You Di D - OmicsDI

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Transcriptomics (962)
Genomics (150)
Unknown (95)
Proteomics (12)
Metabolomics (5)

Organisms

Drosophila melanogaster (534)
Homo sapiens (170)
Mus musculus (136)
Schizosaccharomyces pombe (40)
Rattus norvegicus (34)
Rhizobium leguminosarum (30)
Arabidopsis thaliana (22)
Saccharomyces cerevisiae (19)
Escherichia coli (11)
Bacillus amyloliquefaciens (7)
Solanum tuberosum (6)
Gallus gallus (5)
Neisseria gonorrhoeae (4)
Apis mellifera (4)
Streptococcus pneumoniae (4)
Candida albicans (4)
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Salmonella enterica (3)
Erwinia amylovora (3)
Hordeum vulgare (3)
Bos taurus (3)
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Danio rerio (3)
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Zea mays (2)
Rattus rattus (2)
Pseudomonas aeruginosa (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 (1)

Repository

biostudies-arrayexpress (1119)
pride (8)
MetaboLights (5)
iProX (3)
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Tissue

Epithelial cell (6)
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Disease

Normal (17)
Squamous Cell Carcinoma (2)
Reference (2)
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Unspecified peripheral T-cell lymphoma (1)
T. circumcincta infection (1)
Not applicable (1)
VAT - Ventilated associated tracheobronchitis (1)
Myeloid neoplasm (1)
Phyllodes tumor (1)
Low-stage neuroblastoma (1)
Colon cancer Dukes C (1)
Post-stasis (1)
Major depression (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Infiltrating ductal carcinoma (1)
Acute type ATLL (1)
Xenografts with H1299 cell line (1)
Hodgkin lymphoma, mixed cellularity, stage IV (1)
Infected (1)
MFC II (1)
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No local recurrence (1)
Triple negative breast cancer (1)
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IRAK-4 Q293X mutation (1)
Infected (1)
Rheumatoid arthritis (1)

Technology Type

Mass Spectrometry (8)
Shotgun proteomics (5)
Mass spectrometry (3)
NMR spectroscopy (2)
Affinity purification coupled with mass spectrometry proteomics (2)
SWATH MS (1)
Bottom-up proteomics (1)

Instrument Platform

Agilent G2565AA and G2565BA Microarray Scanner (10)
Scanning hardware (8)
GenePix 4000A [Axon Instruments] (7)
G2565BA DNA microarray scanner [Agilent] (6)
ScanArray 5000 [PerkinElmer] (5)
Axon- GenePix4000B (5)
Axon GenePix 4000B scanning hardware (5)
Vortex (5)
GenePix 4000B [Axon Instruments] (4)
GenePix Professional 4200A [Axon Instruments] (3)
ScanArray Express HT [PerkinElmer] (3)
Illumina HiSeq 2500 (3)
Other (2)
G2565AA DNA microarray scanner [Agilent] (2)
418 [Affymetrix] (2)
Illumina HiSeq 2000 (2)
Bruker (2)
Affymetrix GeneChip (1)
Microarray scanner system (1)
Axon Instruments GenePix 4000B scanner (1)
Axon GenePix4000B (1)
Agilent Scanner (1)
BAS-5000 [FUJIFILM] (1)
G2505A DNA microarray scanner [Agilent] (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
Q Exactive HF-X (1)
Flow Injection Analysis MS - Alternating (FIA-MS (Alternating)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)

Publication Date

2013 (335)
2011 (233)
2010 (144)
2008 (75)
2009 (56)
2005 (46)
2007 (43)
2006 (38)
2004 (32)
2012 (31)
2015 (29)
2014 (25)
2016 (17)
2022 (7)
2025 (4)
2024 (4)
2021 (4)
2017 (3)
2023 (2)
2020 (2)
2018 (2)
2003 (1)
2002 (1)

CHEBI ID

CHEBI:17126 (3)
CHEBI:28683 (3)
CHEBI:16449 (3)
CHEBI:15366 (3)
CHEBI:20067 (3)
CHEBI:6359 (2)
CHEBI:15611 (2)
CHEBI:25094 (2)
CHEBI:18237 (2)
CHEBI:22660 (2)
CHEBI:27570 (2)
CHEBI:16811 (2)
CHEBI:28300 (2)
CHEBI:18257 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:545959 (2)
CHEBI:28044 (2)
CHEBI:1148 (2)
CHEBI:37024 (2)
CHEBI:15727 (2)
CHEBI:15940 (2)
CHEBI:27266 (2)
CHEBI:30768 (2)
CHEBI:30772 (2)
CHEBI:78320 (2)
CHEBI:16737 (2)
CHEBI:27897 (2)

Metabolite Name

Alanine (2)
Nonadeca-10Z-enoic acid (1)
6-Octadecylenic acid (1)
Bishomo-gamma-linolenic acid (1)
N-Acetyl-alpha-neuraminic acid (1)
3-Aminobenzoic acid (1)
5-Amino-levulinic acid (1)
Kyunurenine (1)
T-methylhisitidine (1)
Methylhistidine (1)
Nicotinate (vit B3) (1)
T-methylhistidine (1)
Homovallinate (1)
Mannose? (1)
Lactulose (1)
Sucrose? (1)
Riboflavin? (vit b2) (1)
Succinylacetone? (1)
N-acetylglucosamine (1)
Hydroxybutyrate (1)
Crenarchaeol (1)
Gondoyl-linoleate (1)
Linolenyl behenate (1)
Behenyl linolenate (1)
CL(1'-[18:0/18:2(9Z,12Z)],3'-[20:0/16:0]) (1)
CL(1'-[20:4(5Z,8Z,11Z,14Z)/18:0],3'-[18:1(9Z)/18:1(9Z)]) (1)
CL(1'-[18:1(9Z)/16:0],3'-[18:0/18:1(9Z)]) (1)
CL(1'-[18:1(9Z)/20:4(5Z,8Z,11Z,14Z)],3'-[18:2(9Z,12Z)/18:0]) (1)
CL(1'-[18:1(9Z)/18:1(9Z)],3'-[18:1(9Z)/18:1(9Z)]) (1)
CL(1'-[18:2(9Z,12Z)/18:0],3'-[18:1(9Z)/16:0]) (1)

Study type

Transcription profiling by array (500)
ChIP-chip by tiling array (388)
ChIP-seq (148)
ChIP-chip by array (16)
Comparative genomic hybridization by array (16)
RNA-seq of coding RNA (14)
Methylation profiling by array (9)
MicroRNA profiling by array (6)
Unknown experiment type (2)
Transcription profiling by tiling array (2)
RNAi profiling by array (2)
RNA-seq of non coding RNA (2)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
Hi-C (1)
Other (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2013 (334)
2011 (234)
2010 (144)
2008 (75)
2009 (56)
2005 (46)
2007 (43)
2006 (38)
2004 (32)
2012 (31)
2015 (30)
2014 (28)
2016 (19)
2025 (18)
2021 (16)
2024 (14)
2023 (11)
2022 (11)
2020 (9)
2017 (9)
2018 (7)
2019 (4)
2026 (3)
2003 (1)
2002 (1)

Lab affiliation

Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
Cedars-Sinai Medical Center (2)
Department of Pathology and Cancer Center, Stony Brook University, Stony Brook, NY 11794 (1)
Department of Surgery Cedars-Sinai Medical Center (1)
Associate Professor, Cedars-Sinai Medical Center, Surgery (1)

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See What You Feel: A Crossmodal Tool for Measuring Haptic Size Illusions.

Not available

S-EPMC7425280 | biostudies-literature

Allosteric regulation by c-di-AMP modulates a complete N-acetylglucosamine signaling cascade in Saccharopolyspora erythraea.

Not available

S-EPMC11076491 | biostudies-literature

I Like the Way You Eat It: Lemur (Indri indri) Gut Mycobiome and Geophagy.

Not available

S-EPMC8282574 | biostudies-literature

A network of acetyl phosphate-dependent modification modulates c-di-AMP homeostasis in Actinobacteria.

Not available

S-EPMC11323494 | biostudies-literature

A meet-up of acetyl phosphate and c-di-GMP modulates BldD activity for development and antibiotic production.

Not available

S-EPMC10359459 | biostudies-literature

Who you live with and what you duet for: a review of the function of primate duets in relation to their social organization.

Not available

S-EPMC10995044 | biostudies-literature

Exposure to Di-(2-ethylhexyl) Phthalate During Perinatal Period Gender-Specifically Impairs the Dendritic Growth of Pyramidal Neurons in Rat Offspring.

Not available

S-EPMC6066609 | biostudies-literature

Effects on gene expression in rat liver after administration of RXR agonists: UAB30, 4-methyl-UAB30, and Targretin

Examination of three retinoid X receptor (RXR) agonists [Targretin (TRG), UAB30, and 4-methyl-UAB30 (4-Me-UAB30)] showed that all inhibited mammary cancer in rodents and two (TRG and 4-Me-UAB30) strikingly increased serum triglyceride levels. Agents were administered in diets to female Sprague-Dawle...

ORGANISM(S): Rattus norvegicus

2014-05-14 | E-GEOD-57638 | biostudies-arrayexpress

Laparoscopic entry techniques: Which should you prefer?

Not available

S-EPMC10087714 | biostudies-literature

The Dedicated Inflammatory Bowel Disease Nurse, If You Know Them, You Love Them: Survey of the Italian IBD Patients' Association.

Not available

S-EPMC12659860 | biostudies-literature