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ProteomicsMulti-omic Profiling of Multi-Biosamples Reveals the Role of Amino Acid and Nucleotide Metabolism in Endometrial Cancer
This dataset is part of the multi-omic profiling of endometrial cancer. 12 EC and 11 controls were subjected to untargeted proteomic analysis, using a nano-UHPLC-Orbitrap-MS/MS system in the positive ion mode. A total of 9042 proteins were identified and quantified combining the EC and control group...
ORGANISM(S): Homo Sapiens 
2022-03-28 | PXD030222 |
ProteomicsDeepFLR Facilitates False Localization Rate Control in Phosphoproteomics
Site-specific phosphorylation events affect nearly all the cellular processes and correct phosphosite localization plays an important role in biological or medical health studies. However, direct false localization rate (FLR) control remains challenging in phosphoproteomics. Here, we propose DeepFLR...
ORGANISM(S): Homo Sapiens 
2023-04-04 | PXD037580 |
ProteomicsHigh-Abundance Protein-Guided Hybrid Spectral Library for Data-Independent Acquisition Metaproteomics
Metaproteomics offers a direct avenue to identify microbial proteins in microbiota, enabling compositional and functional characterization of microbiota. Due to the complexity and heterogeneity of microbial communities, in-depth and accurate metaproteomics faces tremendous limitations. One challenge...
ORGANISM(S): Morganella Morganii Clostridium Butyricum Lactobacillus Acidophilus Enterococcus Faecalis Feces Metagenome Enterobacter Asburiae Pseudomonas Aeruginosa 
2023-07-19 | PXD043890 |
ProteomicsAccurate Taxonomic Annotation from Metagenomic Data for Deep Metaproteomic Coverage of Microbiota
We developed an accurate taxonomic annotation strategy from metagenomic data for deep metaproteomic coverage, and also compared the performance of the state-of-the-art LC-MS/MS techniques using a simulated microbial community with 12 species. In addition, we also achieved deep proteome coverage of h...
ORGANISM(S): Enterococcus Faecalis Escherichia Coli Atcc 25922 Pseudomonas Aeruginosa Klebsiella Pneumoniae Homo Sapiens Enterococcus Casseliflavus Morganella Morganii Lactobacillus Acidophilus Clostridium Butyricum Citrobacter Freundii Complex Enterobacter Asburiae Klebsiella Aerogenes Bacteroides Fragilis 
2022-06-21 | PXD034815 |
TranscriptomicsA robust single primate neuroepithelial cell clonal expansion system for neural tube development and disease studies
Developing a model of primate neural tube (NT) development is important to promote many NT disorder studies in model organisms. Here, we report a robust and stable system to allow for clonal expansion of single monkey neuroepithelial stem cells (NESCs) to develop into miniature NT-like structures. S...
ORGANISM(S): Macaca mulatta 
2015-11-21 | E-GEOD-73892 | biostudies-arrayexpress
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