Yoder-Himes Deborah D

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Transcriptomics (2)
Metabolomics (1)

Organisms

Escherichia sp. TW14265 (1)
Burkholderia cenocepacia (1)

Repository

biostudies-arrayexpress (2)
MetaboLights (1)

Technology Type

Mass spectrometry assay (1)

Instrument Platform

Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2012 (1)
2010 (1)
2024 (1)

Metabolite Name

(+)-Allopumiliotoxin 267A (1)
(+)-Eudesmin (1)
(-)-Lupinine (1)
(.+/-.)-Laudanosine (1)
(1R,2S)-1-(7,8-Dihydro-6-pteridinyl)-1,2-propanediol (1)
(1S,5R)-5-Isopropenyl-2-methyl-2-cyclohexen-1-yl beta-D-glucopyranoside (1)
(2E)-hexadecenoylcarnitine (1)
(2E,2'E)-3,3'-[2,4-Bis(1,3-benzodioxol-5-yl)-1,3-cyclobutanediyl]bis[1-(1-piperidinyl)-2-propen-1-one] (1)
(2R,5R,6R)-3-[(1E,3E)-hepta-1,3-dien-1-yl]-5,6-dihydroxy-2-(hydroxymethyl)cyclohexan-1-one (1)
(2S)-3-Hydroxy-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)butanoic acid (non-preferred name) (1)
(2S)-3-Methyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)butanoic acid (non-preferred name) (1)
(2S)-3-Phenyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)propanoic acid (non-preferred name) (1)
(2S)-4-Methyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)pentanoic acid (non-preferred name) (1)
(2S)-5-Carbamimidamido-2-(2-oxo-1-azetidinyl)pentanoic acid (1)
(4-Ethoxyphenyl)urea (1)
(4R)-4-{[(4R)-4-Hydroxy-1-methyl-L-prolyl]oxy}-1-methyl-L-proline (1)
(4S,5S,8S,10R)-4,5,8-trihydroxy-10-methyl-3,4,5,8,9,10-hexahydro-2H-oxecin-2-one (1)
(4S,5S,8S,10R)-4,5,8-trihydroxy-10-methyl-3,4,5,8,9,10-hexahydro-2H-oxecin-2-one*;*Hopantenic acid (1)
(5Z)-3-aminonon-5-enoic acid (1)
(5alpha,7alpha)-17-(Cyclopropylmethyl)-7-(2-hydroxy-3,3-dimethyl-2-butanyl)-6-methoxy-18,19-dihydro-4,5-epoxy-6,14-ethenomorphinan-3-yl beta-D-glucopyranosiduronic acid (1)
(6aR,11aR)-10-(3-Hydroxy-3-methylbutyl)-6a,11a-dihydro-6H-[1]benzofuro[3,2-c]chromene-3,9-diol (1)
(±)15-HETE (1)
.alpha.-Aminoadipic acid (1)
.alpha.-Glucoheptitol (1)
1,3,7-Trimethyluric acid (1)
1,3a,8-Trimethyl-1,2,3,3a,8,8a-hexahydropyrrolo[2,3-b]indol-5-yl methylcarbamate (1)
1,6-Dimethoxypyrene (1)
1-Methyl-2,3,4,9-tetrahydro-1H-beta-carboline-1,3-dicarboxylic acid (1)
1-Methyl-L-histidine*,*3-Methyl-L-histidine (1)
1-Nitrosopiperidine (1)

Study type

Comparative genomic hybridization by array (1)
Transcription profiling by array (1)

Release Date

2012 (1)
2010 (1)

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Identification of potential therapeutic targets for Burkholderia cenocepacia by comparative transcriptomics

[1] Transcription profiling of one Burkholderia cenocepacia clinical isolate, J2315, versus a soil isolate, HI2424, in conditions mimicking CF sputum [2] Transcription profiling of Burkholderia cenocepacia isolates J2315 and HI2424 in media mimicking CF sputum or the soil environment [1] J2315 vs. H...

ORGANISM(S): Burkholderia cenocepacia

2010-05-19 | E-GEOD-15817 | biostudies-arrayexpress

Burkholderia cenocepacia-mediated inhibition of Staphylococcus aureus growth and biofilm formation

Staphylococcus aureus asymptomatically colonizes the nasal cavity and pharynx of up to 60% of the human population and, as an opportunistic pathogen, can breach its normal habitat, resulting in life-threatening infections. S. aureus infections are of additional concern for populations with impair...

2024-11-26 | MTBLS11049 | MetaboLights

Genomic diversity of Escherichia isolates from diverse habitats

Comparative genomic hybridization between Escherichia coli strains to determine core and pan genome content of clinical and environmental isolates Two color experiment, Escherichia coli Sakai (reference), clinical and environmental Escherichia coli strains (testers): At least two replicates includin...

ORGANISM(S): Escherichia sp. TW14265

2012-08-30 | E-GEOD-39667 | biostudies-arrayexpress

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