Yin R R - OmicsDI

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Unknown (7503)
Transcriptomics (552)
Proteomics (226)
Genomics (64)
Metabolomics (52)
Models (6)
Multiomics (6)
Other (2)
Clinical (1)

Organisms

Homo sapiens (313)
Mus musculus (180)
Saccharomyces cerevisiae (32)
Rattus norvegicus (19)
Escherichia coli (12)
Mycobacterium tuberculosis (9)
Arabidopsis thaliana (8)
Escherichia coli str. K-12 substr. MG1655 (7)
Caenorhabditis elegans (6)
Drosophila melanogaster (6)
Streptococcus pneumoniae (5)
Pseudomonas aeruginosa (5)
Caulobacter vibrioides (4)
Yersinia pestis (4)
Candida albicans (4)
Danio rerio (4)
Macaca mulatta (4)
Citrus limonia (3)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (3)
Dictyostelium discoideum (3)
Aspergillus fumigatus (3)
Listeria monocytogenes (3)
Schizosaccharomyces pombe (3)
Geobacter sulfurreducens (3)
Streptomyces coelicolor (3)
Severe acute respiratory syndrome coronavirus 2 (2)
Bacteroides fragilis NCTC 9343 (2)
Penicillium chrysogenum (2)
Treponema denticola (2)
Streptococcus agalactiae (2)

Organisms

Mus musculus (2)

Repository

biostudies-arrayexpress (588)
pride (151)
MetaboLights (52)
iProX (35)
MassIVE (29)
EGA (26)
jPOST (5)
ENA (4)
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FAIRDOMHub (3)
PeptideAtlas (3)
geo (2)
GPMDB (2)
PAXDB (2)

Tissue

Cell culture (38)
Heart (8)
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Whole body (6)
Blood (5)
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HEK-293T cell (4)
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Disease

Cardiovascular system disease (6)
COVID-19 (4)
Prostate carcinoma (3)
Not Available (2)
Breast cancer (2)
Colon cancer (2)
Liver cancer (2)
Non-small cell lung carcinoma (2)
Type 1 diabetes mellitus (2)
Respiratory syncytial virus infection (1)
Infected with Influenza A/WSN/33 (H1N1) (1)
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Acute promyelocytic leukemia (1)
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Normal (1)
Ovarian Neoplasms (1)
Acute leukemia (1)
Atherosclerosis (1)
Autism spectrum disorder (1)
Chronic lymphocytic leukemia (1)
Dilatation of the ascending aorta (1)
Human immunodeficiency virus infectious disease (1)
Juvenile myelomonocytic leukemia (1)
Malignant pleural mesothelioma (1)
Melanoma (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Myocardial infarction (1)
Non-alcoholic steatohepatitis (1)
Prostate adenocarcinoma (1)
Prostate neuroendocrine neoplasm (1)

Technology Type

Mass Spectrometry (151)
Shotgun proteomics (79)
Mass spectrometry (40)
Bottom-up proteomics (22)
Affinity purification coupled with mass spectrometry proteomics (15)
Mass spectrometry assay (12)
Gel-based experiment (10)
Data-dependent acquisition (8)
Data-independent acquisition (7)
All-ion fragmentation (5)
SWATH MS (5)
SRM/MRM (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Mass spectrometry imaging (2)
Top-down proteomics (2)
Illumina HiSeq 2000 (1)
Glycoproteomics (1)
Proteogenomics (1)

Instrument Platform

Illumina HiSeq 2000 (13)
Illumina NovaSeq 6000 (9)
NextSeq 500 (7)
Illumina HiSeq 2500 (6)
Q Exactive (5)
GenePix 4000B [Axon Instruments] (4)
Illumina MiSeq (4)
Orbitrap Fusion Lumos (4)
Other (3)
Illumina HiSeq 4000 (3)
MS:1000031 (3)
Orbitrap Fusion (3)
GenePix Professional 4200A [Axon Instruments] (2)
Illumina HiSeq 1500 (2)
Instrument (2)
BD FACSAria™ III (1)
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GenePix4000B (1)
DNA microarray scanner (Agilent #G2565CA) (1)
Ion Chef™ System and Ion S5™ System or Ion GeneStudio™ S5 Systems. (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Illumina HiScanSQ (1)
HP GeneArray [Affymetrix/HP] (1)
ScanArray 4000XL [PerkinElmer] (1)
Illumina Genome Analyzer II (1)
Affymetrix Fluidics Station 400 (1)
Axon GenePix 4000B scanning hardware (1)
Illumina NovaSeq X (1)
Ion Torrent S5 XL (1)
Illumina HiSeq 3000 (1)

Publication Date

2010 (100)
2011 (73)
2012 (70)
2013 (66)
2014 (63)
2022 (53)
2015 (48)
2023 (45)
2016 (43)
2008 (43)
2024 (41)
2025 (39)
2021 (38)
2026 (31)
2020 (22)
2017 (22)
2007 (19)
2019 (16)
2018 (14)
2009 (14)
2005 (7)
2006 (4)

UNIPROT ID/AC

1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2A5A_HUMAN (1)
2A5B_HUMAN (1)
2A5D_HUMAN (1)
2A5E_HUMAN (1)
2A5G_HUMAN (1)
2AAA_HUMAN (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABB_HUMAN (1)
2ABD_HUMAN (1)
2ABG_HUMAN (1)
3BP1_HUMAN (1)
3BP5L_HUMAN (1)
3BP5_HUMAN (1)
3HAO_HUMAN (1)
3HIDH_HUMAN (1)
3MG_HUMAN (1)
41_HUMAN (1)
4EBP1_HUMAN (1)
4EBP2_HUMAN (1)
4ET_HUMAN (1)
4F2_HUMAN (1)
5HT1A_HUMAN (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17596 (19)
CHEBI:16750 (18)
CHEBI:16335 (17)
CHEBI:17368 (17)
CHEBI:30769 (17)
CHEBI:15891 (16)
CHEBI:16708 (16)
CHEBI:17351 (16)
CHEBI:17752 (16)
CHEBI:15756 (15)
CHEBI:16680 (15)
CHEBI:17509 (15)
CHEBI:17562 (15)
CHEBI:18183 (15)
CHEBI:28842 (15)
CHEBI:15971 (14)
CHEBI:16015 (14)
CHEBI:17015 (14)
CHEBI:17295 (14)
CHEBI:17750 (14)
CHEBI:17858 (14)
CHEBI:30805 (14)
CHEBI:16411 (13)
CHEBI:16436 (13)
CHEBI:16704 (13)
CHEBI:16927 (13)
CHEBI:17895 (13)
CHEBI:18050 (13)
CHEBI:7916 (13)
CHEBI:50211 (1)

Metabolite Name

Adenine (22)
Guanosine (19)
Hypoxanthine (19)
Inosine (19)
Adenosine (18)
Cytidine (16)
Riboflavin (15)
Taurine (15)
Betaine (14)
L-Phenylalanine (14)
Uracil (14)
Cytosine (13)
Deoxyinosine (13)
Uridine (13)
Xanthine (13)
Creatine (12)
Histamine (12)
L-Glutamine (12)
Choline (11)
Creatinine (11)
Deoxyguanosine (11)
Glycine (11)
Guanine (11)
L-Tryptophan (11)
Lysine (11)
N6-Acetyl-L-lysine (11)
Glutathione (10)
Glutathione disulfide (10)
L-Arginine (10)
L-Carnitine (10)

First Public Date

2022 (2)
2019 (2)

Modelling Approach

Differential equation model (1)
Ordinary differential equation model (1)
Population model (1)

Study status

Recruiting (1)

Lab affiliation

Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (4)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (3)
King's College London (3)
Pacific Northwest National Laboratory (3)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
King's BHF Centre, King's College London, London, UK (2)
King's College London British Heart Foundation Centre, School of Cardiovascular Medicine and Sciences, King's College London, London, UK. (2)
King's College London, British Heart Foundation Centre, School of Cardiovascular Medicine and Sciences, London, UK (2)
School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou, 510006, Guangdong, P.R. China. (2)
Shanghai Hoogen Biotechnology Co., Ltd. (2)
Shenzhen Hospital of Southern Medical University (2)
The University of Melbourne (2)
University of Virginia (2)
1. Institute of Comparative Medicine, College of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China 2. Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou 225009, China (1)
3. College of Pharmacy / International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development of Ministry of Education (MOE) of China, Jinan University, Guangzhou 510632, China (1)
Affiliated Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Assistant Professor Department of Neurology (1)
Assistant Professor of Microbiology, Immunology, and Cancer Biology Associate Director for Diversity, Equity, and Inclusio at the Carter Immunology Center University of Virginia Charlottesville, VA (1)
BCI Mass Spectrometry Facility 10,2 &1.03 First Floor John Vane Science Centre Bars Cancer Institute, Queen Mary Charterhouse square London EC1M 6BQ (1)
Baylor College of Medicine (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht (1)
Biomolecular Mass Spectrometry and Proteomics, Utrecht University, Utrecht, The Netherlands (1)
Buchmann Institute of Molecular Life Sciences and Institute of Biophysical Chemistry, Goethe University, Frankfurt am Main, Germany (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences,Guangzhou, China (1)
CVRTI, University of Utah (1)
Cardiovascular Division, King's College London (1)
Cardiovascular Division, King's College London, London, UK (1)
Chemistry & Biochemistry (1)

Keyword

Chinese Herbal Medicine, Immunity, T Cell, Dendritic Cell (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Submitter Keywords

COVID-19 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (358)
RNA-seq of coding RNA (60)
Unknown experiment type (29)
ChIP-seq (26)
Transcription profiling by RT-PCR (24)
Other (17)
Comparative genomic hybridization by array (11)
Transcription profiling by tiling array (9)
RNA-seq of non coding RNA (9)
Methylation profiling by array (7)
ChIP-chip by tiling array (6)
RNA-seq of coding RNA from single cells (5)
Methylation profiling by high throughput sequencing (5)
High-throughput sequencing (3)
DNA-seq (3)
RNA-seq of total RNA (3)
Animal - High-throughput sequencing (2)
Cell line - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Genotyping by array (1)
Antigen profiling (1)
ATAC-seq (1)
RIP-seq (1)
Interventional (1)

Release Date

2025 (1271)
2022 (1015)
2024 (939)
2023 (915)
2021 (744)
2020 (563)
2019 (426)
2018 (330)
2017 (290)
2016 (264)
2015 (242)
2014 (211)
2026 (162)
2013 (161)
2010 (137)
2012 (130)
2011 (122)
2008 (62)
2009 (47)
2007 (25)
2005 (17)
2006 (7)
2004 (7)
2000 (2)
2003 (1)
1998 (1)

Location

Taiwan (1)

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R. sphaeroides delta-cryB

This SuperSeries is composed of the following subset Series: GSE33553: R. sphaeroides delta-cryB vs. R. sphaeroides 2.4.1 photo-oxidative stress, aerobic conditions GSE33554: R. sphaeroides delta-CryB vs. R. sphaeroides 2.4.1 microarobic conditions GSE33555: R. sphaeroides delta-cryB vs. R. sphaeroi...

ORGANISM(S): Rhodobacter sphaeroides 2.4.1

2011-11-09 | E-GEOD-33556 | biostudies-arrayexpress

R. sphaeroides delta-cryB vs. R. sphaeroides 2.4.1 under blue light, semiaerobic conditions

Transcriptional profiling of R. sphaeroides delta-cryB compared to control R. sphaeroides 2.4.1 under blue light, semiaerobic conditions. Two-strain experiment under blue light illumination (20µmol m-2 s-1) and semiaerobic (90 µM) conditions

ORGANISM(S): Rhodobacter sphaeroides 2.4.1

2011-11-09 | E-GEOD-33555 | biostudies-arrayexpress

R. sphaeroides delta-cryB vs. R. sphaeroides 2.4.1 photo-oxidative stress, aerobic conditions

Transcriptional profiling of R. sphaeroides delta-cryB compared to control R. sphaeroides 2.4.1 under photo-oxidative stress, aerobic conditions. Two-strain experiment under 20' photo-oxidative stress (singlet oxygen generated by methylene blue under high light illumination) and aerobic (180 µM) con...

ORGANISM(S): Rhodobacter sphaeroides 2.4.1

2011-11-09 | E-GEOD-33553 | biostudies-arrayexpress

R. sphaeroides delta-CryB vs. R. sphaeroides 2.4.1 microarobic conditions

Transcriptional profiling of R. sphaeroides delta-CryB comparing to control R. sphaeroides 2.4.1 under microaerobic conditions Two strain experiment under microaerobic conditions. 9 Biological replicas, independetly grown and harvested at OD660=0,8; 1-3 pooled in replicate 1, 4-6 pooled in replicate...

ORGANISM(S): Rhodobacter sphaeroides 2.4.1

2011-11-09 | E-GEOD-33554 | biostudies-arrayexpress

Regulation of the Endocytosis and Prion Chaperoning Machineries by Yeast E3 Ubiquitin Ligase Rsp5 as Revealed by Orthogonal Ubiquitin Transfer

Attachment of the ubiquitin (UB) peptide to proteins via the E1-E2-E3 enzymatic machinery regulates diverse biological pathways, yet identification of the substrates of E3 UB ligases remains a challenge. We overcame this challenge by constructing an “orthogonal UB transfer (OUT) cascade with yeast E...

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2022-10-13 | PXD023688 | Pride

Ubiquitin Lc-ms/ms

Spatial Transcriptomic Analysis Using R-Based Computational Machine Learning Reveals the Genetic Profile of Yang or Yin Deficiency Syndrome in Chinese Medicine Theory.

Not available

S-EPMC8942619 | biostudies-literature

Genes expression profiles of postmenopausal osteoporosis with kidney Yin deficiency

Investigate genes expression profiles of postmenopausal osteoporosis with kidney Yin deficiency in peripheral blood By TCM syndrome, 10 patients with postmenopausal osteoporosis were divided into three groups: kidney Yin deficiency (n=4), kidney Yang deficiency (n=3), non-kidney deficiency (n=3), a...

ORGANISM(S): Homo sapiens

2014-03-23 | E-GEOD-56116 | biostudies-arrayexpress

RNA-seq of RNase R treated poly(A)-/ribo- RNAs from H9 cells

We have used RNA-seq to examine circular RNAs from RNase R treated poly(A)-/ribo- RNAs in human embryonic stem cells Examine circular RNAs in human embryonic stem cells

ORGANISM(S): Homo sapiens

2013-06-18 | E-GEOD-48003 | biostudies-arrayexpress

Two new species and new record of Batricavus Yin & Li (Coleoptera, Staphylinidae, Pselaphinae) from China.

Not available

S-EPMC3428787 | biostudies-literature

Gene expression profiles of Liuwei Dihuang Pill treatment postmenopausal osteoporosis with kidney Yin deficiency

Investigate gene expression profiles of Liuwei Dihuang Pill treatment postmenopausal osteoporosis with kidney Yin deficiency in peripheral blood Liuwei Dihuang Pill (LDP), a classic Chinese medicinal formula, has been used to treat PMO with kidney YIN deficiency for three months. Whole human genome ...

ORGANISM(S): Homo sapiens

2014-05-06 | E-GEOD-57273 | biostudies-arrayexpress

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