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ModelsYilmaz2020 - iCEL1314 (Tissue relevant C.Elegans metabolism model)
iCEL1314 is a genome-scale metabolic network model of Caenorhabditis elegans. This model is based on a previous model named iCEL1273. Updates include the addition of ascaroside biosynthesis pathways, new annotations of gene-protein-reaction (GPR) associations, and manual curation of existing GPRs, p...
2020-10-07 | MODEL2007280001 | BioModels
TranscriptomicsModeling Formamide Denaturation of Probe-Target Hybrids for Improved Microarray Probe Design in Microbial Diagnostics
This study aimed to model formamide-based melting for the optimization of the sensitivity and specifcity of oligonucleotide probes in dignostic high-density microarrays. Formamide melting profiles of DNA oligonucleotides were obtained with a high-density microarray targeting 16S rRNA genes of Escher...
ORGANISM(S): Rhodobacter sphaeroides 2.4.1 
2012-06-29 | E-GEOD-33021 | biostudies-arrayexpress
ProteomicsC. elegans as a model for inter-individual variation in metabolism
Fox BW, Ponomarova O, Lee YU, Zhang G, Giese EG, Walker M, Roberto NM, Na H, Reis-Rodrigues P, Curtis BJ, Kolodziej AR, Crombie TA, Zdraljevic S, Yilmaz LS, Andersen EC, Schroeder FC, Walhout AJM (2022) C. elegans as a model for inter-individual variation in metabolism
ORGANISM(S): Caenorhabditis Elegans (ncbitaxon:6239) 
2021-07-13 | MSV000087810 | MassIVE
MetabolomicsGNPS - C. elegans as a model for inter-individual variation in metabolism
Fox BW, Ponomarova O, Lee YU, Zhang G, Giese EG, Walker M, Roberto NM, Na H, Reis-Rodrigues P, Curtis BJ, Kolodziej AR, Crombie TA, Zdraljevic S, Yilmaz LS, Andersen EC, Schroeder FC, Walhout AJM (2022) C. elegans as a model for inter-individual variation in metabolism
ORGANISM(S): Caenorhabditis Elegans (ncbitaxon:6239) 
2021-07-13 | MSV000087810 | GNPS
ModelsImam2011_RhodobacterSphaeroides_MetabolicNetwork
This model is from the article: iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network Imam S, Yilmaz S, Sohmen U, Gorzalski AS, Reed JL, Noguera DR, Donohue TJ. BMC Syst Biol. 2011 Jul 21;5:116. 21777427 ...
2005-01-01 | MODEL1106220000 | BioModels
UnknownBacterial content of the human pancreatic duct: An observational study.
Not available
S-EPMC9712552 | biostudies-literature
UnknownDynamics and cytokinic regulation of immune cell infiltration in genetically engineered mouse models of pancreatic cancer dictate the sensitivity to immunotherapy.
Not available
S-EPMC10794007 | biostudies-literature
MetabolomicsGNPS - Microbial and host compensation in a model of leucine breakdown deficiency
Representative MS/MS data for WT and mccc-1 mutant C. elegans reared on Comamonas aquatica. Data in both positive and negative ionization mode, as indicated in the files names. The worm bodies (endo-metabolome) and conditioned media (exo-metabolome) were harvested, extracted, and analyzed separately...
ORGANISM(S): Caenorhabditis Elegans (ncbitaxon:6239) 
2024-01-10 | MSV000093813 | GNPS
UnknownNationwide prospective audit for the evaluation of appendicitis risk prediction models in adults: right iliac fossa treatment (RIFT)-Turkey.
Not available
S-EPMC11463697 | biostudies-literature
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