Yi Y Y - OmicsDI

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Unknown (8677)
Proteomics (464)
Transcriptomics (269)
Genomics (90)
Metabolomics (59)
Multiomics (4)
Models (1)

Organisms

Homo sapiens (277)
Mus musculus (163)
Halobacterium salinarum NRC-1 (55)
Daphnia pulex (9)
Rattus norvegicus (9)
Arabidopsis thaliana (8)
Saccharomyces cerevisiae (6)
Rattus rattus (5)
Zea mays (4)
Sus scrofa (4)
Escherichia coli (4)
Mus (4)
Citrus limonia (3)
Gallus gallus (3)
Danio rerio (3)
Enterococcus faecalis (3)
Ovis aries (3)
Macaca mulatta (2)
Neurospora crassa (2)
Bos taurus (2)
Aspergillus nidulans FGSC A4 (1)
Oryza rufipogon (1)
Mustela putorius furo (1)
Brassica rapa subsp. chinensis (1)
Schmidtea mediterranea (1)
Pan troglodytes (1)
Brassica napus (1)
Helicobacter pylori (1)
Oryza sativa Japonica Group (1)
Candida albicans (1)

Organisms

Halobacterium salinarum NRC-1 (32)
Mus musculus (2)
Sus scrofa (1)
Homo sapiens (1)

Repository

iProX (281)
biostudies-arrayexpress (255)
pride (101)
MetaboLights (54)
MassIVE (44)
EGA (38)
ENA (36)
geo (32)
PeptideAtlas (29)
GNPS (5)
jPOST (5)
PAXDB (2)
BioModels (1)
PanoramaPublic (1)

Tissue

Cell culture (27)
Epithelial cell (11)
Permanent cell line cell (9)
Liver (7)
Blood plasma (6)
Whole body (4)
Blood (3)
Blood serum (3)
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Adrenal adenoma cell (2)
Embryonic stem cell (2)
Extracellular vesicle (2)
Hepatocyte (2)
Kidney (2)
Mammary gland epithelial cell (2)
Brain (1)
A549-CR cell (1)
Anterior silk gland (1)
B cell (1)
B-cell lymphoma cell (1)
Cell suspension culture (1)
Cerebrospinal fluid (1)
Chromophobe renal cell carcinoma cell (1)
Colon (1)
Cornea (1)
Epididymal white adipose tissue (1)
Epithelial cell of cervix (1)
Fibroblast (1)
Flower (1)
HeLa cell (1)

Disease

Breast cancer (3)
Disease free (3)
Cervix carcinoma (2)
Influenza (2)
Malignant neoplasm of ovary (2)
Type 2 diabetes mellitus (2)
Acute leukemia (1)
Charcot-Marie-Tooth disease (1)
Chromophobe renal cell carcinoma (1)
Colon cancer (1)
Head and neck squamous cell carcinoma (1)
Hepatocellular carcinoma (1)
Lung adenocarcinoma (1)
Lymphoma (1)
Multidrug-resistant tuberculosis (1)
Non-small cell lung carcinoma (1)
Prostate adenocarcinoma (1)
Renal cell carcinoma (1)

Technology Type

Mass Spectrometry (101)
Shotgun proteomics (44)
Mass spectrometry (43)
Bottom-up proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (12)
Data-dependent acquisition (11)
Gel-based experiment (10)
Mass spectrometry assay (8)
Top-down proteomics (6)
NMR spectroscopy (4)
SRM/MRM (4)
SWATH MS (4)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA (2)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Mass spectrometry imaging (2)
Illumina 2.5M, Illumina HiSeq 2000 (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (19)
Liquid Chromatography MS - negative - reverse phase (15)
Q Exactive (8)
Q Exactive Plus (8)
Liquid Chromatography MS - negative - hilic (7)
Liquid Chromatography MS - positive - hilic (7)
Orbitrap Fusion Lumos (6)
LTQ Orbitrap Elite (4)
Q Exactive HF (3)
Orbitrap Eclipse (3)
Orbitrap Exploris 480 (3)
Illumina NovaSeq 6000 (2)
Agilent 5975C Series GC/MSD (2)
LTQ FT (2)
MaXis (2)
TripleTOF 6600 (2)
LTQ Orbitrap Velos (2)
Orbitrap Fusion (2)
UPLC Q-TOF Premier (Waters) (2)
Gas Chromatography MS - positive (2)
Bruker (2)
10X Genomics Chromium Single Cell Kit (1)
Illumina HiSeq 2000 (1)
6540 Q-TOF LC/MS (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Exploris 240 (1)
Q Exactive HF-X (1)
TimsTOF HT (1)
TripleTOF 5600 (1)
Velos Plus (1)

Publication Date

2010 (83)
2023 (80)
2022 (50)
2020 (45)
2024 (45)
2008 (44)
2021 (43)
2025 (40)
2012 (34)
2014 (32)
2011 (32)
2013 (30)
2015 (24)
2019 (22)
2026 (21)
2018 (20)
2009 (16)
2006 (16)
2016 (15)
2017 (10)
2005 (3)
2007 (3)
2004 (2)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2A5A_HUMAN (1)
2A5D_HUMAN (1)
2A5E_HUMAN (1)
2A5G_HUMAN (1)
2AAA_HUMAN (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABD_HUMAN (1)
3BHS1_HUMAN (1)
3HIDH_HUMAN (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:16704 (18)
CHEBI:17568 (17)
CHEBI:17368 (17)
CHEBI:30769 (17)
CHEBI:16708 (16)
CHEBI:15756 (15)
CHEBI:16335 (14)
CHEBI:17895 (14)
CHEBI:17351 (14)
CHEBI:17992 (13)
CHEBI:16040 (13)
CHEBI:30746 (13)
CHEBI:17154 (13)
CHEBI:17509 (13)
CHEBI:16467 (13)
CHEBI:15891 (13)
CHEBI:48131 (13)
CHEBI:15971 (13)
CHEBI:32816 (13)
CHEBI:15354 (13)
CHEBI:17295 (13)
CHEBI:17596 (13)
CHEBI:17858 (12)
CHEBI:17562 (12)
CHEBI:16750 (12)
CHEBI:17361 (12)
CHEBI:17748 (12)
CHEBI:15428 (12)
CHEBI:16566 (12)
CHEBI:16196 (12)

Metabolite Name

Hypoxanthine (16)
Adenosine (13)
Uracil (12)
Taurine (12)
Adenine (12)
Creatinine (12)
Azelaic acid (11)
Uridine (11)
L-Proline (10)
Benzoic acid (10)
L-Arginine (10)
Arachidonic acid (10)
Theophylline (10)
Oleic acid (10)
Cytidine (10)
Sucrose (10)
L-Histidine (9)
Citric acid (9)
Urocanic acid (9)
Cytosine (9)
Dodecanedioic acid (9)
Uric acid (9)
Creatine (9)
L-Tyrosine (9)
L-Phenylalanine (9)
Valine (8)
Betaine (8)
Choline (8)
Sebacic acid (8)
Traumatic acid (8)

First Public Date

2014 (34)
2023 (1)
2017 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

1. Department of Biochemistry and Molecular Cell Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine. (2)
Agricultural Biotechnology Research Center, Academia Sinica, Taiwan (2)
Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, China. (2)
ETH Zurich (2)
Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical School (2)
Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB) (2)
Sun Yat-sen University (2)
the First Affiliated Hospital of Chongqing Medical University (2)
1Cancer Institute, the Second Affiliated Hospital, and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou 310029, China 2Cancer Center, Zhejiang University, Hangzhou 310058, China 3Research Center for Life Science and Human Health, Binjiang Institute of Zhejiang University, Hangzhou 310053, China (1)
Amphibian Evolution Lab Pleinlaan 2. 1050 Brussels Belgium (1)
Animal Clinical Pathology, College of Animal Science and Veterinary Medicine, Shandong Agricultural University,Shandong Province, China (1)
Assoc Prof Konstantin Pervushin SCHOOL OF BIOLOGICAL SCIENCES, Nanyang Technological University (1)
BGI-Shenzhen, Shenzhen, 518083,China (1)
Baylor College of Medicine (1)
Beijing Geriatric Healthcare and Disease Prevention Center, Xuanwu Hospital, Capital Medical University, Beijing, China. (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology and Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Science. Guangzhou, China (1)
Capital Institute of Pediatrics (1)
Case Western Reserve University School of Medicine (1)
Center for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea (1)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (1)
Center of Systems Biology, Biomedical Research Foundation, Academy of Athens, Greece (1)
Children's Hospital of Fudan University, National Children's Medical Center, and Shanghai Key Laboratory of Medical Epigenetics, International Co-laboratory of Medical Epigenetics and Metabolism, Ministry of Science and Technology, Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China (1)
College of Pharmacy, Gansu University of Chinese Medicine, Lanzhou, China (1)
Department of Animal and Poultry Sciences, Virginia Tech., Blacksburg, VA, USA (1)
Department of Biochemistry University of Cambridge (1)
Department of Biochemistry and Molecular Biology, Molecular Medicine & Cancer Research Center, Chongqing Medical University, Yuzhong District, Yi XueYuan Road, No 1, Chongqing 400016, China. (1)
Department of Biochemistry, University of Cambridge (1)
Department of Biological Sciences, KAIST (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland Faculty of Science, University of Zurich, Switzerland (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)

IsPrivate

False (1)

Modification

Not available (2)
15.977156 (1)
15.99491 (1)
57.02146 (1)
57.021464 (1)

Study type

Transcription profiling by array (138)
Unknown experiment type (33)
RNA-seq of coding RNA (26)
Methylation profiling by high throughput sequencing (10)
Comparative genomic hybridization by array (8)
Other (6)
ChIP-seq (6)
Methylation profiling by array (6)
ChIP-chip by tiling array (5)
RNA-seq of non coding RNA (5)
Transcription profiling by tiling array (4)
RNAi profiling by array (1)
ChIP-chip by array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (1412)
2022 (1176)
2023 (1129)
2024 (1077)
2021 (923)
2020 (616)
2019 (471)
2018 (389)
2017 (322)
2016 (269)
2015 (223)
2014 (199)
2026 (184)
2013 (134)
2010 (115)
2012 (99)
2011 (69)
2009 (48)
2008 (41)
2006 (9)
2005 (8)
2007 (7)
2004 (6)
2003 (4)
2002 (1)
2000 (1)

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De novo origin of VCY2 from autosome to Y-transposed amplicon.

Not available

S-EPMC4370482 | biostudies-literature

The transcriptional modulator H2AFY marks Huntington's disease activity in men and mice

To accelerate the development of disease-modifying therapeutics for Huntington’s disease (HD), a dynamic biomarker of disease activity and treatment response is critically needed. Venous cellular whole blood from 8 patients with Huntington's disease (HD) and 6 control subjects were collected in PAXg...

ORGANISM(S): Homo sapiens

2011-09-01 | E-GEOD-24250 | biostudies-arrayexpress

Complete genome and methylome analysis of Neisseria meningitidis associated with increased serogroup Y disease.

Not available

S-EPMC7046676 | biostudies-literature

Difference in virulence between Neisseria meningitidis serogroups W and Y in transgenic mice.

Not available

S-EPMC7160935 | biostudies-literature

Clinical presentation of invasive disease caused by Neisseria meningitidis serogroup Y in Sweden, 1995 to 2012.

Not available

S-EPMC5968308 | biostudies-literature

Dissecting the Underlying Pharmaceutical Mechanism of Chinese Traditional Medicine Yun-Pi-Yi-Shen-Tong-Du-Tang Acting on Ankylosing Spondylitis through Systems Biology Approaches.