Science, National Taiwan University (2)
Department of Ophthalmology, LMU University Hospital, LMU Munich, Munich, Germany (2)
George Washington University (2)
Institute of Chemistry, Academia Sinica (2)
Institute of Chemistry, Academia Sinica, Taiwan (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB) (2)
Proteomics (2)
State Key Lab of Plant Genomics Institute of Genetics and Developmental Biology Chinese Academy of Sciences, Beijing 100101, China Chaoyang District, Beichen West Road, Campus #1, No. 2 (2)
Wayne State University Chemistry (2)
the First Affiliated Hospital of Chongqing Medical University (2)
1. College of Marine Science, Hainan University, Haikou 570228, China; 2. State Key Laboratory of Marine Resource Utilization in South China Sea, Haikou 570228, China) (1)
1. Ministry of Education Key Laboratory of Biosystems Homeostasis & Protection, College of Life Sciences, Zhejiang University, Hangzhou, China 2. Cancer Center, Zhejiang University, Hangzhou, China (1)
1Cancer Institute, the Second Affiliated Hospital, and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou 310029, China 2Cancer Center, Zhejiang University, Hangzhou 310058, China 3Research Center for Life Science and Human Health, Binjiang Institute of Zhejiang University, Hangzhou 310053, China (1)
Academia Sinica (1)
Academia Sinica,Institute of Biological Chemistry (1)
Amgen Inc. (1)
Amphibian Evolution Lab Pleinlaan 2. 1050 Brussels Belgium (1)
Animal Clinical Pathology, College of Animal Science and Veterinary Medicine, Shandong Agricultural University,Shandong Province, China (1)
Assoc Prof Konstantin Pervushin SCHOOL OF BIOLOGICAL SCIENCES, Nanyang Technological University (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (1)

Submitter Keywords

COVID-19 (1)
FROG (1)

Modification

Not available (3)
15.99491 (1)
57.02146 (1)

Study type

Transcription profiling by array (295)
RNA-seq of coding RNA (65)
Unknown experiment type (34)
ChIP-seq (31)
Comparative genomic hybridization by array (23)
Methylation profiling by high throughput sequencing (19)
RNA-seq of non coding RNA (17)
Other (13)
Methylation profiling by array (13)
ChIP-chip by tiling array (11)
Transcription profiling by tiling array (4)
ChIP-chip by array (4)
RNAi profiling by array (2)
MicroRNA profiling by array (2)
RNA-seq of total RNA (2)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (836)
2022 (747)
2024 (713)
2023 (680)
2021 (605)
2020 (406)
2019 (342)
2018 (261)
2017 (251)
2014 (214)
2015 (204)
2016 (193)
2013 (174)
2012 (129)
2010 (122)
2026 (118)
2011 (102)
2008 (69)
2009 (54)
2007 (25)
2006 (13)
2003 (6)
2005 (5)
2004 (5)
2002 (3)
2001 (2)
2000 (1)
1999 (1)
1994 (1)

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GPR109a-AMPK Axis Mediates the Attenuation of Uric Acid-Induced M1 Macrophage Polarization by β-hydroxybutyrate from Lacticaseibacillus rhamnosus M2b

Hyperuricemia (HUA) is a metabolic disorder marked by increased blood uric acid (UA) levels, closely linked to conditions such as gout. UA-induced macrophage M1 polarization fundamentally exacerbates inflammatory pathophysiology, but current HUA-specific immunoregulatory treatments are inadequat...

2026-01-26 | MTBLS13224 | MetaboLights

Integrated Multi-omics Elucidation of the Uric Acid Degradation Pathway in Limosilactobacillus fermentum M5e

Hyperuricemia is a growing global health concern associated with gout, renal diseases, and cardiovascular disorders. Current pharmacotherapies are often limited by side effects, underscoring the need for alternative strategies. In this study, we isolated Limosilactobacillus fermentum M5...

2026-01-26 | MTBLS13223 | MetaboLights

High salt primes a specific activation state of macrophages, M(Na)

Purpose: Investigate effects of high salt on human macrophage activation Methods: Human monocytes-derived macrophages were treated by additional 51mM NaCl for 24 hours (NaCl groups) or not (Control groups). mRNA profiles were generated by RNA-Seq, in triplicate, using Ion proton（Life tech). qRT–PCR ...

ORGANISM(S): Homo sapiens

2015-09-23 | E-GEOD-68482 | biostudies-arrayexpress

Salt tolerance evaluation and mini-core collection development in Miscanthus sacchariflorus and M. lutarioriparius.

Not available

S-EPMC10948507 | biostudies-literature

Development of mRNA expression signatures for Nao Yi Kang decoction in treating intracerebral hemorrhage

PRJNA1171321 | ENA

Investigation of the gene expression pattern of human hepatocellular carcinoma (HCC) infiltrating M-NM-3M-NM-4T cells

Fresh human HCC tissue and paired pertumor liver tissue were acquired, isolation of the infiltrating lymphocytes was conducted by discontinous density gradient centrifugation in Percoll. After removal of dead cells and incubation with components of TCRM-NM-3/M-NM-4 isolation kit (Mitenyi Biotec), M-...

ORGANISM(S): Homo sapiens

2012-06-04 | E-GEOD-38476 | biostudies-arrayexpress

Genetic diversity and phylogenetic structure of four Tibeto-Burman-speaking populations in Tibetan-Yi corridor revealed by insertion/deletion polymorphisms.

Not available

S-EPMC7196475 | biostudies-literature

Mechanistic Insights into the Dual Directing Group-Mediated C-H Functionalization/Annulation via a Hydroxyl Group-Assisted M^III-M^V-M^III Pathway.

Not available

S-EPMC8280669 | biostudies-literature

Longitudinal multi-omics reveals subset-specific mechanisms underlying irritable bowel syndrome

The gut microbiome has been implicated in multiple human chronic gastrointestinal (GI) disorders. Determining its mechanistic role in disease has been difficult due to apparent disconnects between animal and human studies and lack of an integrated multi-omics view of disease-specific physiologica...

2020-09-08 | MTBLS1396 | MetaboLights

Azole resistance mechanisms in pathogenic M. furfur.

Not available

S-EPMC8092866 | biostudies-literature

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6933 Results

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